Wall clock time and date at job start Sun Mar 7 2021 04:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35659 * 116.99844 * 2 1 4 4 C 1.38411 * 120.12008 * 359.97438 * 3 2 1 5 5 C 1.38725 * 120.03252 * 180.02562 * 4 3 2 6 6 O 1.35712 * 119.86495 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99802 * 359.97438 * 6 5 4 8 8 C 1.39152 * 120.27035 * 0.02562 * 5 4 3 9 9 C 1.50703 * 119.87637 * 179.97438 * 8 5 4 10 10 O 1.42900 * 109.47406 * 285.00763 * 9 8 5 11 11 Si 1.86297 * 109.47139 * 165.00278 * 9 8 5 12 12 C 1.37579 * 120.24471 * 359.74480 * 8 5 4 13 13 C 1.39823 * 119.96064 * 0.51100 * 12 8 5 14 14 C 1.47295 * 120.13357 * 179.76881 * 13 12 8 15 15 O 1.21625 * 120.00088 * 179.72139 * 14 13 12 16 16 N 1.34777 * 120.00568 * 359.71742 * 14 13 12 17 17 C 1.46489 * 120.00658 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.85008 * 336.20258 * 17 16 14 19 19 C 1.53783 * 113.68978 * 107.46703 * 17 16 14 20 20 C 1.53781 * 87.08361 * 89.13073 * 19 17 16 21 21 H 1.08997 * 113.68745 * 270.87639 * 20 19 17 22 22 C 1.52994 * 113.61574 * 139.98113 * 20 19 17 23 23 N 1.46499 * 109.47010 * 87.50372 * 22 20 19 24 24 C 1.36887 * 126.39910 * 90.00068 * 23 22 20 25 25 C 1.34672 * 106.81700 * 179.97438 * 24 23 22 26 26 N 1.34127 * 108.01948 * 0.22851 * 25 24 23 27 27 C 1.30502 * 109.25683 * 359.61488 * 26 25 24 28 28 C 1.53778 * 113.61871 * 205.00170 * 17 16 14 29 29 H 1.08996 * 109.47372 * 59.99891 * 1 2 3 30 30 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47091 * 299.99951 * 1 2 3 32 32 H 1.08000 * 119.98404 * 0.04931 * 4 3 2 33 33 H 1.08998 * 109.47018 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47270 * 300.00376 * 7 6 5 35 35 H 1.08999 * 109.47034 * 60.00366 * 7 6 5 36 36 H 1.09000 * 109.46661 * 45.00585 * 9 8 5 37 37 H 0.96694 * 113.99846 * 179.97438 * 10 9 8 38 38 H 1.48502 * 109.99697 * 60.00020 * 11 9 8 39 39 H 1.48499 * 110.00175 * 181.32238 * 11 9 8 40 40 H 1.07997 * 120.02075 * 180.25389 * 12 8 5 41 41 H 0.97007 * 119.99163 * 0.02562 * 16 14 13 42 42 H 1.09004 * 113.61568 * 334.57683 * 19 17 16 43 43 H 1.09004 * 113.61562 * 203.67778 * 19 17 16 44 44 H 1.08996 * 109.47208 * 327.50067 * 22 20 19 45 45 H 1.08994 * 109.46968 * 207.50193 * 22 20 19 46 46 H 1.07996 * 126.58790 * 0.02562 * 24 23 22 47 47 H 1.08002 * 125.98510 * 179.97438 * 25 24 23 48 48 H 1.08003 * 125.64479 * 180.14464 * 27 26 25 49 49 H 1.09001 * 113.61843 * 156.25394 * 28 17 16 50 50 H 1.09003 * 113.61199 * 25.34653 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2934 2.3711 -0.0005 5 6 1.9250 3.6062 -0.0011 6 8 1.1849 4.7438 -0.0021 7 6 -0.2361 4.5931 -0.0032 8 6 3.3144 3.6835 -0.0016 9 6 3.9913 5.0300 -0.0028 10 8 3.8932 5.6114 -1.3044 11 14 5.7862 4.8230 0.4513 12 6 4.0723 2.5353 0.0037 13 6 3.4461 1.2852 -0.0012 14 6 4.2538 0.0535 -0.0007 15 8 3.7066 -1.0327 0.0002 16 7 5.5994 0.1300 -0.0013 17 6 6.4028 -1.0950 -0.0002 18 1 5.8666 -1.9525 0.4062 19 6 7.0946 -1.3813 -1.3435 20 6 8.2751 -0.5436 -0.8246 21 1 8.1911 0.5192 -1.0515 22 6 9.6440 -1.1223 -1.1880 23 7 10.0513 -0.6233 -2.5038 24 6 10.7688 0.5152 -2.7544 25 6 10.9207 0.5939 -4.0902 26 7 10.3083 -0.4649 -4.6405 27 6 9.7897 -1.2011 -3.6960 28 6 7.8087 -0.9092 0.5945 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2147 2.3165 -0.0001 33 1 -0.7058 5.5768 -0.0044 34 1 -0.5426 4.0434 -0.8932 35 1 -0.5440 4.0443 0.8868 36 1 3.5056 5.6814 0.7237 37 1 4.3082 6.4816 -1.3788 38 1 6.4598 3.9367 -0.5317 39 1 6.4576 6.1471 0.4848 40 1 5.1504 2.5996 0.0074 41 1 6.0359 0.9963 -0.0017 42 1 6.5868 -0.9371 -2.1997 43 1 7.3383 -2.4331 -1.4937 44 1 9.5830 -2.2102 -1.2148 45 1 10.3770 -0.8178 -0.4411 46 1 11.1420 1.2152 -2.0216 47 1 11.4406 1.3751 -4.6248 48 1 9.2388 -2.1183 -3.8437 49 1 8.2477 -1.8319 0.9741 50 1 7.8775 -0.0837 1.3030 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:23 Heat of formation + Delta-G solvation = -3.326616 kcal Electronic energy + Delta-G solvation = -34600.918711 eV Core-core repulsion = 29984.612162 eV Total energy + Delta-G solvation = -4616.306549 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.90382 -42.06847 -41.06859 -40.09663 -39.17314 -38.37182 -37.11322 -35.31624 -33.84766 -32.34936 -31.63737 -30.30945 -29.09215 -28.93455 -28.17834 -26.88808 -26.09060 -25.02973 -24.01634 -22.76674 -22.16258 -21.80084 -21.52193 -20.39632 -19.94422 -18.77763 -18.55287 -18.35828 -18.03587 -17.31439 -17.08821 -16.85500 -16.57382 -16.56011 -16.34475 -15.92036 -15.78240 -15.66438 -15.49722 -15.37502 -15.01243 -14.87864 -14.64248 -14.31930 -14.25997 -14.15220 -13.88929 -13.82595 -13.66005 -13.55912 -13.49175 -12.94006 -12.91527 -12.62963 -12.54856 -12.45186 -12.18300 -11.94429 -11.79066 -11.63166 -11.48379 -10.77732 -10.75635 -10.46172 -10.42922 -10.03749 -9.89573 -9.36020 -9.12970 -5.09450 -0.19141 0.12465 1.17595 1.20251 1.45236 1.79197 1.84572 1.86925 2.04571 2.08531 2.15160 2.38344 2.66260 3.20705 3.28508 3.31876 3.48872 3.52942 3.64828 3.66300 3.74843 3.83738 3.89133 3.91281 3.96318 4.02060 4.04782 4.05181 4.10920 4.13963 4.15008 4.21469 4.29669 4.39972 4.41633 4.52529 4.52825 4.53892 4.61640 4.73077 4.78618 4.80775 4.88373 4.91398 4.93440 5.03555 5.06133 5.30394 5.38704 5.56422 5.90019 5.99856 6.28114 6.31757 6.46531 6.52774 7.26209 7.34827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.274 6.274 3 C 0.235 3.765 4 C -0.314 4.314 5 C 0.224 3.776 6 O -0.297 6.297 7 C 0.021 3.979 8 C -0.150 4.150 9 C -0.059 4.059 10 O -0.532 6.532 11 Si 0.676 3.324 12 C -0.007 4.007 13 C -0.210 4.210 14 C 0.571 3.429 15 O -0.515 6.515 16 N -0.717 5.717 17 C 0.126 3.874 18 H 0.109 0.891 19 C -0.148 4.148 20 C -0.131 4.131 21 H 0.096 0.904 22 C 0.114 3.886 23 N -0.457 5.457 24 C -0.059 4.059 25 C -0.030 4.030 26 N -0.497 5.497 27 C 0.184 3.816 28 C -0.136 4.136 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.378 0.622 38 H -0.253 1.253 39 H -0.256 1.256 40 H 0.139 0.861 41 H 0.396 0.604 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.172 0.828 47 H 0.168 0.832 48 H 0.202 0.798 49 H 0.102 0.898 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 2.531 7.092 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.186 3.814 4 C -0.333 4.333 5 C 0.176 3.824 6 O -0.208 6.208 7 C -0.073 4.073 8 C -0.151 4.151 9 C -0.169 4.169 10 O -0.339 6.339 11 Si 0.577 3.423 12 C -0.025 4.025 13 C -0.214 4.214 14 C 0.359 3.641 15 O -0.391 6.391 16 N -0.370 5.370 17 C 0.020 3.980 18 H 0.127 0.873 19 C -0.187 4.187 20 C -0.150 4.150 21 H 0.114 0.886 22 C -0.009 4.009 23 N -0.140 5.140 24 C -0.192 4.192 25 C -0.178 4.178 26 N -0.215 5.215 27 C -0.099 4.099 28 C -0.175 4.175 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.226 0.774 38 H -0.178 1.178 39 H -0.181 1.181 40 H 0.156 0.844 41 H 0.231 0.769 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.189 0.811 47 H 0.185 0.815 48 H 0.218 0.782 49 H 0.120 0.880 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.486 1.067 6.024 6.296 hybrid contribution -0.526 1.732 -0.005 1.811 sum -2.012 2.799 6.019 6.937 Atomic orbital electron populations 1.23246 0.78198 1.04865 1.01364 1.86396 1.21212 1.25001 1.85777 1.18702 0.90575 0.84424 0.87709 1.21279 1.01137 0.91411 1.19492 1.18698 0.90365 0.84732 0.88642 1.86129 1.19488 1.28589 1.86636 1.23216 0.77786 1.04632 1.01709 1.18299 0.90119 0.94170 1.12480 1.24530 1.10562 0.93640 0.88125 1.86624 1.80085 1.37451 1.29707 0.95423 0.74594 0.83227 0.89013 1.20802 0.99193 0.90003 0.92538 1.18973 0.90654 0.93380 1.18409 1.17773 0.81552 0.88615 0.76135 1.90850 1.71282 1.28624 1.48306 1.45555 1.05869 1.08842 1.76727 1.21717 0.90998 0.88668 0.96595 0.87272 1.23552 0.96063 1.00635 0.98457 1.23074 0.93504 1.00908 0.97543 0.88599 1.21970 0.96562 1.00179 0.82180 1.45586 1.40831 1.19569 1.07994 1.22736 1.04464 0.93087 0.98923 1.22343 1.04827 0.99274 0.91359 1.70318 1.13654 1.05667 1.31822 1.25002 1.04017 1.01270 0.79564 1.23351 0.95139 1.03441 0.95583 0.92404 0.87448 0.92330 0.83677 0.87535 0.92221 0.92152 0.90482 0.77433 1.17765 1.18104 0.84424 0.76855 0.90693 0.88668 0.88436 0.88749 0.81067 0.81481 0.78170 0.87992 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.27 -0.99 8.56 -40.60 -0.35 -1.34 16 3 C 0.24 0.70 6.70 -38.73 -0.26 0.44 16 4 C -0.31 -0.36 8.01 -39.34 -0.31 -0.68 16 5 C 0.22 0.40 6.67 -39.06 -0.26 0.14 16 6 O -0.30 -0.38 9.80 -18.84 -0.18 -0.56 16 7 C 0.02 -0.05 9.80 101.05 0.99 0.94 16 8 C -0.15 -0.22 5.31 -104.52 -0.55 -0.78 16 9 C -0.06 -0.01 2.36 36.01 0.08 0.08 16 10 O -0.53 -0.84 12.86 -35.23 -0.45 -1.30 16 11 Si 0.68 -1.16 30.18 -169.99 -5.13 -6.29 16 12 C -0.01 -0.01 8.14 -39.23 -0.32 -0.32 16 13 C -0.21 -0.57 5.89 -104.83 -0.62 -1.19 16 14 C 0.57 2.00 7.76 -12.58 -0.10 1.90 16 15 O -0.52 -3.62 14.75 -16.67 -0.25 -3.86 16 16 N -0.72 -0.08 5.22 -54.14 -0.28 -0.37 16 17 C 0.13 -0.13 4.32 -67.12 -0.29 -0.42 16 18 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 19 C -0.15 0.23 7.43 -25.92 -0.19 0.04 16 20 C -0.13 0.40 3.84 -89.81 -0.35 0.06 16 21 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 22 C 0.11 -0.37 5.99 -4.05 -0.02 -0.39 16 23 N -0.46 -0.04 2.75 -118.58 -0.33 -0.36 16 24 C -0.06 -0.05 11.58 -16.56 -0.19 -0.24 16 25 C -0.03 -0.10 11.87 -17.81 -0.21 -0.31 16 26 N -0.50 -2.56 11.25 -14.66 -0.16 -2.72 16 27 C 0.18 0.37 12.56 -90.38 -1.14 -0.76 16 28 C -0.14 0.53 7.39 -25.92 -0.19 0.34 16 29 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 30 H 0.11 -0.20 8.14 -51.93 -0.42 -0.63 16 31 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 32 H 0.15 -0.18 4.50 -52.49 -0.24 -0.42 16 33 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 34 H 0.06 -0.16 7.65 -51.93 -0.40 -0.56 16 35 H 0.06 -0.21 7.65 -51.93 -0.40 -0.61 16 36 H 0.08 -0.06 7.82 -51.93 -0.41 -0.47 16 37 H 0.38 -0.90 8.74 45.56 0.40 -0.50 16 38 H -0.25 -0.04 6.75 56.52 0.38 0.34 16 39 H -0.26 -0.09 7.11 56.52 0.40 0.31 16 40 H 0.14 -0.19 3.20 -52.49 -0.17 -0.36 16 41 H 0.40 -0.76 6.72 -40.82 -0.27 -1.04 16 42 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.09 -0.26 7.90 -51.93 -0.41 -0.67 16 44 H 0.10 -0.43 7.84 -51.93 -0.41 -0.84 16 45 H 0.09 -0.41 8.14 -51.93 -0.42 -0.84 16 46 H 0.17 -0.33 8.06 -52.49 -0.42 -0.75 16 47 H 0.17 0.24 8.06 -52.49 -0.42 -0.18 16 48 H 0.20 -0.17 8.06 -52.48 -0.42 -0.59 16 49 H 0.10 -0.52 8.10 -51.93 -0.42 -0.94 16 50 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 LS Contribution 410.55 15.07 6.19 6.19 Total: 0.00 -12.68 410.55 -10.81 -23.49 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: -6.92 Total: -12.70 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.94 Total: -0.18 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -0.77 Total: -3.45 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -1.23 Total: -7.06 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.13 Total: -6.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -12.68 -10.81 -23.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.159 kcal (2) G-P(sol) polarization free energy of solvation -12.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds