Wall clock time and date at job start Sun Mar 7 2021 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35659 * 116.99844 * 2 1 4 4 C 1.38411 * 120.12008 * 359.97438 * 3 2 1 5 5 C 1.38725 * 120.03252 * 180.02562 * 4 3 2 6 6 O 1.35712 * 119.86495 * 179.97438 * 5 4 3 7 7 C 1.42900 * 116.99802 * 359.97438 * 6 5 4 8 8 C 1.39152 * 120.27035 * 0.02562 * 5 4 3 9 9 C 1.50703 * 119.87637 * 179.97438 * 8 5 4 10 10 O 1.42900 * 109.47406 * 285.00763 * 9 8 5 11 11 Si 1.86297 * 109.47139 * 165.00278 * 9 8 5 12 12 C 1.37579 * 120.24471 * 359.74480 * 8 5 4 13 13 C 1.39823 * 119.96064 * 0.51100 * 12 8 5 14 14 C 1.47295 * 120.13357 * 179.76881 * 13 12 8 15 15 O 1.21625 * 120.00088 * 179.72139 * 14 13 12 16 16 N 1.34777 * 120.00568 * 359.71742 * 14 13 12 17 17 C 1.46489 * 120.00658 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.85008 * 336.20258 * 17 16 14 19 19 C 1.53783 * 113.68978 * 107.46703 * 17 16 14 20 20 C 1.53781 * 87.08361 * 89.13073 * 19 17 16 21 21 H 1.08997 * 113.68745 * 270.87639 * 20 19 17 22 22 C 1.52994 * 113.61574 * 139.98113 * 20 19 17 23 23 N 1.46499 * 109.47010 * 87.50372 * 22 20 19 24 24 C 1.36887 * 126.39910 * 90.00068 * 23 22 20 25 25 C 1.34672 * 106.81700 * 179.97438 * 24 23 22 26 26 N 1.34127 * 108.01948 * 0.22851 * 25 24 23 27 27 C 1.30502 * 109.25683 * 359.61488 * 26 25 24 28 28 C 1.53778 * 113.61871 * 205.00170 * 17 16 14 29 29 H 1.08996 * 109.47372 * 59.99891 * 1 2 3 30 30 H 1.09006 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47091 * 299.99951 * 1 2 3 32 32 H 1.08000 * 119.98404 * 0.04931 * 4 3 2 33 33 H 1.08998 * 109.47018 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47270 * 300.00376 * 7 6 5 35 35 H 1.08999 * 109.47034 * 60.00366 * 7 6 5 36 36 H 1.09000 * 109.46661 * 45.00585 * 9 8 5 37 37 H 0.96694 * 113.99846 * 179.97438 * 10 9 8 38 38 H 1.48502 * 109.99697 * 60.00020 * 11 9 8 39 39 H 1.48499 * 110.00175 * 181.32238 * 11 9 8 40 40 H 1.07997 * 120.02075 * 180.25389 * 12 8 5 41 41 H 0.97007 * 119.99163 * 0.02562 * 16 14 13 42 42 H 1.09004 * 113.61568 * 334.57683 * 19 17 16 43 43 H 1.09004 * 113.61562 * 203.67778 * 19 17 16 44 44 H 1.08996 * 109.47208 * 327.50067 * 22 20 19 45 45 H 1.08994 * 109.46968 * 207.50193 * 22 20 19 46 46 H 1.07996 * 126.58790 * 0.02562 * 24 23 22 47 47 H 1.08002 * 125.98510 * 179.97438 * 25 24 23 48 48 H 1.08003 * 125.64479 * 180.14464 * 27 26 25 49 49 H 1.09001 * 113.61843 * 156.25394 * 28 17 16 50 50 H 1.09003 * 113.61199 * 25.34653 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2934 2.3711 -0.0005 5 6 1.9250 3.6062 -0.0011 6 8 1.1849 4.7438 -0.0021 7 6 -0.2361 4.5931 -0.0032 8 6 3.3144 3.6835 -0.0016 9 6 3.9913 5.0300 -0.0028 10 8 3.8932 5.6114 -1.3044 11 14 5.7862 4.8230 0.4513 12 6 4.0723 2.5353 0.0037 13 6 3.4461 1.2852 -0.0012 14 6 4.2538 0.0535 -0.0007 15 8 3.7066 -1.0327 0.0002 16 7 5.5994 0.1300 -0.0013 17 6 6.4028 -1.0950 -0.0002 18 1 5.8666 -1.9525 0.4062 19 6 7.0946 -1.3813 -1.3435 20 6 8.2751 -0.5436 -0.8246 21 1 8.1911 0.5192 -1.0515 22 6 9.6440 -1.1223 -1.1880 23 7 10.0513 -0.6233 -2.5038 24 6 10.7688 0.5152 -2.7544 25 6 10.9207 0.5939 -4.0902 26 7 10.3083 -0.4649 -4.6405 27 6 9.7897 -1.2011 -3.6960 28 6 7.8087 -0.9092 0.5945 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2147 2.3165 -0.0001 33 1 -0.7058 5.5768 -0.0044 34 1 -0.5426 4.0434 -0.8932 35 1 -0.5440 4.0443 0.8868 36 1 3.5056 5.6814 0.7237 37 1 4.3082 6.4816 -1.3788 38 1 6.4598 3.9367 -0.5317 39 1 6.4576 6.1471 0.4848 40 1 5.1504 2.5996 0.0074 41 1 6.0359 0.9963 -0.0017 42 1 6.5868 -0.9371 -2.1997 43 1 7.3383 -2.4331 -1.4937 44 1 9.5830 -2.2102 -1.2148 45 1 10.3770 -0.8178 -0.4411 46 1 11.1420 1.2152 -2.0216 47 1 11.4406 1.3751 -4.6248 48 1 9.2388 -2.1183 -3.8437 49 1 8.2477 -1.8319 0.9741 50 1 7.8775 -0.0837 1.3030 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:22 Heat of formation + Delta-G solvation = -4.761824 kcal Electronic energy + Delta-G solvation = -34600.980947 eV Core-core repulsion = 29984.612162 eV Total energy + Delta-G solvation = -4616.368784 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.94557 -42.13994 -41.06304 -40.12697 -39.25106 -38.41194 -37.18479 -35.35174 -33.92858 -32.40696 -31.68533 -30.37988 -29.01254 -28.84899 -28.10308 -26.68714 -26.11057 -25.05321 -23.97925 -22.78286 -22.24712 -21.81558 -21.60608 -20.33885 -19.95691 -18.82333 -18.57639 -18.34268 -18.05109 -17.36183 -17.11515 -16.83804 -16.55936 -16.49832 -16.37020 -15.87752 -15.80105 -15.77164 -15.50422 -15.34316 -15.02265 -14.89409 -14.66346 -14.37312 -14.23063 -14.15501 -13.90387 -13.76331 -13.60971 -13.46180 -13.37953 -12.81684 -12.75863 -12.56317 -12.52739 -12.31391 -12.17019 -11.92994 -11.69631 -11.65798 -11.32054 -10.99743 -10.90373 -10.46851 -10.44103 -10.11476 -9.94606 -9.44241 -9.22377 -4.96132 -0.29656 0.04044 1.16219 1.26384 1.56414 1.67810 1.90422 1.94531 2.04957 2.08742 2.15301 2.23212 2.54191 3.30071 3.40612 3.48886 3.51942 3.64389 3.67826 3.74602 3.83385 3.84848 3.88542 4.06253 4.10440 4.13797 4.14171 4.21122 4.26167 4.26621 4.28111 4.29001 4.41402 4.54878 4.60838 4.62111 4.65798 4.72754 4.73302 4.79079 4.79800 4.83813 4.92032 5.00520 5.02346 5.04801 5.18750 5.26069 5.36718 5.60445 5.83587 6.00250 6.25427 6.32536 6.46796 6.61700 7.16810 7.19792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.310 4.310 5 C 0.214 3.786 6 O -0.311 6.311 7 C 0.011 3.989 8 C -0.163 4.163 9 C -0.076 4.076 10 O -0.556 6.556 11 Si 0.760 3.240 12 C 0.000 4.000 13 C -0.230 4.230 14 C 0.567 3.433 15 O -0.560 6.560 16 N -0.705 5.705 17 C 0.111 3.889 18 H 0.090 0.910 19 C -0.150 4.150 20 C -0.120 4.120 21 H 0.087 0.913 22 C 0.111 3.889 23 N -0.451 5.451 24 C -0.047 4.047 25 C -0.069 4.069 26 N -0.548 5.548 27 C 0.174 3.826 28 C -0.115 4.115 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.392 0.608 38 H -0.275 1.275 39 H -0.281 1.281 40 H 0.157 0.843 41 H 0.407 0.593 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.202 0.798 47 H 0.171 0.829 48 H 0.221 0.779 49 H 0.122 0.878 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 3.103 8.838 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.169 3.831 4 C -0.329 4.329 5 C 0.166 3.834 6 O -0.223 6.223 7 C -0.083 4.083 8 C -0.164 4.164 9 C -0.184 4.184 10 O -0.366 6.366 11 Si 0.663 3.337 12 C -0.018 4.018 13 C -0.234 4.234 14 C 0.356 3.644 15 O -0.440 6.440 16 N -0.357 5.357 17 C 0.005 3.995 18 H 0.108 0.892 19 C -0.188 4.188 20 C -0.139 4.139 21 H 0.106 0.894 22 C -0.010 4.010 23 N -0.133 5.133 24 C -0.181 4.181 25 C -0.215 4.215 26 N -0.267 5.267 27 C -0.109 4.109 28 C -0.154 4.154 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.242 0.758 38 H -0.202 1.202 39 H -0.208 1.208 40 H 0.174 0.826 41 H 0.244 0.756 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.219 0.781 47 H 0.188 0.812 48 H 0.237 0.763 49 H 0.140 0.860 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.796 1.667 7.790 8.006 hybrid contribution -0.839 1.604 -0.566 1.897 sum -1.636 3.271 7.224 8.097 Atomic orbital electron populations 1.23488 0.76445 1.05841 1.02684 1.86360 1.23275 1.25738 1.86001 1.18957 0.91000 0.84800 0.88337 1.21425 1.02089 0.90646 1.18787 1.18909 0.90821 0.85091 0.88553 1.86112 1.21121 1.28549 1.86486 1.23484 0.76168 1.05975 1.02625 1.18600 0.90468 0.94964 1.12374 1.24886 1.12591 0.93090 0.87814 1.86571 1.80839 1.38671 1.30545 0.94437 0.71327 0.80661 0.87247 1.20919 0.99999 0.89178 0.91743 1.19130 0.90984 0.93721 1.19537 1.17997 0.82510 0.88291 0.75614 1.90812 1.72272 1.30083 1.50800 1.45495 1.05011 1.09935 1.75280 1.21898 0.92145 0.87697 0.97721 0.89162 1.23582 0.96686 1.01595 0.96976 1.22939 0.93017 1.00056 0.97871 0.89426 1.22250 0.96641 1.01208 0.80915 1.45770 1.39884 1.18987 1.08664 1.23160 1.03123 0.93227 0.98599 1.22631 1.06335 0.99743 0.92840 1.70235 1.15385 1.07123 1.33926 1.25367 1.03862 1.01690 0.79976 1.23303 0.92048 1.04897 0.95133 0.91325 0.86770 0.90676 0.81686 0.86056 0.91754 0.90761 0.89727 0.75780 1.20215 1.20784 0.82646 0.75610 0.93436 0.87407 0.86733 0.86493 0.78110 0.81186 0.76307 0.85961 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.74 8.56 -68.79 -0.59 -3.33 16 3 C 0.22 1.62 6.70 22.82 0.15 1.77 16 4 C -0.31 -0.90 8.01 22.43 0.18 -0.73 16 5 C 0.21 0.86 6.67 22.61 0.15 1.01 16 6 O -0.31 -0.80 9.80 -90.34 -0.89 -1.68 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.55 5.31 -19.80 -0.11 -0.66 16 9 C -0.08 -0.02 2.36 71.24 0.17 0.15 16 10 O -0.56 -1.90 12.86 -148.98 -1.92 -3.81 16 11 Si 0.76 -3.17 30.18 68.60 2.07 -1.10 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.59 5.89 -20.00 -0.12 -1.70 16 14 C 0.57 5.00 7.76 86.63 0.67 5.68 16 15 O -0.56 -9.38 14.75 16.85 0.25 -9.13 16 16 N -0.70 -0.71 5.22 -443.44 -2.31 -3.02 16 17 C 0.11 -0.20 4.32 45.52 0.20 0.00 16 18 H 0.09 0.22 7.46 -2.39 -0.02 0.20 16 19 C -0.15 0.45 7.43 31.12 0.23 0.68 16 20 C -0.12 0.91 3.84 -10.27 -0.04 0.87 16 21 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 22 C 0.11 -0.98 5.99 86.38 0.52 -0.46 16 23 N -0.45 0.39 2.75 -529.08 -1.46 -1.07 16 24 C -0.05 -0.05 11.58 83.09 0.96 0.92 16 25 C -0.07 -0.51 11.87 83.52 0.99 0.48 16 26 N -0.55 -6.37 11.25 -200.31 -2.25 -8.63 16 27 C 0.17 0.76 12.56 180.26 2.26 3.02 16 28 C -0.12 1.13 7.39 31.12 0.23 1.36 16 29 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 30 H 0.11 -0.33 8.14 -2.38 -0.02 -0.35 16 31 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 32 H 0.17 -0.43 4.50 -2.91 -0.01 -0.44 16 33 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.06 -0.38 7.65 -2.39 -0.02 -0.40 16 35 H 0.07 -0.58 7.65 -2.39 -0.02 -0.60 16 36 H 0.08 -0.15 7.82 -2.39 -0.02 -0.17 16 37 H 0.39 -1.81 8.74 -74.06 -0.65 -2.45 16 38 H -0.28 0.13 6.75 99.48 0.67 0.80 16 39 H -0.28 -0.01 7.11 99.48 0.71 0.69 16 40 H 0.16 -0.44 3.20 -2.91 -0.01 -0.45 16 41 H 0.41 -1.56 6.72 -92.70 -0.62 -2.19 16 42 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.11 -0.62 7.90 -2.38 -0.02 -0.64 16 44 H 0.11 -1.34 7.84 -2.39 -0.02 -1.36 16 45 H 0.12 -1.46 8.14 -2.39 -0.02 -1.48 16 46 H 0.20 -1.22 8.06 -2.91 -0.02 -1.24 16 47 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 48 H 0.22 -0.33 8.06 -2.91 -0.02 -0.35 16 49 H 0.12 -1.61 8.10 -2.39 -0.02 -1.63 16 50 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 Total: 0.00 -32.96 410.55 1.50 -31.46 By element: Atomic # 1 Polarization: -14.16 SS G_CDS: -0.27 Total: -14.43 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 8.86 Total: 14.74 kcal Atomic # 7 Polarization: -6.69 SS G_CDS: -6.02 Total: -12.71 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -3.14 Total: -17.96 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.07 Total: -1.10 kcal Total: -32.96 1.50 -31.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.694 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds