Wall clock time and date at job start Sun Mar 7 2021 04:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34459 * 126.48165 * 104.68373 * 4 2 1 6 6 N 1.36566 * 109.98310 * 179.87000 * 5 4 2 7 7 C 1.37826 * 109.86321 * 0.40966 * 6 5 4 8 8 C 1.38646 * 133.38459 * 179.81285 * 7 6 5 9 9 C 1.39324 * 119.66654 * 180.02562 * 8 7 6 10 10 C 1.47575 * 119.82891 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00257 * 359.97401 * 10 9 8 12 12 N 1.34783 * 119.99678 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99787 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84752 * 336.19334 * 13 12 10 15 15 C 1.53778 * 113.61646 * 107.49937 * 13 12 10 16 16 C 1.53781 * 87.08015 * 89.11383 * 15 13 12 17 17 H 1.09004 * 113.69283 * 270.87329 * 16 15 13 18 18 C 1.53002 * 113.61608 * 139.97938 * 16 15 13 19 19 N 1.46503 * 109.47030 * 87.50306 * 18 16 15 20 20 C 1.36878 * 126.39742 * 89.99963 * 19 18 16 21 21 C 1.34665 * 106.81960 * 180.02562 * 20 19 18 22 22 N 1.34131 * 108.02059 * 359.97438 * 21 20 19 23 23 C 1.30507 * 109.25486 * 359.72839 * 22 21 20 24 24 C 1.53782 * 87.08420 * 25.43421 * 16 15 13 25 25 C 1.40199 * 120.33644 * 359.95075 * 9 8 7 26 26 C 1.36235 * 120.37790 * 0.02562 * 25 9 8 27 27 C 1.39876 * 119.95963 * 0.02562 * 26 25 9 28 28 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 29 29 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 30 30 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 31 31 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 32 32 H 1.07998 * 125.00675 * 0.02793 * 5 4 2 33 33 H 0.97004 * 125.06995 * 180.17709 * 6 5 4 34 34 H 1.07993 * 120.16386 * 359.96597 * 8 7 6 35 35 H 0.97003 * 120.00206 * 359.97438 * 12 10 9 36 36 H 1.09000 * 113.61579 * 203.65944 * 15 13 12 37 37 H 1.09000 * 113.61497 * 334.57070 * 15 13 12 38 38 H 1.09000 * 109.47699 * 207.50358 * 18 16 15 39 39 H 1.08998 * 109.47108 * 327.50806 * 18 16 15 40 40 H 1.08001 * 126.58836 * 0.04047 * 20 19 18 41 41 H 1.08004 * 125.99376 * 180.02562 * 21 20 19 42 42 H 1.07993 * 125.64767 * 180.29080 * 23 22 21 43 43 H 1.08996 * 113.62037 * 220.02278 * 24 16 15 44 44 H 1.08992 * 113.69174 * 89.11909 * 24 16 15 45 45 H 1.08004 * 119.81063 * 180.02562 * 25 9 8 46 46 H 1.08004 * 120.02017 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4561 -0.1357 -2.3270 6 7 2.8025 -1.0944 -3.2359 7 6 2.4940 -2.3429 -2.7402 8 6 2.6311 -3.6277 -3.2430 9 6 2.2128 -4.7153 -2.4793 10 6 2.3565 -6.0844 -3.0111 11 8 2.8384 -6.2609 -4.1134 12 7 1.9535 -7.1390 -2.2750 13 6 2.0966 -8.4982 -2.8027 14 1 2.1379 -8.5272 -3.8915 15 6 3.2102 -9.3099 -2.1203 16 6 2.1497 -9.7599 -1.1016 17 1 2.0569 -9.0945 -0.2431 18 6 2.2693 -11.2320 -0.7020 19 7 3.1997 -11.3587 0.4226 20 6 2.8788 -11.3053 1.7521 21 6 4.0273 -11.4652 2.4369 22 7 5.0223 -11.6128 1.5496 23 6 4.5331 -11.5562 0.3410 24 6 1.1016 -9.5021 -2.1969 25 6 1.6566 -4.5158 -1.2079 26 6 1.5187 -3.2567 -0.7061 27 6 1.9329 -2.1546 -1.4612 28 1 -0.3934 0.4418 -0.7650 29 1 1.7923 -0.5138 0.8899 30 1 1.5616 2.4678 1.2086 31 1 3.5346 1.7703 -0.0322 32 1 2.5870 0.9271 -2.4672 33 1 3.2026 -0.9221 -4.1026 34 1 3.0590 -3.7845 -4.2220 35 1 1.5693 -6.9982 -1.3955 36 1 3.5976 -10.1224 -2.7349 37 1 3.9975 -8.6929 -1.6872 38 1 1.2900 -11.6094 -0.4077 39 1 2.6417 -11.8090 -1.5484 40 1 1.8938 -11.1627 2.1714 41 1 4.1293 -11.4739 3.5121 42 1 5.1010 -11.6489 -0.5728 43 1 0.1867 -9.0403 -1.8259 44 1 0.9115 -10.3664 -2.8333 45 1 1.3356 -5.3650 -0.6229 46 1 1.0898 -3.1097 0.2742 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:36 Heat of formation + Delta-G solvation = 91.587100 kcal Electronic energy + Delta-G solvation = -29657.471963 eV Core-core repulsion = 25516.304992 eV Total energy + Delta-G solvation = -4141.166970 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.93300 -42.51946 -41.35660 -39.68227 -37.88738 -37.46869 -35.42044 -33.90137 -33.28171 -30.77119 -30.70881 -30.30383 -28.84240 -26.95657 -26.56314 -25.26141 -23.89381 -23.66563 -22.19897 -21.83301 -21.65281 -20.86006 -20.45069 -19.48730 -18.59465 -18.24261 -17.68114 -17.22317 -17.01468 -16.59116 -16.33078 -16.10605 -15.88379 -15.61922 -15.50934 -15.24602 -15.11586 -14.97822 -14.80040 -14.73364 -14.67239 -14.34909 -14.23984 -14.02875 -13.80901 -13.61933 -13.19156 -13.01578 -12.65202 -12.50945 -12.34001 -12.26577 -11.94605 -11.86418 -11.54947 -10.99135 -10.80267 -10.78731 -10.46699 -10.37928 -10.15339 -9.39255 -9.38507 -8.84789 -5.12177 -0.30378 0.35757 1.17653 1.26504 1.33606 1.60294 1.81201 1.82734 1.95423 1.95711 2.13858 2.35873 2.88588 3.15073 3.25604 3.47186 3.51939 3.53418 3.59985 3.68871 3.73146 3.82130 3.84688 3.87999 3.98836 4.01579 4.05897 4.24852 4.28131 4.39144 4.44254 4.46629 4.47598 4.52199 4.59523 4.65725 4.71749 4.76105 4.83383 4.86581 4.94522 4.94880 5.19047 5.35860 5.39650 5.40166 5.49807 5.57581 5.87717 5.94854 6.28912 6.33075 6.40640 6.62598 7.16825 7.23681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.030 4.030 3 Si 0.685 3.315 4 C -0.211 4.211 5 C 0.078 3.922 6 N -0.584 5.584 7 C 0.081 3.919 8 C -0.055 4.055 9 C -0.123 4.123 10 C 0.568 3.432 11 O -0.535 6.535 12 N -0.710 5.710 13 C 0.123 3.877 14 H 0.108 0.892 15 C -0.147 4.147 16 C -0.129 4.129 17 H 0.097 0.903 18 C 0.113 3.887 19 N -0.457 5.457 20 C -0.059 4.059 21 C -0.030 4.030 22 N -0.496 5.496 23 C 0.183 3.817 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.072 4.072 27 C -0.063 4.063 28 H 0.377 0.623 29 H 0.111 0.889 30 H -0.254 1.254 31 H -0.256 1.256 32 H 0.179 0.821 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.401 0.599 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.202 0.798 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 3.114 -2.769 6.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.586 3.414 4 C -0.219 4.219 5 C -0.051 4.051 6 N -0.186 5.186 7 C -0.025 4.025 8 C -0.076 4.076 9 C -0.127 4.127 10 C 0.356 3.644 11 O -0.413 6.413 12 N -0.362 5.362 13 C 0.017 3.983 14 H 0.126 0.874 15 C -0.186 4.186 16 C -0.148 4.148 17 H 0.115 0.885 18 C -0.009 4.009 19 N -0.140 5.140 20 C -0.192 4.192 21 C -0.178 4.178 22 N -0.214 5.214 23 C -0.099 4.099 24 C -0.175 4.175 25 C -0.133 4.133 26 C -0.091 4.091 27 C -0.068 4.068 28 H 0.224 0.776 29 H 0.129 0.871 30 H -0.179 1.179 31 H -0.181 1.181 32 H 0.196 0.804 33 H 0.260 0.740 34 H 0.154 0.846 35 H 0.237 0.763 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.218 0.782 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.142 0.858 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.922 3.204 -2.617 5.065 hybrid contribution -0.756 -0.341 0.071 0.832 sum -3.678 2.863 -2.545 5.310 Atomic orbital electron populations 1.86508 1.17414 1.81746 1.49027 1.24336 0.84758 1.08900 0.96155 0.95283 0.80766 0.77299 0.88010 1.20739 1.10899 0.92103 0.98131 1.21760 0.99683 0.94353 0.89286 1.41724 1.54565 1.03984 1.18313 1.18070 1.03196 0.86322 0.94913 1.20073 0.99338 0.88077 1.00125 1.19382 1.05257 0.92207 0.95875 1.18154 0.77228 0.84507 0.84514 1.90796 1.44117 1.86173 1.20168 1.45549 1.64417 1.05255 1.20968 1.21773 0.96075 0.80627 0.99833 0.87352 1.23542 0.97189 1.00337 0.97529 1.23062 0.98147 0.95633 0.97988 0.88471 1.21967 0.93681 0.97113 0.88154 1.45581 1.08735 1.53120 1.06564 1.22741 1.01466 1.11998 0.82952 1.22352 0.88503 1.07250 0.99668 1.70325 1.32204 1.19741 0.99161 1.25004 0.81237 1.05108 0.98576 1.23343 0.97305 0.99596 0.97272 1.20659 1.00671 0.97303 0.94689 1.20203 0.98717 0.90486 0.99669 1.19181 1.00911 0.93102 0.93577 0.77576 0.87137 1.17874 1.18076 0.80391 0.73965 0.84573 0.76268 0.88637 0.90631 0.88747 0.88461 0.81027 0.81435 0.78187 0.90153 0.87984 0.85812 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.06 12.88 -35.23 -0.45 -0.39 16 2 C -0.03 0.02 3.06 36.01 0.11 0.13 16 3 Si 0.69 -1.44 30.76 -169.99 -5.23 -6.67 16 4 C -0.21 0.04 5.57 -102.74 -0.57 -0.53 16 5 C 0.08 -0.18 10.43 -16.78 -0.17 -0.35 16 6 N -0.58 0.95 6.07 -10.68 -0.06 0.89 16 7 C 0.08 0.09 7.26 -84.00 -0.61 -0.52 16 8 C -0.05 -0.10 9.61 -39.03 -0.37 -0.48 16 9 C -0.12 -0.21 5.87 -104.95 -0.62 -0.83 16 10 C 0.57 1.41 7.76 -12.45 -0.10 1.31 16 11 O -0.54 -3.18 15.91 5.29 0.08 -3.10 16 12 N -0.71 0.47 5.21 -54.04 -0.28 0.19 16 13 C 0.12 -0.18 4.32 -67.12 -0.29 -0.47 16 14 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 15 C -0.15 0.32 7.43 -25.92 -0.19 0.13 16 16 C -0.13 0.47 3.84 -89.81 -0.34 0.12 16 17 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 18 C 0.11 -0.41 5.99 -4.04 -0.02 -0.43 16 19 N -0.46 0.16 2.75 -118.58 -0.33 -0.16 16 20 C -0.06 -0.03 11.58 -16.56 -0.19 -0.22 16 21 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 22 N -0.50 -2.35 11.25 -14.66 -0.16 -2.51 16 23 C 0.18 0.29 12.56 -90.37 -1.14 -0.84 16 24 C -0.14 0.56 7.39 -25.91 -0.19 0.37 16 25 C -0.11 -0.02 9.46 -39.57 -0.37 -0.39 16 26 C -0.07 -0.07 10.03 -39.69 -0.40 -0.47 16 27 C -0.06 -0.10 6.35 -105.05 -0.67 -0.77 16 28 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 29 H 0.11 0.01 7.96 -51.93 -0.41 -0.40 16 30 H -0.25 -0.39 7.11 56.52 0.40 0.02 16 31 H -0.26 -0.12 7.11 56.52 0.40 0.28 16 32 H 0.18 -1.07 6.35 -52.49 -0.33 -1.40 16 33 H 0.42 -1.85 8.96 -40.82 -0.37 -2.21 16 34 H 0.14 0.22 7.62 -52.49 -0.40 -0.18 16 35 H 0.40 -1.12 6.69 -40.82 -0.27 -1.39 16 36 H 0.10 -0.30 7.90 -51.93 -0.41 -0.71 16 37 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 38 H 0.09 -0.43 8.14 -51.93 -0.42 -0.86 16 39 H 0.10 -0.46 7.84 -51.93 -0.41 -0.87 16 40 H 0.17 -0.40 8.06 -52.49 -0.42 -0.82 16 41 H 0.17 0.17 8.06 -52.48 -0.42 -0.25 16 42 H 0.20 -0.26 8.06 -52.49 -0.42 -0.68 16 43 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 44 H 0.10 -0.52 8.10 -51.93 -0.42 -0.95 16 45 H 0.12 -0.32 6.36 -52.48 -0.33 -0.65 16 46 H 0.13 -0.01 8.06 -52.48 -0.42 -0.43 16 LS Contribution 388.17 15.07 5.85 5.85 Total: 0.00 -12.46 388.17 -12.87 -25.33 By element: Atomic # 1 Polarization: -8.96 SS G_CDS: -5.93 Total: -14.89 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -6.36 Total: -4.53 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -0.84 Total: -1.60 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -0.37 Total: -3.49 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.23 Total: -6.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -12.46 -12.87 -25.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.918 kcal (2) G-P(sol) polarization free energy of solvation -12.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds