Wall clock time and date at job start Sun Mar 7 2021 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37654 * 125.67302 * 2 1 4 4 C 1.46678 * 126.23447 * 359.96149 * 3 2 1 5 5 O 1.21685 * 119.99982 * 4.36833 * 4 3 2 6 6 N 1.34774 * 119.99701 * 184.36981 * 4 3 2 7 7 C 1.46504 * 120.00086 * 174.62780 * 6 4 3 8 8 H 1.09006 * 112.90125 * 23.75267 * 7 6 4 9 9 C 1.53779 * 113.61464 * 154.99929 * 7 6 4 10 10 C 1.53774 * 87.17411 * 89.07574 * 9 7 6 11 11 H 1.08999 * 113.61595 * 270.92501 * 10 9 7 12 12 C 1.53001 * 113.61463 * 140.01994 * 10 9 7 13 13 N 1.46499 * 109.47154 * 175.00419 * 12 10 9 14 14 C 1.36876 * 126.40169 * 90.00116 * 13 12 10 15 15 C 1.34668 * 106.82088 * 180.02562 * 14 13 12 16 16 N 1.34124 * 108.02120 * 359.97438 * 15 14 13 17 17 C 1.30506 * 109.25622 * 359.72505 * 16 15 14 18 18 C 1.53775 * 113.61517 * 252.50059 * 7 6 4 19 19 C 1.37875 * 107.52832 * 179.70123 * 3 2 1 20 20 C 1.39835 * 107.08942 * 0.26014 * 19 3 2 21 21 C 1.35458 * 107.86037 * 0.02562 * 20 19 3 22 22 C 1.50700 * 125.56062 * 180.02562 * 21 20 19 23 23 O 1.42901 * 109.47106 * 209.97741 * 22 21 20 24 24 Si 1.86308 * 109.46886 * 329.96997 * 22 21 20 25 25 H 1.08999 * 109.47182 * 92.05266 * 1 2 3 26 26 H 1.09005 * 109.47210 * 212.04786 * 1 2 3 27 27 H 1.08998 * 109.47614 * 332.05071 * 1 2 3 28 28 H 0.97002 * 120.00568 * 354.63023 * 6 4 3 29 29 H 1.09004 * 113.61122 * 203.66948 * 9 7 6 30 30 H 1.08999 * 113.61338 * 334.48344 * 9 7 6 31 31 H 1.09008 * 109.47477 * 295.00097 * 12 10 9 32 32 H 1.08996 * 109.46994 * 55.00351 * 12 10 9 33 33 H 1.08005 * 126.58677 * 359.96428 * 14 13 12 34 34 H 1.08003 * 125.99055 * 180.02562 * 15 14 13 35 35 H 1.07991 * 125.65445 * 180.28905 * 17 16 15 36 36 H 1.08990 * 113.61962 * 25.42753 * 18 7 6 37 37 H 1.09004 * 113.61440 * 156.33579 * 18 7 6 38 38 H 1.08001 * 126.45531 * 180.29653 * 19 3 2 39 39 H 1.07998 * 126.06771 * 180.02562 * 20 19 3 40 40 H 1.08992 * 109.47493 * 89.97374 * 22 21 20 41 41 H 0.96694 * 114.00293 * 179.97438 * 23 22 21 42 42 H 1.48501 * 109.99461 * 178.68091 * 24 22 21 43 43 H 1.48492 * 110.00318 * 300.00416 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8122 2.5125 -0.0008 5 8 0.6244 2.7646 0.0787 6 7 2.7093 3.5144 -0.0896 7 6 2.2500 4.9004 -0.2091 8 1 1.2451 5.0499 0.1859 9 6 3.2707 5.9334 0.2969 10 6 3.8495 5.9463 -1.1277 11 1 4.6278 5.2005 -1.2896 12 6 4.2504 7.3406 -1.6138 13 7 4.8965 7.2339 -2.9242 14 6 4.2751 7.2849 -4.1428 15 6 5.2359 7.1467 -5.0762 16 7 6.4120 7.0155 -4.4449 17 6 6.2172 7.0730 -3.1558 18 6 2.4565 5.4992 -1.6103 19 6 3.5779 0.6889 0.0069 20 6 3.5522 -0.7092 0.0049 21 6 2.2555 -1.1009 -0.0035 22 6 1.7709 -2.5278 -0.0077 23 8 0.5169 -2.6031 -0.6888 24 14 3.0168 -3.6041 -0.8799 25 1 -0.3633 -0.0368 -1.0270 26 1 -0.3634 -0.8711 0.5453 27 1 -0.3634 0.9078 0.4816 28 1 3.6591 3.3179 -0.0745 29 1 2.8219 6.8811 0.5945 30 1 3.9586 5.5377 1.0441 31 1 3.3615 7.9660 -1.6968 32 1 4.9442 7.7879 -0.9020 33 1 3.2174 7.4106 -4.3213 34 1 5.0859 7.1432 -6.1458 35 1 6.9846 7.0007 -2.3994 36 1 2.4881 4.7528 -2.4039 37 1 1.7851 6.3283 -1.8342 38 1 4.4582 1.3145 0.0132 39 1 4.4133 -1.3610 0.0094 40 1 1.6482 -2.8729 1.0188 41 1 0.1448 -3.4946 -0.7303 42 1 2.5658 -5.0188 -0.8630 43 1 3.1932 -3.1439 -2.2807 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:09 Heat of formation + Delta-G solvation = 81.064455 kcal Electronic energy + Delta-G solvation = -26049.135027 eV Core-core repulsion = 22292.190182 eV Total energy + Delta-G solvation = -3756.944845 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.93016 -42.59454 -41.03025 -39.29157 -37.87394 -35.48358 -34.26693 -33.52285 -31.49115 -30.39714 -28.86403 -27.52206 -26.86268 -26.70041 -24.23622 -23.20408 -22.23177 -21.78956 -21.63572 -20.46214 -20.15885 -18.88674 -18.49942 -18.25419 -17.32811 -17.00285 -16.70628 -16.40176 -16.11631 -15.93651 -15.41040 -15.30178 -14.96634 -14.86790 -14.59239 -14.51752 -14.43291 -14.17421 -13.96736 -13.74143 -13.64752 -13.46240 -13.35240 -13.01929 -12.77198 -12.73422 -12.33417 -12.12510 -11.72336 -11.34718 -11.20409 -10.89602 -10.78973 -10.46211 -10.19346 -9.77968 -9.42842 -9.09003 -4.89725 0.32085 1.14504 1.18138 1.55578 1.67065 1.72602 1.95417 2.01440 2.25234 2.26972 2.30754 3.10699 3.37895 3.48784 3.60595 3.69601 3.74258 3.80969 3.91710 3.92774 4.05905 4.19113 4.25201 4.28340 4.35675 4.38609 4.51758 4.52407 4.59855 4.61375 4.69694 4.75589 4.80583 4.82832 4.97586 5.01376 5.05785 5.13280 5.16274 5.37497 5.52268 5.74339 5.84055 5.97446 6.10758 6.35551 6.41455 6.48813 7.06892 7.18599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.408 5.408 3 C -0.091 4.091 4 C 0.589 3.411 5 O -0.587 6.587 6 N -0.688 5.688 7 C 0.110 3.890 8 H 0.087 0.913 9 C -0.116 4.116 10 C -0.115 4.115 11 H 0.095 0.905 12 C 0.111 3.889 13 N -0.452 5.452 14 C -0.048 4.048 15 C -0.067 4.067 16 N -0.546 5.546 17 C 0.176 3.824 18 C -0.147 4.147 19 C -0.123 4.123 20 C -0.206 4.206 21 C 0.044 3.956 22 C -0.069 4.069 23 O -0.562 6.562 24 Si 0.808 3.192 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.416 0.584 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.192 0.808 34 H 0.168 0.832 35 H 0.231 0.769 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.104 0.896 41 H 0.400 0.600 42 H -0.279 1.279 43 H -0.310 1.310 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -1.040 6.519 7.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.081 5.081 3 C -0.204 4.204 4 C 0.379 3.621 5 O -0.470 6.470 6 N -0.339 5.339 7 C 0.005 3.995 8 H 0.105 0.895 9 C -0.154 4.154 10 C -0.134 4.134 11 H 0.113 0.887 12 C -0.010 4.010 13 N -0.134 5.134 14 C -0.182 4.182 15 C -0.214 4.214 16 N -0.265 5.265 17 C -0.107 4.107 18 C -0.186 4.186 19 C -0.149 4.149 20 C -0.230 4.230 21 C -0.074 4.074 22 C -0.177 4.177 23 O -0.373 6.373 24 Si 0.711 3.289 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.254 0.746 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.209 0.791 34 H 0.186 0.814 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.195 0.805 39 H 0.203 0.797 40 H 0.121 0.879 41 H 0.252 0.748 42 H -0.205 1.205 43 H -0.239 1.239 Dipole moment (debyes) X Y Z Total from point charges 2.159 -0.810 5.621 6.075 hybrid contribution -2.036 -0.418 -0.280 2.097 sum 0.124 -1.228 5.340 5.481 Atomic orbital electron populations 1.22120 0.76018 1.04559 1.03270 1.43904 1.07196 1.04802 1.52154 1.20227 0.91617 0.87263 1.21253 1.17200 0.85329 0.84365 0.75250 1.90758 1.18006 1.85358 1.52845 1.45162 1.09887 1.05170 1.73681 1.21919 0.99779 0.80141 0.97682 0.89515 1.23273 0.97087 0.99446 0.95587 1.22971 0.96800 0.96643 0.96974 0.88653 1.22228 1.00231 0.97769 0.80819 1.45747 1.07651 1.52401 1.07567 1.23034 1.00517 1.10170 0.84457 1.22581 0.88881 1.09378 1.00584 1.70240 1.28855 1.21537 1.05876 1.25549 0.85812 1.04500 0.94788 1.23594 0.97558 1.00983 0.96423 1.21703 0.94258 0.95745 1.03219 1.20972 0.95082 0.95679 1.11224 1.20616 0.91282 0.87628 1.07857 1.24900 0.93686 0.96021 1.03052 1.86529 1.35251 1.36154 1.79333 0.93468 0.83770 0.73442 0.78200 0.91839 0.88351 0.89753 0.74638 0.86303 0.88887 0.87417 0.86123 0.79064 0.81428 0.75312 0.93126 0.87859 0.80537 0.79655 0.87859 0.74818 1.20514 1.23852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 9.39 127.77 1.20 1.80 16 2 N -0.41 -3.15 3.16 -519.71 -1.64 -4.80 16 3 C -0.09 -0.59 6.89 40.35 0.28 -0.31 16 4 C 0.59 4.42 7.77 86.45 0.67 5.10 16 5 O -0.59 -8.68 14.19 -4.30 -0.06 -8.74 16 6 N -0.69 0.55 5.25 -444.01 -2.33 -1.78 16 7 C 0.11 -0.32 4.36 45.51 0.20 -0.12 16 8 H 0.09 0.16 7.42 -2.38 -0.02 0.14 16 9 C -0.12 1.21 7.38 31.12 0.23 1.44 16 10 C -0.11 1.06 3.85 -10.17 -0.04 1.02 16 11 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 12 C 0.11 -1.09 5.99 86.38 0.52 -0.57 16 13 N -0.45 0.96 2.75 -529.06 -1.46 -0.49 16 14 C -0.05 -0.05 11.58 83.09 0.96 0.91 16 15 C -0.07 -0.46 11.87 83.52 0.99 0.53 16 16 N -0.55 -5.36 11.25 -200.31 -2.25 -7.61 16 17 C 0.18 0.30 12.56 180.26 2.26 2.57 16 18 C -0.15 0.65 7.44 31.21 0.23 0.88 16 19 C -0.12 -0.04 10.36 22.57 0.23 0.19 16 20 C -0.21 0.08 9.37 22.01 0.21 0.28 16 21 C 0.04 0.15 6.17 41.35 0.26 0.41 16 22 C -0.07 0.12 2.88 71.24 0.20 0.32 16 23 O -0.56 -0.20 10.43 -148.98 -1.55 -1.75 16 24 Si 0.81 -3.06 31.10 68.60 2.13 -0.93 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.40 6.96 -2.38 -0.02 0.38 16 27 H 0.08 0.86 6.12 -2.39 -0.01 0.84 16 28 H 0.42 -2.63 7.60 -92.71 -0.70 -3.34 16 29 H 0.12 -1.58 8.10 -2.38 -0.02 -1.60 16 30 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.11 -1.27 7.85 -2.38 -0.02 -1.29 16 32 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 33 H 0.19 -0.80 8.06 -2.91 -0.02 -0.82 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.23 -1.35 8.06 -2.92 -0.02 -1.37 16 36 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.10 -0.65 7.91 -2.38 -0.02 -0.67 16 38 H 0.18 -1.25 7.45 -2.91 -0.02 -1.27 16 39 H 0.19 -1.46 6.85 -2.91 -0.02 -1.48 16 40 H 0.10 -0.63 7.96 -2.39 -0.02 -0.64 16 41 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 42 H -0.28 0.16 7.11 99.48 0.71 0.87 16 43 H -0.31 -1.86 7.11 99.48 0.71 -1.15 16 Total: 0.00 -30.18 358.05 0.97 -29.21 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -0.27 Total: -17.53 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 8.41 Total: 14.43 kcal Atomic # 7 Polarization: -7.00 SS G_CDS: -7.68 Total: -14.68 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.62 Total: -10.50 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.13 Total: -0.93 kcal Total: -30.18 0.97 -29.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.271 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds