Wall clock time and date at job start Sun Mar 7 2021 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.46946 * 2 1 4 4 C 1.50701 * 109.47059 * 239.99806 * 2 1 3 5 5 C 1.38231 * 120.00426 * 300.00123 * 4 2 1 6 6 C 1.38229 * 120.00386 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99711 * 359.95269 * 6 5 4 8 8 C 1.50701 * 119.99671 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47262 * 90.00084 * 8 7 6 10 10 O 1.21286 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.90705 * 336.25937 * 12 11 9 14 14 C 1.53782 * 113.61142 * 107.50467 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.18830 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.46494 * 109.47391 * 87.55384 * 17 15 14 19 19 C 1.36883 * 126.39433 * 269.71595 * 18 17 15 20 20 C 1.34674 * 106.81550 * 179.83671 * 19 18 17 21 21 N 1.34129 * 108.01880 * 0.42221 * 20 19 18 22 22 C 1.30495 * 109.25683 * 359.73125 * 21 20 19 23 23 C 1.53781 * 113.61619 * 205.00312 * 12 11 9 24 24 C 1.38233 * 120.00211 * 0.27796 * 7 6 5 25 25 C 1.38239 * 119.99752 * 359.51169 * 24 7 6 26 26 H 0.96702 * 114.00272 * 300.00200 * 1 2 3 27 27 H 1.08993 * 109.47096 * 119.99807 * 2 1 3 28 28 H 1.48503 * 110.00032 * 299.99777 * 3 2 1 29 29 H 1.48497 * 110.00054 * 61.31746 * 3 2 1 30 30 H 1.08000 * 119.99635 * 359.97017 * 5 4 2 31 31 H 1.08001 * 120.00331 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47362 * 329.99893 * 8 7 6 33 33 H 1.09003 * 109.47088 * 209.99916 * 8 7 6 34 34 H 0.97001 * 120.00013 * 0.02562 * 11 9 8 35 35 H 1.08997 * 113.61668 * 203.66381 * 14 12 11 36 36 H 1.08998 * 113.61674 * 334.48890 * 14 12 11 37 37 H 1.09002 * 109.47053 * 207.55709 * 17 15 14 38 38 H 1.09004 * 109.47121 * 327.55345 * 17 15 14 39 39 H 1.07994 * 126.59513 * 359.97438 * 19 18 17 40 40 H 1.07999 * 125.99035 * 180.11515 * 20 19 18 41 41 H 1.07997 * 125.64719 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61445 * 25.43587 * 23 12 11 43 43 H 1.09002 * 113.61408 * 156.25317 * 23 12 11 44 44 H 1.08001 * 119.99989 * 179.72472 * 24 7 6 45 45 H 1.08000 * 119.99647 * 180.24939 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4492 6 6 2.0586 -2.6857 -2.5776 7 6 2.8530 -2.0137 -3.4878 8 6 3.3553 -2.7241 -4.7182 9 6 2.3625 -2.5512 -5.8387 10 8 1.3471 -1.9134 -5.6561 11 7 2.6032 -3.1044 -7.0438 12 6 1.6377 -2.9368 -8.1328 13 1 0.6286 -2.7290 -7.7769 14 6 2.1127 -1.9747 -9.2344 15 6 2.7502 -3.1975 -9.9191 16 1 3.7732 -3.3937 -9.5982 17 6 2.5925 -3.2008 -11.4410 18 7 3.7016 -2.4612 -12.0485 19 6 3.7265 -1.1222 -12.3314 20 6 4.9302 -0.8615 -12.8763 21 7 5.6177 -2.0117 -12.9334 22 6 4.8881 -2.9742 -12.4393 23 6 1.7009 -4.0525 -9.1892 24 6 3.1909 -0.6917 -3.2666 25 6 2.7261 -0.0386 -2.1404 26 1 -0.3934 0.4417 0.7650 27 1 1.7923 -0.5138 0.8899 28 1 1.5615 2.4679 -1.2085 29 1 1.5878 2.4585 1.2242 30 1 0.9769 -2.5588 -0.7381 31 1 1.7981 -3.7198 -2.7483 32 1 3.4768 -3.7853 -4.5009 33 1 4.3154 -2.3018 -5.0151 34 1 3.4154 -3.6142 -7.1899 35 1 1.2986 -1.5305 -9.8070 36 1 2.8378 -1.2382 -8.8881 37 1 2.5985 -4.2283 -11.8047 38 1 1.6488 -2.7259 -11.7095 39 1 2.9343 -0.4110 -12.1501 40 1 5.2787 0.1036 -13.2133 41 1 5.1843 -4.0094 -12.3563 42 1 2.0944 -4.9943 -8.8067 43 1 0.7736 -4.1773 -9.7485 44 1 3.8152 -0.1680 -3.9755 45 1 2.9868 0.9955 -1.9697 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:31 Heat of formation + Delta-G solvation = 53.201605 kcal Electronic energy + Delta-G solvation = -26509.612594 eV Core-core repulsion = 22688.659295 eV Total energy + Delta-G solvation = -3820.953298 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.95715 -41.48442 -40.53503 -39.37536 -37.68861 -35.40764 -34.26262 -33.70513 -31.88235 -30.43401 -29.99988 -28.72452 -26.98879 -25.82827 -24.27022 -23.75353 -22.42298 -22.18291 -21.85333 -21.34582 -20.48014 -18.60467 -18.50603 -18.08402 -17.63490 -17.04863 -16.93581 -16.61736 -16.29795 -15.94864 -15.87475 -15.25135 -15.13785 -15.00171 -14.84900 -14.66576 -14.59716 -14.33268 -14.22923 -13.97527 -13.86139 -13.70696 -13.36247 -13.20793 -13.09743 -12.86371 -12.53847 -12.18003 -11.89723 -11.87168 -11.65933 -11.57958 -10.94591 -10.83872 -10.49451 -10.47836 -10.16185 -9.79293 -9.54119 -9.40719 -4.94725 0.29212 0.53749 1.15371 1.30826 1.58797 1.61995 1.80182 1.99009 2.00314 2.32960 2.76900 3.11525 3.23049 3.37550 3.45118 3.54472 3.59779 3.80638 3.82592 3.84313 3.87417 3.94147 3.95920 4.01902 4.07394 4.21297 4.22606 4.35894 4.43595 4.44065 4.44480 4.53001 4.56500 4.64508 4.73131 4.74590 4.79691 4.84125 4.91733 5.03883 5.13214 5.33550 5.42328 5.45045 5.62016 5.63387 5.85466 6.05138 6.26252 6.37478 6.46644 7.17506 7.20603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.076 4.076 3 Si 0.681 3.319 4 C -0.072 4.072 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.065 4.065 8 C -0.102 4.102 9 C 0.516 3.484 10 O -0.523 6.523 11 N -0.717 5.717 12 C 0.122 3.878 13 H 0.106 0.894 14 C -0.146 4.146 15 C -0.128 4.128 16 H 0.098 0.902 17 C 0.113 3.887 18 N -0.457 5.457 19 C -0.053 4.053 20 C -0.031 4.031 21 N -0.495 5.495 22 C 0.178 3.822 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.112 4.112 26 H 0.379 0.621 27 H 0.076 0.924 28 H -0.255 1.255 29 H -0.262 1.262 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.202 0.798 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -3.822 1.551 4.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.186 4.186 3 Si 0.582 3.418 4 C -0.072 4.072 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.303 3.697 10 O -0.397 6.397 11 N -0.369 5.369 12 C 0.016 3.984 13 H 0.124 0.876 14 C -0.184 4.184 15 C -0.147 4.147 16 H 0.116 0.884 17 C -0.009 4.009 18 N -0.140 5.140 19 C -0.186 4.186 20 C -0.179 4.179 21 N -0.213 5.213 22 C -0.104 4.104 23 C -0.175 4.175 24 C -0.117 4.117 25 C -0.130 4.130 26 H 0.227 0.773 27 H 0.094 0.906 28 H -0.180 1.180 29 H -0.187 1.187 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.189 0.811 40 H 0.186 0.814 41 H 0.219 0.781 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.510 -2.982 0.886 3.458 hybrid contribution -1.588 -0.317 0.684 1.758 sum -0.078 -3.299 1.570 3.654 Atomic orbital electron populations 1.86608 1.17811 1.80096 1.49712 1.24809 0.84466 1.10939 0.98355 0.95151 0.91688 0.74718 0.80243 1.19240 0.98193 0.94376 0.95405 1.20926 0.98389 0.93971 0.97476 1.20987 0.97088 1.00001 0.94106 1.19236 0.98381 0.94270 0.94669 1.20684 0.98799 1.03021 0.91702 1.20636 0.87430 0.78666 0.82996 1.90777 1.27648 1.39143 1.82155 1.45688 1.24342 1.55955 1.10964 1.21750 0.94342 0.96165 0.86135 0.87605 1.23540 1.00967 0.96646 0.97280 1.23082 1.00187 0.98289 0.93174 0.88413 1.21961 0.88749 0.97623 0.92608 1.45576 1.14444 1.08255 1.45728 1.22739 1.02081 0.85263 1.08541 1.22352 0.92212 0.97727 1.05610 1.70313 1.31611 0.99271 1.20113 1.25016 0.82970 1.00439 1.01999 1.23333 0.99757 0.97750 0.96660 1.20877 1.00054 0.93771 0.97018 1.20875 0.98591 0.99202 0.94295 0.77324 0.90583 1.17967 1.18699 0.85754 0.85980 0.87618 0.87597 0.76430 0.88932 0.90761 0.88530 0.88721 0.81108 0.81428 0.78100 0.90158 0.88160 0.85713 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.29 12.74 -35.23 -0.45 -1.74 16 2 C -0.08 -0.07 2.81 36.01 0.10 0.03 16 3 Si 0.68 0.02 29.79 -169.99 -5.06 -5.04 16 4 C -0.07 -0.18 5.42 -104.62 -0.57 -0.74 16 5 C -0.09 -0.22 9.61 -39.59 -0.38 -0.61 16 6 C -0.10 -0.18 9.70 -39.58 -0.38 -0.56 16 7 C -0.07 -0.08 4.37 -104.62 -0.46 -0.53 16 8 C -0.10 0.18 5.83 -29.03 -0.17 0.02 16 9 C 0.52 0.35 7.82 -10.99 -0.09 0.26 16 10 O -0.52 -2.92 15.64 5.55 0.09 -2.83 16 11 N -0.72 1.57 5.26 -53.02 -0.28 1.29 16 12 C 0.12 -0.24 4.32 -67.12 -0.29 -0.53 16 13 H 0.11 0.03 7.47 -51.93 -0.39 -0.36 16 14 C -0.15 0.36 7.44 -25.82 -0.19 0.17 16 15 C -0.13 0.53 3.85 -89.71 -0.35 0.18 16 16 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 17 C 0.11 -0.44 5.99 -4.05 -0.02 -0.47 16 18 N -0.46 0.34 2.75 -118.58 -0.33 0.02 16 19 C -0.05 -0.02 11.58 -16.56 -0.19 -0.21 16 20 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 21 N -0.50 -2.06 11.25 -14.67 -0.17 -2.23 16 22 C 0.18 0.16 12.56 -90.38 -1.14 -0.98 16 23 C -0.14 0.62 7.38 -25.92 -0.19 0.43 16 24 C -0.10 -0.14 9.70 -39.58 -0.38 -0.52 16 25 C -0.11 -0.20 8.67 -39.58 -0.34 -0.54 16 26 H 0.38 -0.67 8.74 45.56 0.40 -0.27 16 27 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 28 H -0.26 -0.90 7.11 56.52 0.40 -0.50 16 29 H -0.26 -0.48 7.11 56.52 0.40 -0.08 16 30 H 0.12 0.21 8.06 -52.49 -0.42 -0.22 16 31 H 0.12 0.00 8.06 -52.49 -0.42 -0.43 16 32 H 0.11 -0.42 8.09 -51.93 -0.42 -0.84 16 33 H 0.11 -0.41 8.08 -51.93 -0.42 -0.83 16 34 H 0.40 -1.94 8.70 -40.82 -0.36 -2.29 16 35 H 0.09 -0.27 7.90 -51.93 -0.41 -0.68 16 36 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 37 H 0.10 -0.51 8.14 -51.93 -0.42 -0.93 16 38 H 0.09 -0.43 7.85 -51.93 -0.41 -0.84 16 39 H 0.17 -0.34 8.06 -52.49 -0.42 -0.77 16 40 H 0.17 0.14 8.06 -52.49 -0.42 -0.28 16 41 H 0.20 -0.48 8.06 -52.49 -0.42 -0.90 16 42 H 0.08 -0.39 8.14 -51.93 -0.42 -0.82 16 43 H 0.10 -0.52 8.10 -51.93 -0.42 -0.94 16 44 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 45 H 0.13 -0.01 4.88 -52.49 -0.26 -0.26 16 LS Contribution 379.28 15.07 5.72 5.72 Total: 0.00 -11.93 379.28 -12.25 -24.18 By element: Atomic # 1 Polarization: -7.94 SS G_CDS: -6.52 Total: -14.46 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -5.25 Total: -4.90 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.77 Total: -0.92 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.57 kcal Atomic # 14 Polarization: 0.02 SS G_CDS: -5.06 Total: -5.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -11.93 -12.25 -24.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.386 kcal (2) G-P(sol) polarization free energy of solvation -11.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds