Wall clock time and date at job start Sun Mar 7 2021 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35540 * 125.67879 * 2 1 4 4 C 1.35447 * 108.87110 * 180.21203 * 3 2 1 5 5 C 1.50701 * 126.06531 * 179.72260 * 4 3 2 6 6 O 1.42895 * 109.47245 * 245.02026 * 5 4 3 7 7 Si 1.86294 * 109.47269 * 5.02686 * 5 4 3 8 8 C 1.39834 * 107.86675 * 359.61679 * 4 3 2 9 9 C 1.37656 * 125.67836 * 179.97438 * 2 1 3 10 10 C 1.46675 * 126.23171 * 359.97438 * 9 2 1 11 11 O 1.21697 * 120.00036 * 5.67298 * 10 9 2 12 12 N 1.34773 * 119.99803 * 185.68168 * 10 9 2 13 13 C 1.46507 * 119.99987 * 185.19853 * 12 10 9 14 14 H 1.08996 * 112.84741 * 23.80562 * 13 12 10 15 15 C 1.53782 * 113.61210 * 154.99629 * 13 12 10 16 16 C 1.53784 * 87.07947 * 89.11922 * 15 13 12 17 17 H 1.08998 * 113.61152 * 270.79816 * 16 15 13 18 18 C 1.52998 * 113.61189 * 139.97956 * 16 15 13 19 19 N 1.46504 * 109.46797 * 175.00016 * 18 16 15 20 20 C 1.36879 * 126.39761 * 89.99873 * 19 18 16 21 21 C 1.34672 * 106.81764 * 179.97438 * 20 19 18 22 22 N 1.34126 * 108.01920 * 0.02562 * 21 20 19 23 23 C 1.30496 * 109.25633 * 359.72270 * 22 21 20 24 24 C 1.53774 * 113.61582 * 252.49265 * 13 12 10 25 25 H 1.08995 * 109.47391 * 85.94165 * 1 2 3 26 26 H 1.09002 * 109.46798 * 205.94728 * 1 2 3 27 27 H 1.09007 * 109.46570 * 325.94184 * 1 2 3 28 28 H 1.08002 * 125.56242 * 359.94597 * 3 2 1 29 29 H 1.09002 * 109.46586 * 125.02893 * 5 4 3 30 30 H 0.96707 * 113.99979 * 60.00611 * 6 5 4 31 31 H 1.48498 * 110.00040 * 58.67563 * 7 5 4 32 32 H 1.48503 * 110.00110 * 179.97438 * 7 5 4 33 33 H 1.08003 * 126.45855 * 180.15337 * 8 4 3 34 34 H 0.96999 * 120.00523 * 5.19649 * 12 10 9 35 35 H 1.09006 * 113.61441 * 203.66690 * 15 13 12 36 36 H 1.09002 * 113.61955 * 334.48479 * 15 13 12 37 37 H 1.09001 * 109.47249 * 294.99691 * 18 16 15 38 38 H 1.09001 * 109.47562 * 55.00325 * 18 16 15 39 39 H 1.08000 * 126.59212 * 0.04005 * 20 19 18 40 40 H 1.08003 * 125.98959 * 180.02562 * 21 20 19 41 41 H 1.08000 * 125.65192 * 180.28830 * 23 22 21 42 42 H 1.09005 * 113.61617 * 25.43932 * 24 13 12 43 43 H 1.09000 * 113.61131 * 156.33241 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0047 5 6 4.7536 1.6189 -0.0123 6 8 5.4715 1.4498 -1.2362 7 14 4.1934 3.3891 0.1397 8 6 3.5780 -0.6888 0.0011 9 6 2.2679 -1.1182 0.0005 10 6 1.8124 -2.5124 0.0017 11 8 0.6265 -2.7653 -0.1019 12 7 2.7073 -3.5135 0.1176 13 6 2.2671 -4.9063 0.0046 14 1 1.3410 -5.0129 -0.5602 15 6 3.3782 -5.8688 -0.4468 16 6 3.7236 -6.0430 1.0416 17 1 4.4504 -5.3184 1.4088 18 6 4.0734 -7.4822 1.4252 19 7 4.5007 -7.5240 2.8260 20 6 3.6949 -7.7172 3.9155 21 6 4.4921 -7.6844 5.0004 22 7 5.7502 -7.4762 4.5847 23 6 5.7638 -7.3847 3.2830 24 6 2.2647 -5.6622 1.3437 25 1 -0.3634 0.0727 -1.0250 26 1 -0.3633 -0.9241 0.4497 27 1 -0.3633 0.8515 0.5756 28 1 1.9082 2.1236 -0.0008 29 1 5.4030 1.3700 0.8270 30 1 4.9539 1.6542 -2.0272 31 1 3.4183 3.5707 1.3933 32 1 5.3692 4.2963 0.1341 33 1 4.4584 -1.3144 0.0017 34 1 3.6428 -3.3120 0.2758 35 1 3.0038 -6.7780 -0.9174 36 1 4.1657 -5.3861 -1.0256 37 1 3.1969 -8.1166 1.2937 38 1 4.8813 -7.8419 0.7881 39 1 2.6255 -7.8681 3.9067 40 1 4.1741 -7.8046 6.0255 41 1 6.6397 -7.2222 2.6725 42 1 2.1538 -5.0123 2.2118 43 1 1.5858 -6.5147 1.3626 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:05 Heat of formation + Delta-G solvation = 81.526841 kcal Electronic energy + Delta-G solvation = -25960.693128 eV Core-core repulsion = 22203.768334 eV Total energy + Delta-G solvation = -3756.924794 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.95646 -42.59169 -41.03478 -39.28767 -37.66771 -35.49242 -34.29618 -33.57543 -30.95832 -30.39940 -28.77634 -28.26420 -26.74632 -25.78163 -24.73309 -23.49771 -22.25292 -21.82013 -21.35657 -20.67615 -20.17768 -18.90096 -18.33750 -17.76425 -17.11136 -16.85701 -16.67512 -16.42805 -15.99677 -15.82851 -15.51675 -15.34172 -15.06866 -14.97531 -14.89948 -14.56278 -14.44914 -14.19860 -14.09295 -13.78281 -13.51654 -13.45449 -13.29207 -13.15319 -12.76531 -12.35479 -12.28278 -11.95172 -11.73154 -11.37339 -11.21560 -10.92078 -10.48533 -10.31977 -10.21825 -9.73416 -9.45101 -9.29744 -4.95988 0.35079 1.15715 1.40548 1.49536 1.53862 1.72334 1.93079 2.03845 2.21720 2.22683 2.26263 3.37140 3.46861 3.59859 3.68221 3.71572 3.78269 3.81053 3.88967 4.01828 4.03753 4.16932 4.21311 4.25999 4.35329 4.37304 4.50172 4.58252 4.64203 4.65063 4.70819 4.73659 4.74316 4.78424 4.81611 4.95991 4.99480 5.12529 5.16805 5.35251 5.49532 5.64683 5.82155 5.84992 6.13669 6.32630 6.37966 6.89176 7.04360 7.16117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.412 5.412 3 C 0.036 3.964 4 C -0.220 4.220 5 C -0.037 4.037 6 O -0.560 6.560 7 Si 0.780 3.220 8 C -0.113 4.113 9 C -0.080 4.080 10 C 0.589 3.411 11 O -0.581 6.581 12 N -0.692 5.692 13 C 0.113 3.887 14 H 0.090 0.910 15 C -0.117 4.117 16 C -0.117 4.117 17 H 0.090 0.910 18 C 0.111 3.889 19 N -0.452 5.452 20 C -0.046 4.046 21 C -0.068 4.068 22 N -0.546 5.546 23 C 0.174 3.826 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.203 0.797 29 H 0.100 0.900 30 H 0.393 0.607 31 H -0.284 1.284 32 H -0.304 1.304 33 H 0.154 0.846 34 H 0.413 0.587 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.195 0.805 40 H 0.169 0.831 41 H 0.228 0.772 42 H 0.050 0.950 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 0.691 -6.386 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.084 5.084 3 C -0.101 4.101 4 C -0.226 4.226 5 C -0.148 4.148 6 O -0.368 6.368 7 Si 0.686 3.314 8 C -0.140 4.140 9 C -0.193 4.193 10 C 0.378 3.622 11 O -0.462 6.462 12 N -0.343 5.343 13 C 0.008 3.992 14 H 0.108 0.892 15 C -0.156 4.156 16 C -0.136 4.136 17 H 0.108 0.892 18 C -0.010 4.010 19 N -0.134 5.134 20 C -0.180 4.180 21 C -0.215 4.215 22 N -0.265 5.265 23 C -0.109 4.109 24 C -0.183 4.183 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.128 0.872 28 H 0.219 0.781 29 H 0.118 0.882 30 H 0.243 0.757 31 H -0.211 1.211 32 H -0.233 1.233 33 H 0.172 0.828 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.212 0.788 40 H 0.187 0.813 41 H 0.245 0.755 42 H 0.068 0.932 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.870 1.064 -5.252 6.078 hybrid contribution -0.093 -0.418 0.339 0.546 sum -2.963 0.646 -4.913 5.773 Atomic orbital electron populations 1.22443 0.74792 1.05716 1.04966 1.44041 1.07670 1.04794 1.51889 1.22351 0.89710 0.92569 1.05490 1.19901 0.94272 0.94731 1.13696 1.24463 0.92540 1.08369 0.89400 1.86445 1.42174 1.92195 1.15936 0.94009 0.80310 0.72417 0.84640 1.21405 0.94250 0.95291 1.03031 1.20056 0.90933 0.87611 1.20683 1.17175 0.85284 0.84267 0.75445 1.90777 1.17520 1.85298 1.52644 1.45256 1.11549 1.04961 1.72497 1.21916 0.99569 0.79624 0.98089 0.89151 1.23298 0.97557 0.99837 0.94858 1.22924 0.96939 0.96220 0.97558 0.89168 1.22237 1.03815 0.97544 0.77451 1.45753 1.07453 1.51841 1.08312 1.23060 0.98924 1.09663 0.86377 1.22600 0.89366 1.09324 1.00186 1.70235 1.23955 1.21010 1.11349 1.25513 0.89214 1.04863 0.91273 1.23524 0.97102 1.00651 0.97069 0.89319 0.89831 0.87164 0.78053 0.88227 0.75720 1.21118 1.23250 0.82816 0.75031 0.86078 0.89183 0.87165 0.86306 0.78841 0.81327 0.75532 0.93159 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.11 10.64 127.77 1.36 1.25 16 2 N -0.41 -0.56 3.16 -534.30 -1.69 -2.25 16 3 C 0.04 -0.08 9.94 83.48 0.83 0.75 16 4 C -0.22 0.04 5.43 -20.12 -0.11 -0.07 16 5 C -0.04 0.04 3.02 71.24 0.22 0.25 16 6 O -0.56 0.06 12.88 -148.98 -1.92 -1.86 16 7 Si 0.78 -2.70 30.60 68.60 2.10 -0.60 16 8 C -0.11 -0.14 10.28 22.57 0.23 0.09 16 9 C -0.08 -0.29 6.88 40.35 0.28 -0.01 16 10 C 0.59 3.09 7.77 86.45 0.67 3.76 16 11 O -0.58 -6.60 14.30 -4.34 -0.06 -6.66 16 12 N -0.69 0.88 5.24 -444.00 -2.32 -1.44 16 13 C 0.11 -0.42 4.29 45.51 0.20 -0.22 16 14 H 0.09 0.01 7.53 -2.39 -0.02 0.00 16 15 C -0.12 1.23 7.39 31.12 0.23 1.46 16 16 C -0.12 1.03 3.84 -10.27 -0.04 0.99 16 17 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 18 C 0.11 -1.06 5.99 86.38 0.52 -0.54 16 19 N -0.45 0.79 2.75 -529.06 -1.46 -0.67 16 20 C -0.05 -0.05 11.58 83.09 0.96 0.91 16 21 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 22 N -0.55 -5.66 11.25 -200.31 -2.25 -7.92 16 23 C 0.17 0.43 12.56 180.26 2.26 2.70 16 24 C -0.14 0.71 7.43 31.12 0.23 0.94 16 25 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.08 0.26 6.22 -2.39 -0.01 0.24 16 27 H 0.11 -0.82 8.14 -2.38 -0.02 -0.83 16 28 H 0.20 -1.83 6.21 -2.91 -0.02 -1.85 16 29 H 0.10 0.08 7.96 -2.39 -0.02 0.06 16 30 H 0.39 -3.14 8.70 -74.05 -0.64 -3.78 16 31 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 32 H -0.30 -1.46 7.11 99.48 0.71 -0.76 16 33 H 0.15 -0.31 7.49 -2.91 -0.02 -0.33 16 34 H 0.41 -2.14 7.65 -92.71 -0.71 -2.85 16 35 H 0.12 -1.65 8.10 -2.38 -0.02 -1.66 16 36 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H 0.11 -1.32 7.84 -2.39 -0.02 -1.33 16 38 H 0.12 -1.57 8.14 -2.39 -0.02 -1.59 16 39 H 0.19 -0.88 8.06 -2.91 -0.02 -0.91 16 40 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.23 -1.07 8.06 -2.91 -0.02 -1.09 16 42 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.11 -0.75 7.90 -2.39 -0.02 -0.77 16 Total: 0.00 -27.89 361.93 0.95 -26.94 By element: Atomic # 1 Polarization: -18.03 SS G_CDS: -0.28 Total: -18.31 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 8.83 Total: 12.76 kcal Atomic # 7 Polarization: -4.56 SS G_CDS: -7.72 Total: -12.28 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.98 Total: -8.52 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.10 Total: -0.60 kcal Total: -27.89 0.95 -26.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.469 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds