Wall clock time and date at job start Sun Mar 7 2021 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 125.56876 * 2 1 4 4 C 1.50703 * 126.06576 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47160 * 245.46262 * 4 3 2 6 6 Si 1.86291 * 109.46836 * 125.46204 * 4 3 2 7 7 C 1.39839 * 107.86493 * 180.28397 * 3 2 1 8 8 C 1.50696 * 126.45425 * 179.74049 * 7 3 2 9 9 C 1.37875 * 107.08296 * 359.57024 * 7 3 2 10 10 C 1.46680 * 126.22879 * 180.12303 * 9 7 3 11 11 O 1.21699 * 119.99957 * 0.32789 * 10 9 7 12 12 N 1.34775 * 119.99745 * 180.33196 * 10 9 7 13 13 C 1.46500 * 120.00060 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.84595 * 23.80450 * 13 12 10 15 15 C 1.53779 * 113.61845 * 154.99936 * 13 12 10 16 16 C 1.53786 * 87.07812 * 89.11566 * 15 13 12 17 17 H 1.08994 * 113.61734 * 270.80059 * 16 15 13 18 18 C 1.53008 * 113.60899 * 139.98364 * 16 15 13 19 19 N 1.46505 * 109.46622 * 175.00093 * 18 16 15 20 20 C 1.36879 * 126.39373 * 269.71129 * 19 18 16 21 21 C 1.34674 * 106.81280 * 179.84813 * 20 19 18 22 22 N 1.34120 * 108.02021 * 0.41885 * 21 20 19 23 23 C 1.30498 * 109.25811 * 359.73596 * 22 21 20 24 24 C 1.53777 * 113.61654 * 252.50062 * 13 12 10 25 25 N 1.35537 * 125.56121 * 180.02562 * 2 1 3 26 26 H 1.09008 * 109.46782 * 84.73941 * 1 2 3 27 27 H 1.08993 * 109.47702 * 204.73757 * 1 2 3 28 28 H 1.09000 * 109.47074 * 324.74596 * 1 2 3 29 29 H 1.09004 * 109.47022 * 5.46373 * 4 3 2 30 30 H 0.96691 * 114.00151 * 300.00187 * 5 4 3 31 31 H 1.48504 * 110.00319 * 58.68451 * 6 4 3 32 32 H 1.48500 * 109.99765 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47361 * 89.99384 * 8 7 3 34 34 H 1.09006 * 109.46835 * 209.99259 * 8 7 3 35 35 H 1.09000 * 109.47214 * 329.99558 * 8 7 3 36 36 H 0.97001 * 120.00386 * 0.02562 * 12 10 9 37 37 H 1.08995 * 113.61655 * 203.66969 * 15 13 12 38 38 H 1.09004 * 113.60884 * 334.57445 * 15 13 12 39 39 H 1.08999 * 109.46811 * 295.00022 * 18 16 15 40 40 H 1.08999 * 109.46850 * 55.00409 * 18 16 15 41 41 H 1.07998 * 126.59377 * 359.97438 * 20 19 18 42 42 H 1.08004 * 125.98846 * 180.11908 * 21 20 19 43 43 H 1.08008 * 125.64882 * 180.02562 * 23 22 21 44 44 H 1.09000 * 113.61419 * 25.43040 * 24 13 12 45 45 H 1.09003 * 113.61723 * 156.33027 * 24 13 12 46 46 H 0.97006 * 125.67373 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 1.8201 2.5321 0.0005 5 8 2.2006 3.1608 -1.2250 6 14 2.5921 3.4420 1.4311 7 6 3.6271 0.6765 -0.0066 8 6 4.8486 1.5590 -0.0145 9 6 3.6122 -0.7021 -0.0006 10 6 4.7859 -1.5817 -0.0017 11 8 5.9049 -1.1033 -0.0024 12 7 4.6252 -2.9199 -0.0021 13 6 5.7974 -3.7985 -0.0038 14 1 6.6878 -3.3171 0.4008 15 6 5.5253 -5.1901 0.5914 16 6 5.1258 -5.6318 -0.8264 17 1 4.0697 -5.4806 -1.0496 18 6 5.6155 -7.0345 -1.1921 19 7 5.0872 -7.4089 -2.5062 20 6 3.9073 -8.0576 -2.7524 21 6 3.8114 -8.1983 -4.0883 22 7 4.9073 -7.6586 -4.6420 23 6 5.6760 -7.1839 -3.7004 24 6 6.0348 -4.5065 -1.3481 25 7 2.2953 -1.1026 -0.0005 26 1 -0.3633 0.0942 -1.0234 27 1 -0.3634 -0.9333 0.4300 28 1 -0.3633 0.8392 0.5932 29 1 0.7347 2.5545 0.0988 30 1 3.1550 3.1770 -1.3790 31 1 4.0725 3.3914 1.3259 32 1 2.1313 4.8537 1.4432 33 1 5.1487 1.7733 1.0113 34 1 5.6616 1.0494 -0.5319 35 1 4.6193 2.4924 -0.5285 36 1 3.7333 -3.3013 -0.0020 37 1 6.4196 -5.6865 0.9678 38 1 4.6995 -5.2067 1.3028 39 1 6.7051 -7.0423 -1.2228 40 1 5.2679 -7.7471 -0.4442 41 1 3.1900 -8.3907 -2.0169 42 1 2.9972 -8.6680 -4.6203 43 1 6.6257 -6.6920 -3.8513 44 1 5.6205 -3.9713 -2.2025 45 1 7.0685 -4.8161 -1.5021 46 1 1.9832 -2.0211 -0.0006 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:18 Heat of formation + Delta-G solvation = 68.346806 kcal Electronic energy + Delta-G solvation = -28165.599878 eV Core-core repulsion = 24252.565935 eV Total energy + Delta-G solvation = -3913.033943 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.97120 -42.71354 -41.07176 -39.33446 -37.92648 -35.49279 -34.19091 -33.76206 -32.73372 -30.40597 -29.33508 -29.03792 -27.45473 -26.75485 -26.42137 -24.21769 -22.72891 -22.25487 -21.83130 -21.02838 -20.53063 -20.07501 -19.44780 -18.35627 -17.82416 -17.15587 -16.89357 -16.54187 -16.43390 -15.99158 -15.66913 -15.47879 -15.32285 -15.21863 -14.90962 -14.77097 -14.59931 -14.40517 -14.30620 -14.21552 -13.76107 -13.65049 -13.56248 -13.46592 -13.41857 -13.14847 -12.82781 -12.65143 -12.43153 -12.36021 -11.77433 -11.64615 -11.38785 -11.07826 -10.91535 -10.76864 -10.50627 -10.23798 -9.59918 -9.45432 -9.01058 -4.87657 0.30838 1.14678 1.27099 1.53494 1.70692 1.88526 1.91740 2.04161 2.10183 2.21447 2.22216 3.35052 3.44619 3.50467 3.65857 3.72946 3.78768 3.82846 3.87504 3.92306 4.06558 4.10320 4.10940 4.22801 4.34402 4.45520 4.49671 4.55165 4.59909 4.65394 4.67143 4.73347 4.77015 4.78520 4.79997 4.91454 4.96230 4.96967 5.00847 5.08941 5.14482 5.25335 5.34460 5.49379 5.66398 5.81903 5.82673 6.30237 6.31916 6.48348 6.49918 7.03815 7.15878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.099 3.901 3 C -0.222 4.222 4 C -0.039 4.039 5 O -0.550 6.550 6 Si 0.738 3.262 7 C -0.080 4.080 8 C -0.093 4.093 9 C -0.075 4.075 10 C 0.590 3.410 11 O -0.564 6.564 12 N -0.701 5.701 13 C 0.111 3.889 14 H 0.089 0.911 15 C -0.116 4.116 16 C -0.115 4.115 17 H 0.092 0.908 18 C 0.110 3.890 19 N -0.451 5.451 20 C -0.046 4.046 21 C -0.068 4.068 22 N -0.547 5.547 23 C 0.173 3.827 24 C -0.148 4.148 25 N -0.520 5.520 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.377 0.623 31 H -0.269 1.269 32 H -0.303 1.303 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.203 0.797 42 H 0.171 0.829 43 H 0.220 0.780 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -5.504 7.924 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.021 4.021 3 C -0.228 4.228 4 C -0.149 4.149 5 O -0.359 6.359 6 Si 0.643 3.357 7 C -0.089 4.089 8 C -0.150 4.150 9 C -0.187 4.187 10 C 0.380 3.620 11 O -0.443 6.443 12 N -0.352 5.352 13 C 0.005 3.995 14 H 0.107 0.893 15 C -0.154 4.154 16 C -0.134 4.134 17 H 0.111 0.889 18 C -0.011 4.011 19 N -0.133 5.133 20 C -0.180 4.180 21 C -0.215 4.215 22 N -0.267 5.267 23 C -0.110 4.110 24 C -0.187 4.187 25 N -0.119 5.119 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.147 0.853 30 H 0.226 0.774 31 H -0.194 1.194 32 H -0.231 1.231 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.220 0.780 42 H 0.189 0.811 43 H 0.236 0.764 44 H 0.069 0.931 45 H 0.124 0.876 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.833 -4.594 7.435 9.543 hybrid contribution 0.163 -0.338 -0.678 0.775 sum -3.670 -4.932 6.757 9.135 Atomic orbital electron populations 1.20665 0.84822 1.05648 1.04313 1.20735 0.94887 0.84817 1.01677 1.19458 0.92016 0.95742 1.15628 1.24388 1.05501 0.90927 0.94082 1.86568 1.29143 1.80493 1.39651 0.94416 0.79513 0.77440 0.84340 1.19847 0.94976 0.91846 1.02222 1.20525 0.94886 0.97376 1.02250 1.19845 0.83703 0.93594 1.21539 1.17169 0.87177 0.82112 0.75576 1.90820 1.25714 1.75766 1.52010 1.45400 1.10125 1.04641 1.75054 1.21911 0.88977 0.90726 0.97849 0.89257 1.23283 1.04267 0.92585 0.95310 1.22914 1.00115 0.92955 0.97391 0.88943 1.22241 1.01155 0.96682 0.81042 1.45754 1.16685 1.42330 1.08533 1.23161 0.91882 1.04332 0.98598 1.22646 0.98986 1.07039 0.92818 1.70239 1.05889 1.16518 1.34005 1.25356 1.01461 1.04161 0.79996 1.23563 1.01330 0.96968 0.96831 1.41758 1.04171 1.09244 1.56687 0.89900 0.88973 0.88003 0.85332 0.77357 1.19398 1.23052 0.91203 0.91462 0.91938 0.75638 0.86280 0.89098 0.86973 0.86640 0.78015 0.81131 0.76409 0.93140 0.87622 0.72848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.93 9.98 71.24 0.71 1.65 16 2 C 0.10 -0.32 7.13 41.34 0.29 -0.02 16 3 C -0.22 -0.31 4.66 -20.12 -0.09 -0.41 16 4 C -0.04 -0.04 2.85 71.24 0.20 0.17 16 5 O -0.55 -3.06 12.88 -148.98 -1.92 -4.98 16 6 Si 0.74 0.64 30.98 68.60 2.13 2.77 16 7 C -0.08 -0.41 5.82 -19.56 -0.11 -0.52 16 8 C -0.09 -0.62 7.71 71.23 0.55 -0.07 16 9 C -0.07 -0.20 7.06 40.35 0.28 0.08 16 10 C 0.59 2.68 7.79 86.45 0.67 3.36 16 11 O -0.56 -7.13 14.41 -4.34 -0.06 -7.19 16 12 N -0.70 2.56 5.26 -444.00 -2.33 0.23 16 13 C 0.11 -0.54 4.32 45.52 0.20 -0.34 16 14 H 0.09 -0.01 7.46 -2.38 -0.02 -0.03 16 15 C -0.12 1.40 7.39 31.12 0.23 1.63 16 16 C -0.11 1.22 3.84 -10.26 -0.04 1.18 16 17 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 18 C 0.11 -1.20 5.99 86.38 0.52 -0.68 16 19 N -0.45 1.40 2.75 -529.04 -1.46 -0.06 16 20 C -0.05 0.07 11.58 83.09 0.96 1.03 16 21 C -0.07 -0.35 11.87 83.53 0.99 0.64 16 22 N -0.55 -5.32 11.25 -200.31 -2.25 -7.57 16 23 C 0.17 0.42 12.56 180.27 2.26 2.68 16 24 C -0.15 0.88 7.43 31.12 0.23 1.11 16 25 N -0.52 2.37 5.99 -171.93 -1.03 1.34 16 26 H 0.08 -0.73 8.14 -2.38 -0.02 -0.75 16 27 H 0.09 -1.25 8.14 -2.39 -0.02 -1.27 16 28 H 0.10 -1.17 7.25 -2.39 -0.02 -1.18 16 29 H 0.13 -0.39 6.65 -2.39 -0.02 -0.41 16 30 H 0.38 0.88 6.58 -74.06 -0.49 0.40 16 31 H -0.27 -1.35 5.05 99.48 0.50 -0.85 16 32 H -0.30 -2.39 7.11 99.48 0.71 -1.69 16 33 H 0.07 0.50 7.16 -2.39 -0.02 0.48 16 34 H 0.07 0.69 6.50 -2.38 -0.02 0.68 16 35 H 0.06 0.25 5.08 -2.39 -0.01 0.24 16 36 H 0.41 -3.96 7.83 -92.71 -0.73 -4.69 16 37 H 0.12 -1.73 8.10 -2.39 -0.02 -1.75 16 38 H 0.09 -1.23 8.14 -2.38 -0.02 -1.25 16 39 H 0.11 -1.48 7.84 -2.39 -0.02 -1.50 16 40 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 41 H 0.20 -1.73 8.06 -2.91 -0.02 -1.76 16 42 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 43 H 0.22 -0.70 8.06 -2.91 -0.02 -0.72 16 44 H 0.05 -0.03 8.14 -2.39 -0.02 -0.04 16 45 H 0.11 -0.83 7.90 -2.39 -0.02 -0.85 16 46 H 0.43 -5.04 8.19 -92.70 -0.76 -5.80 16 Total: 0.00 -28.70 373.22 -0.17 -28.87 By element: Atomic # 1 Polarization: -23.79 SS G_CDS: -1.10 Total: -24.89 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.86 Total: 11.48 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -7.07 Total: -6.06 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.98 Total: -12.16 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: 2.13 Total: 2.77 kcal Total: -28.70 -0.17 -28.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.217 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds