Wall clock time and date at job start Sun Mar 7 2021 04:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.46946 * 2 1 4 4 C 1.50701 * 109.47059 * 239.99806 * 2 1 3 5 5 C 1.38231 * 120.00426 * 300.00123 * 4 2 1 6 6 C 1.38229 * 120.00386 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99711 * 359.95269 * 6 5 4 8 8 C 1.50701 * 119.99671 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47262 * 90.00084 * 8 7 6 10 10 O 1.21286 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.90705 * 336.25937 * 12 11 9 14 14 C 1.53782 * 113.61142 * 107.50467 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.18830 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.46494 * 109.47391 * 87.55384 * 17 15 14 19 19 C 1.36883 * 126.39433 * 269.71595 * 18 17 15 20 20 C 1.34674 * 106.81550 * 179.83671 * 19 18 17 21 21 N 1.34129 * 108.01880 * 0.42221 * 20 19 18 22 22 C 1.30495 * 109.25683 * 359.73125 * 21 20 19 23 23 C 1.53781 * 113.61619 * 205.00312 * 12 11 9 24 24 C 1.38233 * 120.00211 * 0.27796 * 7 6 5 25 25 C 1.38239 * 119.99752 * 359.51169 * 24 7 6 26 26 H 0.96702 * 114.00272 * 300.00200 * 1 2 3 27 27 H 1.08993 * 109.47096 * 119.99807 * 2 1 3 28 28 H 1.48503 * 110.00032 * 299.99777 * 3 2 1 29 29 H 1.48497 * 110.00054 * 61.31746 * 3 2 1 30 30 H 1.08000 * 119.99635 * 359.97017 * 5 4 2 31 31 H 1.08001 * 120.00331 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47362 * 329.99893 * 8 7 6 33 33 H 1.09003 * 109.47088 * 209.99916 * 8 7 6 34 34 H 0.97001 * 120.00013 * 0.02562 * 11 9 8 35 35 H 1.08997 * 113.61668 * 203.66381 * 14 12 11 36 36 H 1.08998 * 113.61674 * 334.48890 * 14 12 11 37 37 H 1.09002 * 109.47053 * 207.55709 * 17 15 14 38 38 H 1.09004 * 109.47121 * 327.55345 * 17 15 14 39 39 H 1.07994 * 126.59513 * 359.97438 * 19 18 17 40 40 H 1.07999 * 125.99035 * 180.11515 * 20 19 18 41 41 H 1.07997 * 125.64719 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61445 * 25.43587 * 23 12 11 43 43 H 1.09002 * 113.61408 * 156.25317 * 23 12 11 44 44 H 1.08001 * 119.99989 * 179.72472 * 24 7 6 45 45 H 1.08000 * 119.99647 * 180.24939 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4492 6 6 2.0586 -2.6857 -2.5776 7 6 2.8530 -2.0137 -3.4878 8 6 3.3553 -2.7241 -4.7182 9 6 2.3625 -2.5512 -5.8387 10 8 1.3471 -1.9134 -5.6561 11 7 2.6032 -3.1044 -7.0438 12 6 1.6377 -2.9368 -8.1328 13 1 0.6286 -2.7290 -7.7769 14 6 2.1127 -1.9747 -9.2344 15 6 2.7502 -3.1975 -9.9191 16 1 3.7732 -3.3937 -9.5982 17 6 2.5925 -3.2008 -11.4410 18 7 3.7016 -2.4612 -12.0485 19 6 3.7265 -1.1222 -12.3314 20 6 4.9302 -0.8615 -12.8763 21 7 5.6177 -2.0117 -12.9334 22 6 4.8881 -2.9742 -12.4393 23 6 1.7009 -4.0525 -9.1892 24 6 3.1909 -0.6917 -3.2666 25 6 2.7261 -0.0386 -2.1404 26 1 -0.3934 0.4417 0.7650 27 1 1.7923 -0.5138 0.8899 28 1 1.5615 2.4679 -1.2085 29 1 1.5878 2.4585 1.2242 30 1 0.9769 -2.5588 -0.7381 31 1 1.7981 -3.7198 -2.7483 32 1 3.4768 -3.7853 -4.5009 33 1 4.3154 -2.3018 -5.0151 34 1 3.4154 -3.6142 -7.1899 35 1 1.2986 -1.5305 -9.8070 36 1 2.8378 -1.2382 -8.8881 37 1 2.5985 -4.2283 -11.8047 38 1 1.6488 -2.7259 -11.7095 39 1 2.9343 -0.4110 -12.1501 40 1 5.2787 0.1036 -13.2133 41 1 5.1843 -4.0094 -12.3563 42 1 2.0944 -4.9943 -8.8067 43 1 0.7736 -4.1773 -9.7485 44 1 3.8152 -0.1680 -3.9755 45 1 2.9868 0.9955 -1.9697 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:30 Heat of formation + Delta-G solvation = 53.210172 kcal Electronic energy + Delta-G solvation = -26509.612222 eV Core-core repulsion = 22688.659295 eV Total energy + Delta-G solvation = -3820.952927 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.93482 -41.43306 -40.50956 -39.35866 -37.78755 -35.34589 -34.29295 -33.66653 -31.95485 -30.43765 -29.97426 -28.58949 -26.72585 -25.84245 -24.11799 -23.83048 -22.40778 -22.21063 -21.79476 -21.35274 -20.29353 -18.61112 -18.51801 -18.01070 -17.64527 -16.95909 -16.95008 -16.52212 -16.27299 -15.96358 -15.78157 -15.30646 -15.09787 -14.96586 -14.83740 -14.66722 -14.54942 -14.37615 -14.18571 -14.00017 -13.78724 -13.47322 -13.42004 -13.17402 -12.99944 -12.69839 -12.35165 -12.26539 -11.93616 -11.77572 -11.69896 -11.34089 -11.04235 -10.90440 -10.55298 -10.45880 -10.08075 -9.88928 -9.60693 -9.43491 -4.98171 0.21755 0.43943 1.17371 1.26122 1.55296 1.59117 1.91439 1.94189 2.11218 2.24643 2.72899 3.37511 3.39136 3.49582 3.62465 3.70311 3.79899 3.83183 3.89260 3.90909 4.01728 4.04073 4.05464 4.18248 4.27723 4.29992 4.43309 4.47712 4.52491 4.59635 4.60236 4.70283 4.70921 4.75064 4.80400 4.84220 4.98558 5.00782 5.02008 5.07175 5.18148 5.36079 5.37104 5.52869 5.56735 5.59295 5.83547 5.99917 6.34430 6.51829 6.55128 7.17875 7.24613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.087 4.087 3 Si 0.766 3.234 4 C -0.091 4.091 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.072 4.072 8 C -0.097 4.097 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.109 3.891 13 H 0.078 0.922 14 C -0.147 4.147 15 C -0.113 4.113 16 H 0.098 0.902 17 C 0.110 3.890 18 N -0.452 5.452 19 C -0.048 4.048 20 C -0.066 4.066 21 N -0.545 5.545 22 C 0.175 3.825 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.126 4.126 26 H 0.394 0.606 27 H 0.097 0.903 28 H -0.306 1.306 29 H -0.283 1.283 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.417 0.583 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.192 0.808 40 H 0.169 0.831 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.141 0.859 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -5.489 1.271 6.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.196 4.196 3 Si 0.671 3.329 4 C -0.092 4.092 5 C -0.126 4.126 6 C -0.133 4.133 7 C -0.073 4.073 8 C -0.136 4.136 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.355 5.355 12 C 0.003 3.997 13 H 0.096 0.904 14 C -0.186 4.186 15 C -0.132 4.132 16 H 0.116 0.884 17 C -0.011 4.011 18 N -0.133 5.133 19 C -0.182 4.182 20 C -0.213 4.213 21 N -0.264 5.264 22 C -0.107 4.107 23 C -0.157 4.157 24 C -0.129 4.129 25 C -0.143 4.143 26 H 0.244 0.756 27 H 0.115 0.885 28 H -0.234 1.234 29 H -0.210 1.210 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.209 0.791 40 H 0.187 0.813 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.034 -4.699 0.611 5.157 hybrid contribution -1.804 0.212 0.741 1.962 sum 0.229 -4.488 1.352 4.693 Atomic orbital electron populations 1.86562 1.18779 1.80653 1.51039 1.25050 0.83881 1.11905 0.98722 0.94214 0.90327 0.72183 0.76132 1.19504 0.98689 0.94701 0.96263 1.21107 0.98989 0.94378 0.98159 1.21254 0.97168 1.00824 0.94085 1.19577 0.97852 0.94398 0.95466 1.20761 0.98791 1.04575 0.89487 1.21075 0.86953 0.77768 0.84042 1.90758 1.30129 1.41937 1.83193 1.45586 1.24716 1.54999 1.10164 1.21825 0.93159 0.98155 0.86540 0.90356 1.23543 1.00782 0.96782 0.97455 1.22938 1.00161 0.97054 0.93035 0.88415 1.22221 0.88022 0.98589 0.92304 1.45738 1.14718 1.07910 1.44983 1.23034 1.01713 0.86174 1.07257 1.22590 0.93454 0.97877 1.07384 1.70243 1.33517 1.00494 1.22163 1.25536 0.83109 1.01070 1.01003 1.23263 1.00127 0.97190 0.95084 1.21207 1.00286 0.94244 0.97190 1.21118 0.98795 0.99846 0.94585 0.75551 0.88522 1.23448 1.20982 0.85689 0.84661 0.84890 0.85019 0.74569 0.88589 0.92740 0.86303 0.87683 0.79119 0.81337 0.75373 0.88896 0.86975 0.84127 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.27 12.74 -148.98 -1.90 -5.17 16 2 C -0.09 -0.23 2.81 71.24 0.20 -0.03 16 3 Si 0.77 0.56 29.79 68.60 2.04 2.61 16 4 C -0.09 -0.55 5.42 -19.87 -0.11 -0.66 16 5 C -0.11 -0.68 9.61 22.27 0.21 -0.46 16 6 C -0.12 -0.47 9.70 22.27 0.22 -0.26 16 7 C -0.07 -0.18 4.37 -19.86 -0.09 -0.27 16 8 C -0.10 0.45 5.83 29.10 0.17 0.62 16 9 C 0.51 0.74 7.82 87.66 0.69 1.42 16 10 O -0.58 -7.41 15.64 -3.05 -0.05 -7.46 16 11 N -0.70 3.52 5.26 -440.03 -2.32 1.20 16 12 C 0.11 -0.46 4.32 45.52 0.20 -0.26 16 13 H 0.08 0.15 7.47 -2.39 -0.02 0.13 16 14 C -0.15 0.78 7.44 31.18 0.23 1.01 16 15 C -0.11 1.14 3.85 -10.20 -0.04 1.10 16 16 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 17 C 0.11 -1.11 5.99 86.38 0.52 -0.59 16 18 N -0.45 1.22 2.75 -529.08 -1.46 -0.24 16 19 C -0.05 -0.02 11.58 83.09 0.96 0.94 16 20 C -0.07 -0.40 11.87 83.52 0.99 0.59 16 21 N -0.55 -4.91 11.25 -200.31 -2.25 -7.16 16 22 C 0.18 0.19 12.56 180.26 2.26 2.45 16 23 C -0.12 1.30 7.38 31.12 0.23 1.53 16 24 C -0.11 -0.37 9.70 22.27 0.22 -0.15 16 25 C -0.13 -0.58 8.67 22.27 0.19 -0.39 16 26 H 0.39 -1.11 8.74 -74.06 -0.65 -1.76 16 27 H 0.10 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H -0.31 -2.81 7.11 99.48 0.71 -2.11 16 29 H -0.28 -1.14 7.11 99.48 0.71 -0.43 16 30 H 0.13 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 32 H 0.13 -1.35 8.09 -2.39 -0.02 -1.37 16 33 H 0.13 -1.29 8.08 -2.39 -0.02 -1.31 16 34 H 0.42 -4.75 8.70 -92.71 -0.81 -5.56 16 35 H 0.10 -0.58 7.90 -2.39 -0.02 -0.60 16 36 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 38 H 0.10 -1.21 7.85 -2.38 -0.02 -1.23 16 39 H 0.19 -0.89 8.06 -2.91 -0.02 -0.92 16 40 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 41 H 0.23 -1.47 8.06 -2.91 -0.02 -1.49 16 42 H 0.09 -1.18 8.14 -2.39 -0.02 -1.20 16 43 H 0.11 -1.44 8.10 -2.39 -0.02 -1.46 16 44 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 45 H 0.14 0.13 4.88 -2.91 -0.01 0.12 16 Total: 0.00 -31.40 379.28 0.72 -30.68 By element: Atomic # 1 Polarization: -20.65 SS G_CDS: -0.41 Total: -21.06 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 7.06 Total: 6.60 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -6.03 Total: -6.20 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.95 Total: -12.63 kcal Atomic # 14 Polarization: 0.56 SS G_CDS: 2.04 Total: 2.61 kcal Total: -31.40 0.72 -30.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.886 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds