Wall clock time and date at job start Sun Mar 7 2021 04:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47005 * 2 1 4 4 C 1.50706 * 109.47186 * 119.99534 * 2 1 3 5 5 C 1.38410 * 119.89393 * 244.72708 * 4 2 1 6 6 C 1.38247 * 120.34215 * 179.76296 * 5 4 2 7 7 C 1.38283 * 120.11189 * 0.51691 * 6 5 4 8 8 F 1.35103 * 120.10704 * 179.72473 * 7 6 5 9 9 C 1.39858 * 119.77962 * 359.73683 * 7 6 5 10 10 C 1.47695 * 120.16295 * 180.02562 * 9 7 6 11 11 O 1.21569 * 120.00094 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00156 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00224 * 180.02562 * 12 10 9 14 14 H 1.08993 * 112.85507 * 336.20005 * 13 12 10 15 15 C 1.53782 * 113.61331 * 107.50817 * 13 12 10 16 16 C 1.53781 * 87.08401 * 89.11491 * 15 13 12 17 17 H 1.09003 * 113.69294 * 270.87722 * 16 15 13 18 18 C 1.52999 * 113.61437 * 139.97772 * 16 15 13 19 19 N 1.46504 * 109.47036 * 87.50525 * 18 16 15 20 20 C 1.36883 * 126.39824 * 269.71506 * 19 18 16 21 21 C 1.34674 * 106.81538 * 179.83778 * 20 19 18 22 22 N 1.34129 * 108.02079 * 0.42326 * 21 20 19 23 23 C 1.30498 * 109.25554 * 359.72920 * 22 21 20 24 24 C 1.53784 * 113.61477 * 205.00259 * 13 12 10 25 25 C 1.37901 * 119.88709 * 65.00042 * 4 2 1 26 26 H 0.96698 * 113.99763 * 300.00212 * 1 2 3 27 27 H 1.08992 * 109.47403 * 239.99786 * 2 1 3 28 28 H 1.48503 * 109.99841 * 178.68058 * 3 2 1 29 29 H 1.48504 * 109.99775 * 299.99979 * 3 2 1 30 30 H 1.08003 * 119.82822 * 0.02562 * 5 4 2 31 31 H 1.07994 * 119.94291 * 180.23362 * 6 5 4 32 32 H 0.97005 * 119.99760 * 0.02562 * 12 10 9 33 33 H 1.09002 * 113.61557 * 203.66100 * 15 13 12 34 34 H 1.08999 * 113.61498 * 334.56916 * 15 13 12 35 35 H 1.09003 * 109.47396 * 207.50494 * 18 16 15 36 36 H 1.09000 * 109.47471 * 327.50540 * 18 16 15 37 37 H 1.07995 * 126.58637 * 359.97438 * 20 19 18 38 38 H 1.07997 * 125.98487 * 180.18691 * 21 20 19 39 39 H 1.08000 * 125.64869 * 179.97438 * 23 22 21 40 40 H 1.08999 * 113.61132 * 25.43763 * 24 13 12 41 41 H 1.09003 * 113.61346 * 156.33928 * 24 13 12 42 42 H 1.08004 * 120.06354 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 2.6443 -0.0103 2.1884 6 6 3.1053 -0.6516 3.3231 7 6 2.8654 -2.0015 3.5029 8 9 3.3207 -2.6293 4.6092 9 6 2.1500 -2.7148 2.5357 10 6 1.8884 -4.1567 2.7194 11 8 2.2956 -4.7266 3.7130 12 7 1.1982 -4.8408 1.7854 13 6 0.9383 -6.2709 1.9679 14 1 1.6586 -6.7509 2.6302 15 6 -0.5260 -6.5919 2.3109 16 6 -0.7781 -6.6849 0.7967 17 1 -1.0541 -5.7347 0.3395 18 6 -1.7134 -7.8291 0.4003 19 7 -3.1025 -7.3674 0.4605 20 6 -3.9339 -7.4329 1.5459 21 6 -5.1107 -6.8981 1.1681 22 7 -5.0038 -6.5250 -0.1158 23 6 -3.8037 -6.8030 -0.5463 24 6 0.7134 -7.0293 0.6491 25 6 1.6841 -2.0569 1.3958 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 -0.8899 28 1 3.5346 1.7703 0.0321 29 1 1.5614 2.4679 -1.2085 30 1 2.8379 1.0432 2.0507 31 1 3.6577 -0.0983 4.0681 32 1 0.8737 -4.3861 0.9924 33 1 -0.6543 -7.5397 2.8339 34 1 -1.0528 -5.7675 2.7913 35 1 -1.4817 -8.1527 -0.6145 36 1 -1.5779 -8.6640 1.0877 37 1 -3.6917 -7.8341 2.5189 38 1 -5.9880 -6.7921 1.7890 39 1 -3.4328 -6.6136 -1.5427 40 1 1.1873 -6.5579 -0.2119 41 1 0.9239 -8.0966 0.7179 42 1 1.1317 -2.6017 0.6445 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:26 Heat of formation + Delta-G solvation = 16.534874 kcal Electronic energy + Delta-G solvation = -27798.530038 eV Core-core repulsion = 23662.070395 eV Total energy + Delta-G solvation = -4136.459644 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.05324 -42.94139 -41.64483 -40.45463 -39.35085 -37.46069 -35.48341 -34.17245 -32.52486 -32.23530 -30.40814 -28.80556 -26.77224 -26.64920 -25.73771 -24.26925 -23.10429 -22.23858 -21.86416 -21.69703 -20.40681 -19.28547 -18.52216 -18.30516 -18.20490 -17.37868 -17.05873 -16.92928 -16.50051 -16.28732 -16.01914 -15.88991 -15.72485 -15.61953 -15.04420 -14.94358 -14.80849 -14.61590 -14.44424 -14.38912 -14.20047 -13.80962 -13.69525 -13.48307 -13.24018 -12.90237 -12.76857 -12.37469 -12.18939 -11.90700 -11.74336 -11.38641 -11.28282 -10.90898 -10.50297 -10.48389 -10.42954 -10.16223 -9.86663 -9.43582 -4.97867 -0.54626 -0.07351 1.16996 1.29736 1.53611 1.66011 1.85848 1.93840 2.01095 2.24415 2.42519 3.00530 3.31351 3.34188 3.42857 3.44555 3.54799 3.63634 3.68193 3.75973 3.90413 3.96924 4.03481 4.06334 4.17026 4.24881 4.39783 4.48034 4.55106 4.59673 4.64396 4.71992 4.72674 4.75575 4.79874 4.82502 4.90949 4.95088 4.96948 5.09021 5.10479 5.36013 5.47751 5.55887 5.83545 6.27173 6.33851 6.75836 6.97302 7.17595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.067 4.067 3 Si 0.769 3.231 4 C -0.135 4.135 5 C -0.049 4.049 6 C -0.151 4.151 7 C 0.133 3.867 8 F -0.136 7.136 9 C -0.190 4.190 10 C 0.556 3.444 11 O -0.570 6.570 12 N -0.693 5.693 13 C 0.106 3.894 14 H 0.086 0.914 15 C -0.145 4.145 16 C -0.115 4.115 17 H 0.094 0.906 18 C 0.111 3.889 19 N -0.452 5.452 20 C -0.047 4.047 21 C -0.066 4.066 22 N -0.545 5.545 23 C 0.175 3.825 24 C -0.117 4.117 25 C -0.026 4.026 26 H 0.397 0.603 27 H 0.119 0.881 28 H -0.280 1.280 29 H -0.302 1.302 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.193 0.807 38 H 0.170 0.830 39 H 0.229 0.771 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 2.034 -2.815 4.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.177 4.177 3 Si 0.675 3.325 4 C -0.135 4.135 5 C -0.066 4.066 6 C -0.170 4.170 7 C 0.113 3.887 8 F -0.115 7.115 9 C -0.194 4.194 10 C 0.344 3.656 11 O -0.449 6.449 12 N -0.345 5.345 13 C 0.001 3.999 14 H 0.104 0.896 15 C -0.183 4.183 16 C -0.134 4.134 17 H 0.112 0.888 18 C -0.010 4.010 19 N -0.134 5.134 20 C -0.181 4.181 21 C -0.213 4.213 22 N -0.264 5.264 23 C -0.108 4.108 24 C -0.155 4.155 25 C -0.044 4.044 26 H 0.247 0.753 27 H 0.136 0.864 28 H -0.206 1.206 29 H -0.230 1.230 30 H 0.187 0.813 31 H 0.186 0.814 32 H 0.251 0.749 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.210 0.790 38 H 0.187 0.813 39 H 0.245 0.755 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.798 2.159 -3.507 4.979 hybrid contribution 0.521 -0.892 0.497 1.147 sum 3.319 1.267 -3.010 4.656 Atomic orbital electron populations 1.86502 1.16836 1.82064 1.50630 1.25131 0.85504 1.10517 0.96581 0.93823 0.78121 0.75085 0.85500 1.20486 1.00585 0.94272 0.98171 1.21392 0.93244 1.00925 0.91085 1.21415 1.03218 0.91411 1.00938 1.18213 0.95555 0.91782 0.83146 1.91562 1.86331 1.82953 1.50620 1.20046 1.06985 0.93824 0.98548 1.18326 0.77738 0.86712 0.82805 1.90840 1.52837 1.70861 1.30411 1.45450 1.55536 1.09981 1.23563 1.21957 0.97467 0.80407 1.00053 0.89556 1.23526 0.95463 1.02737 0.96620 1.22926 0.95126 0.99127 0.96259 0.88785 1.22220 0.75629 0.97075 1.06123 1.45742 1.12514 1.44987 1.10143 1.23055 0.91813 1.08603 0.94630 1.22596 0.99580 1.05954 0.93187 1.70242 1.19781 1.23898 1.12512 1.25513 0.88099 1.00533 0.96649 1.23293 0.93589 1.02442 0.96201 1.21170 0.94746 0.94286 0.94237 0.75295 0.86356 1.20638 1.23003 0.81313 0.81352 0.74883 0.87779 0.92847 0.86287 0.87316 0.78954 0.81299 0.75517 0.89073 0.86239 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.16 12.83 -148.98 -1.91 1.25 16 2 C -0.07 0.47 2.80 71.24 0.20 0.67 16 3 Si 0.77 -5.70 29.79 68.60 2.04 -3.65 16 4 C -0.13 0.79 5.35 -19.90 -0.11 0.69 16 5 C -0.05 0.34 8.66 22.31 0.19 0.54 16 6 C -0.15 0.44 10.01 22.28 0.22 0.66 16 7 C 0.13 0.62 7.29 22.67 0.17 0.78 16 8 F -0.14 -1.59 15.55 44.97 0.70 -0.89 16 9 C -0.19 -0.54 5.88 -20.05 -0.12 -0.66 16 10 C 0.56 3.66 7.77 86.74 0.67 4.34 16 11 O -0.57 -9.10 14.94 -3.93 -0.06 -9.16 16 12 N -0.69 0.96 5.21 -443.06 -2.31 -1.35 16 13 C 0.11 -0.31 4.32 45.52 0.20 -0.11 16 14 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 15 C -0.14 0.67 7.43 31.12 0.23 0.90 16 16 C -0.12 1.06 3.84 -10.27 -0.04 1.02 16 17 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 18 C 0.11 -1.08 5.99 86.38 0.52 -0.57 16 19 N -0.45 1.00 2.75 -529.05 -1.46 -0.45 16 20 C -0.05 -0.04 11.58 83.09 0.96 0.93 16 21 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 22 N -0.55 -5.26 11.25 -200.31 -2.25 -7.51 16 23 C 0.17 0.31 12.56 180.26 2.26 2.58 16 24 C -0.12 1.21 7.39 31.12 0.23 1.44 16 25 C -0.03 0.09 9.17 22.52 0.21 0.30 16 26 H 0.40 -5.16 8.70 -74.06 -0.64 -5.81 16 27 H 0.12 -0.83 7.96 -2.39 -0.02 -0.85 16 28 H -0.28 0.83 7.11 99.48 0.71 1.54 16 29 H -0.30 -0.42 7.11 99.48 0.71 0.28 16 30 H 0.17 -2.16 4.88 -2.91 -0.01 -2.17 16 31 H 0.17 -1.20 8.06 -2.91 -0.02 -1.22 16 32 H 0.41 -2.89 6.73 -92.70 -0.62 -3.51 16 33 H 0.10 -0.67 7.90 -2.39 -0.02 -0.69 16 34 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.12 -1.61 8.14 -2.39 -0.02 -1.63 16 36 H 0.11 -1.28 7.84 -2.39 -0.02 -1.30 16 37 H 0.19 -0.90 8.06 -2.91 -0.02 -0.92 16 38 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.23 -1.24 8.06 -2.91 -0.02 -1.27 16 40 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 41 H 0.12 -1.56 8.10 -2.39 -0.02 -1.58 16 42 H 0.16 -1.24 6.40 -2.91 -0.02 -1.26 16 Total: 0.00 -30.51 359.22 1.39 -29.12 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -0.15 Total: -21.41 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.79 Total: 14.06 kcal Atomic # 7 Polarization: -3.29 SS G_CDS: -6.02 Total: -9.31 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.97 Total: -7.91 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.70 Total: -0.89 kcal Atomic # 14 Polarization: -5.70 SS G_CDS: 2.04 Total: -3.65 kcal Total: -30.51 1.39 -29.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.652 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds