Wall clock time and date at job start Sun Mar 7 2021 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.35447 * 126.06876 * 119.69627 * 4 2 1 6 6 N 1.35535 * 108.87411 * 179.89063 * 5 4 2 7 7 C 1.37652 * 108.64166 * 0.37051 * 6 5 4 8 8 C 1.46672 * 126.23181 * 179.77562 * 7 6 5 9 9 O 1.21698 * 119.99986 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99891 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99906 * 179.97438 * 10 8 7 12 12 H 1.08996 * 112.85083 * 334.67477 * 11 10 8 13 13 C 1.53783 * 113.61148 * 105.86762 * 11 10 8 14 14 C 1.54044 * 86.98619 * 89.16036 * 13 11 10 15 15 H 1.09002 * 113.61326 * 270.88136 * 14 13 11 16 16 C 1.53007 * 113.69310 * 139.98757 * 14 13 11 17 17 N 1.46503 * 109.47082 * 87.46788 * 16 14 13 18 18 C 1.36882 * 126.39819 * 89.99529 * 17 16 14 19 19 C 1.34663 * 106.81945 * 180.02562 * 18 17 16 20 20 N 1.34125 * 108.01953 * 0.02562 * 19 18 17 21 21 C 1.30498 * 109.25891 * 359.72277 * 20 19 18 22 22 C 1.53776 * 113.61313 * 203.47049 * 11 10 8 23 23 C 1.37870 * 107.53594 * 359.77464 * 7 6 5 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 26 26 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.08001 * 125.55902 * 0.02914 * 5 4 2 29 29 H 0.96997 * 125.67996 * 180.18408 * 6 5 4 30 30 H 0.97000 * 120.00409 * 0.02562 * 10 8 7 31 31 H 1.09003 * 113.61053 * 203.67133 * 13 11 10 32 32 H 1.09003 * 113.61291 * 334.56048 * 13 11 10 33 33 H 1.08996 * 109.46712 * 207.46630 * 16 14 13 34 34 H 1.08998 * 109.47007 * 327.46573 * 16 14 13 35 35 H 1.08004 * 126.58799 * 359.97095 * 18 17 16 36 36 H 1.08003 * 125.98874 * 179.97438 * 19 18 17 37 37 H 1.07998 * 125.65356 * 180.28880 * 21 20 19 38 38 H 1.09000 * 113.61902 * 25.44099 * 22 11 10 39 39 H 1.09007 * 113.61151 * 156.25146 * 22 11 10 40 40 H 1.07998 * 126.46198 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7086 -0.1724 -2.2005 6 7 2.9550 -1.1180 -3.1397 7 6 2.3183 -2.2813 -2.7705 8 6 2.3252 -3.5464 -3.5126 9 8 1.7197 -4.5092 -3.0796 10 7 3.0013 -3.6424 -4.6746 11 6 3.0086 -4.9063 -5.4156 12 1 2.8386 -5.7726 -4.7764 13 6 2.1261 -4.8871 -6.6748 14 6 3.3632 -4.3727 -7.4351 15 1 3.4547 -3.2865 -7.4359 16 6 3.5268 -4.9838 -8.8282 17 7 2.7732 -4.1895 -9.8015 18 6 3.2423 -3.1186 -10.5134 19 6 2.2261 -2.6885 -11.2853 20 7 1.1653 -3.4749 -11.0508 21 6 1.4872 -4.3797 -10.1672 22 6 4.2152 -5.0618 -6.3562 23 6 1.6729 -2.0406 -1.5762 24 1 -0.3934 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4678 -1.2086 28 1 3.0742 0.8436 -2.2210 29 1 3.4888 -0.9948 -3.9402 30 1 3.4836 -2.8749 -5.0200 31 1 1.7982 -5.8767 -6.9932 32 1 1.3107 -4.1655 -6.6256 33 1 4.5820 -4.9877 -9.1015 34 1 3.1490 -6.0062 -8.8231 35 1 4.2362 -2.6987 -10.4647 36 1 2.2593 -1.8557 -11.9722 37 1 0.8329 -5.1513 -9.7892 38 1 5.0853 -4.4812 -6.0500 39 1 4.4583 -6.0992 -6.5865 40 1 1.0793 -2.7461 -1.0139 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:01 Heat of formation + Delta-G solvation = 75.704892 kcal Electronic energy + Delta-G solvation = -23761.886069 eV Core-core repulsion = 20160.246435 eV Total energy + Delta-G solvation = -3601.639634 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.99048 -42.65083 -41.10864 -39.38794 -37.60543 -35.51839 -34.10910 -32.71878 -30.96332 -30.40846 -28.88617 -26.80872 -26.58409 -24.95056 -23.71094 -22.28565 -21.86102 -21.47059 -20.87228 -20.49616 -19.73250 -18.42526 -18.27742 -17.46737 -17.08284 -16.65025 -16.31138 -15.97416 -15.54587 -15.33805 -15.14765 -15.08931 -14.97228 -14.83873 -14.73455 -14.37048 -14.25388 -14.12041 -13.68171 -13.48156 -13.46320 -12.86605 -12.51032 -12.41987 -11.95884 -11.83325 -11.47851 -11.41795 -10.93689 -10.54695 -10.36838 -10.33051 -9.97456 -9.47635 -9.46610 -4.88294 0.17045 1.12466 1.27043 1.43173 1.74612 1.76201 1.89329 1.93304 2.03502 2.10362 2.20172 3.30263 3.40704 3.54376 3.62001 3.67324 3.73270 3.84705 3.85660 4.00878 4.03875 4.08459 4.19319 4.20171 4.45622 4.56321 4.57703 4.63298 4.70022 4.72452 4.75339 4.77799 4.83716 4.91334 4.93197 5.04250 5.31785 5.38662 5.44769 5.57185 5.80486 6.15207 6.28371 6.32889 6.90912 6.99920 7.13793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.572 6.572 2 C -0.058 4.058 3 Si 0.787 3.213 4 C -0.188 4.188 5 C 0.033 3.967 6 N -0.515 5.515 7 C -0.066 4.066 8 C 0.593 3.407 9 O -0.568 6.568 10 N -0.699 5.699 11 C 0.108 3.892 12 H 0.090 0.910 13 C -0.148 4.148 14 C -0.115 4.115 15 H 0.092 0.908 16 C 0.110 3.890 17 N -0.452 5.452 18 C -0.047 4.047 19 C -0.068 4.068 20 N -0.547 5.547 21 C 0.174 3.826 22 C -0.115 4.115 23 C -0.101 4.101 24 H 0.400 0.600 25 H 0.080 0.920 26 H -0.279 1.279 27 H -0.292 1.292 28 H 0.189 0.811 29 H 0.436 0.564 30 H 0.409 0.591 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.203 0.797 36 H 0.172 0.828 37 H 0.220 0.780 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.069 2.744 2.405 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.167 4.167 3 Si 0.691 3.309 4 C -0.194 4.194 5 C -0.105 4.105 6 N -0.113 5.113 7 C -0.179 4.179 8 C 0.381 3.619 9 O -0.447 6.447 10 N -0.349 5.349 11 C 0.003 3.997 12 H 0.108 0.892 13 C -0.187 4.187 14 C -0.134 4.134 15 H 0.110 0.890 16 C -0.011 4.011 17 N -0.134 5.134 18 C -0.181 4.181 19 C -0.215 4.215 20 N -0.267 5.267 21 C -0.109 4.109 22 C -0.153 4.153 23 C -0.128 4.128 24 H 0.251 0.749 25 H 0.098 0.902 26 H -0.205 1.205 27 H -0.219 1.219 28 H 0.206 0.794 29 H 0.277 0.723 30 H 0.245 0.755 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.219 0.781 36 H 0.189 0.811 37 H 0.237 0.763 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.631 2.267 1.289 8.065 hybrid contribution 0.755 -0.181 -0.345 0.849 sum 8.386 2.086 0.944 8.693 Atomic orbital electron populations 1.86462 1.18150 1.82486 1.51036 1.24402 0.85107 1.11402 0.95781 0.93811 0.77553 0.74193 0.85375 1.19255 1.05862 0.94712 0.99615 1.22008 1.02950 0.95236 0.90273 1.41763 1.40081 1.08417 1.21033 1.20260 1.09075 0.88090 1.00449 1.17116 0.78441 0.85769 0.80534 1.90851 1.45487 1.38787 1.69531 1.45402 1.52433 1.15201 1.21900 1.21973 0.98933 0.86357 0.92468 0.89216 1.23618 0.96772 1.02724 0.95582 1.22968 0.97005 1.00604 0.92861 0.89012 1.22234 0.98213 0.95138 0.85494 1.45759 1.11336 1.24483 1.31777 1.23157 1.02185 0.93557 0.99155 1.22644 0.90311 1.03358 1.05145 1.70241 1.31002 1.07708 1.17703 1.25373 0.85615 1.01826 0.98099 1.23276 0.95866 1.03768 0.92380 1.21282 0.99998 0.96486 0.95002 0.74947 0.90223 1.20519 1.21938 0.79384 0.72299 0.75472 0.87389 0.93141 0.86597 0.86833 0.78051 0.81121 0.76335 0.89070 0.86025 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.48 12.86 -148.98 -1.92 -3.40 16 2 C -0.06 -0.04 3.01 71.24 0.21 0.17 16 3 Si 0.79 -3.27 30.59 68.60 2.10 -1.17 16 4 C -0.19 -1.04 5.47 -20.12 -0.11 -1.15 16 5 C 0.03 0.03 10.45 83.48 0.87 0.90 16 6 N -0.52 0.83 5.99 -183.63 -1.10 -0.27 16 7 C -0.07 -0.37 7.06 40.35 0.28 -0.09 16 8 C 0.59 4.12 7.79 86.45 0.67 4.79 16 9 O -0.57 -9.03 16.50 -4.34 -0.07 -9.10 16 10 N -0.70 1.46 5.26 -443.99 -2.34 -0.87 16 11 C 0.11 -0.40 4.30 45.52 0.20 -0.20 16 12 H 0.09 0.09 7.50 -2.39 -0.02 0.07 16 13 C -0.15 0.73 7.45 31.21 0.23 0.97 16 14 C -0.12 1.13 3.85 -10.18 -0.04 1.10 16 15 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 16 C 0.11 -1.14 5.99 86.38 0.52 -0.62 16 17 N -0.45 1.11 2.75 -529.06 -1.46 -0.35 16 18 C -0.05 0.03 11.58 83.08 0.96 1.00 16 19 C -0.07 -0.40 11.87 83.52 0.99 0.59 16 20 N -0.55 -5.66 11.25 -200.32 -2.25 -7.91 16 21 C 0.17 0.52 12.56 180.26 2.26 2.79 16 22 C -0.11 1.30 7.38 31.12 0.23 1.53 16 23 C -0.10 -0.96 10.59 22.57 0.24 -0.72 16 24 H 0.40 -3.33 8.74 -74.06 -0.65 -3.97 16 25 H 0.08 -0.14 7.96 -2.38 -0.02 -0.16 16 26 H -0.28 0.17 7.11 99.48 0.71 0.87 16 27 H -0.29 -0.68 7.11 99.48 0.71 0.02 16 28 H 0.19 -0.74 6.19 -2.91 -0.02 -0.76 16 29 H 0.44 -4.29 8.19 -92.71 -0.76 -5.05 16 30 H 0.41 -3.48 7.83 -92.71 -0.73 -4.21 16 31 H 0.11 -0.77 7.91 -2.39 -0.02 -0.79 16 32 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.12 -1.59 8.14 -2.39 -0.02 -1.61 16 34 H 0.11 -1.45 7.85 -2.39 -0.02 -1.47 16 35 H 0.20 -1.58 8.06 -2.91 -0.02 -1.61 16 36 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.22 -0.59 8.06 -2.91 -0.02 -0.61 16 38 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 39 H 0.12 -1.72 8.10 -2.38 -0.02 -1.74 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 Total: 0.00 -32.41 343.83 -0.51 -32.92 By element: Atomic # 1 Polarization: -19.89 SS G_CDS: -1.00 Total: -20.90 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 7.53 Total: 11.05 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -7.15 Total: -9.41 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.99 Total: -12.50 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.10 Total: -1.17 kcal Total: -32.41 -0.51 -32.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.623 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds