Wall clock time and date at job start Sun Mar 7 2021 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34459 * 126.48165 * 104.68373 * 4 2 1 6 6 N 1.36566 * 109.98310 * 179.87000 * 5 4 2 7 7 C 1.37826 * 109.86321 * 0.40966 * 6 5 4 8 8 C 1.38646 * 133.38459 * 179.81285 * 7 6 5 9 9 C 1.39324 * 119.66654 * 180.02562 * 8 7 6 10 10 C 1.47575 * 119.82891 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00257 * 359.97401 * 10 9 8 12 12 N 1.34783 * 119.99678 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99787 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84752 * 336.19334 * 13 12 10 15 15 C 1.53778 * 113.61646 * 107.49937 * 13 12 10 16 16 C 1.53781 * 87.08015 * 89.11383 * 15 13 12 17 17 H 1.09004 * 113.69283 * 270.87329 * 16 15 13 18 18 C 1.53002 * 113.61608 * 139.97938 * 16 15 13 19 19 N 1.46503 * 109.47030 * 87.50306 * 18 16 15 20 20 C 1.36878 * 126.39742 * 89.99963 * 19 18 16 21 21 C 1.34665 * 106.81960 * 180.02562 * 20 19 18 22 22 N 1.34131 * 108.02059 * 359.97438 * 21 20 19 23 23 C 1.30507 * 109.25486 * 359.72839 * 22 21 20 24 24 C 1.53782 * 87.08420 * 25.43421 * 16 15 13 25 25 C 1.40199 * 120.33644 * 359.95075 * 9 8 7 26 26 C 1.36235 * 120.37790 * 0.02562 * 25 9 8 27 27 C 1.39876 * 119.95963 * 0.02562 * 26 25 9 28 28 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 29 29 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 30 30 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 31 31 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 32 32 H 1.07998 * 125.00675 * 0.02793 * 5 4 2 33 33 H 0.97004 * 125.06995 * 180.17709 * 6 5 4 34 34 H 1.07993 * 120.16386 * 359.96597 * 8 7 6 35 35 H 0.97003 * 120.00206 * 359.97438 * 12 10 9 36 36 H 1.09000 * 113.61579 * 203.65944 * 15 13 12 37 37 H 1.09000 * 113.61497 * 334.57070 * 15 13 12 38 38 H 1.09000 * 109.47699 * 207.50358 * 18 16 15 39 39 H 1.08998 * 109.47108 * 327.50806 * 18 16 15 40 40 H 1.08001 * 126.58836 * 0.04047 * 20 19 18 41 41 H 1.08004 * 125.99376 * 180.02562 * 21 20 19 42 42 H 1.07993 * 125.64767 * 180.29080 * 23 22 21 43 43 H 1.08996 * 113.62037 * 220.02278 * 24 16 15 44 44 H 1.08992 * 113.69174 * 89.11909 * 24 16 15 45 45 H 1.08004 * 119.81063 * 180.02562 * 25 9 8 46 46 H 1.08004 * 120.02017 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4561 -0.1357 -2.3270 6 7 2.8025 -1.0944 -3.2359 7 6 2.4940 -2.3429 -2.7402 8 6 2.6311 -3.6277 -3.2430 9 6 2.2128 -4.7153 -2.4793 10 6 2.3565 -6.0844 -3.0111 11 8 2.8384 -6.2609 -4.1134 12 7 1.9535 -7.1390 -2.2750 13 6 2.0966 -8.4982 -2.8027 14 1 2.1379 -8.5272 -3.8915 15 6 3.2102 -9.3099 -2.1203 16 6 2.1497 -9.7599 -1.1016 17 1 2.0569 -9.0945 -0.2431 18 6 2.2693 -11.2320 -0.7020 19 7 3.1997 -11.3587 0.4226 20 6 2.8788 -11.3053 1.7521 21 6 4.0273 -11.4652 2.4369 22 7 5.0223 -11.6128 1.5496 23 6 4.5331 -11.5562 0.3410 24 6 1.1016 -9.5021 -2.1969 25 6 1.6566 -4.5158 -1.2079 26 6 1.5187 -3.2567 -0.7061 27 6 1.9329 -2.1546 -1.4612 28 1 -0.3934 0.4418 -0.7650 29 1 1.7923 -0.5138 0.8899 30 1 1.5616 2.4678 1.2086 31 1 3.5346 1.7703 -0.0322 32 1 2.5870 0.9271 -2.4672 33 1 3.2026 -0.9221 -4.1026 34 1 3.0590 -3.7845 -4.2220 35 1 1.5693 -6.9982 -1.3955 36 1 3.5976 -10.1224 -2.7349 37 1 3.9975 -8.6929 -1.6872 38 1 1.2900 -11.6094 -0.4077 39 1 2.6417 -11.8090 -1.5484 40 1 1.8938 -11.1627 2.1714 41 1 4.1293 -11.4739 3.5121 42 1 5.1010 -11.6489 -0.5728 43 1 0.1867 -9.0403 -1.8259 44 1 0.9115 -10.3664 -2.8333 45 1 1.3356 -5.3650 -0.6229 46 1 1.0898 -3.1097 0.2742 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:35 Heat of formation + Delta-G solvation = 90.492318 kcal Electronic energy + Delta-G solvation = -29657.519436 eV Core-core repulsion = 25516.304992 eV Total energy + Delta-G solvation = -4141.214444 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.94578 -42.48276 -41.35094 -39.66087 -37.87921 -37.45320 -35.42055 -33.93231 -33.25904 -30.76502 -30.70315 -30.34182 -28.73487 -26.73297 -26.49691 -25.22277 -23.81186 -23.67816 -22.25085 -21.81815 -21.68390 -20.80492 -20.32755 -19.46988 -18.53270 -18.19066 -17.61179 -17.22542 -16.97972 -16.52878 -16.28390 -16.05164 -15.94522 -15.57061 -15.43178 -15.20231 -15.09620 -14.96388 -14.81666 -14.76986 -14.66441 -14.31715 -14.21687 -14.02391 -13.64598 -13.42552 -13.12361 -12.82735 -12.65961 -12.35077 -12.30469 -12.29250 -11.94447 -11.73604 -11.36002 -11.18812 -10.90182 -10.81132 -10.47916 -10.30424 -10.16925 -9.43836 -9.39383 -8.81172 -4.98076 -0.35982 0.33274 1.16531 1.37385 1.40383 1.70741 1.85129 1.87715 1.94140 2.05227 2.22413 2.23707 2.82341 3.37777 3.47591 3.55799 3.60828 3.69867 3.73179 3.79337 3.87044 3.89055 3.90905 4.07306 4.09344 4.12893 4.26155 4.27437 4.47141 4.47685 4.53588 4.56713 4.61474 4.68522 4.74639 4.75828 4.79640 4.83768 4.93434 4.97616 5.00652 5.13682 5.17327 5.36315 5.37684 5.45556 5.55637 5.59219 5.84072 5.95147 6.32398 6.39505 6.53114 6.90152 7.07818 7.17214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.039 4.039 3 Si 0.796 3.204 4 C -0.235 4.235 5 C 0.097 3.903 6 N -0.577 5.577 7 C 0.066 3.934 8 C -0.066 4.066 9 C -0.139 4.139 10 C 0.564 3.436 11 O -0.580 6.580 12 N -0.697 5.697 13 C 0.108 3.892 14 H 0.089 0.911 15 C -0.147 4.147 16 C -0.116 4.116 17 H 0.091 0.909 18 C 0.111 3.889 19 N -0.451 5.451 20 C -0.047 4.047 21 C -0.068 4.068 22 N -0.547 5.547 23 C 0.173 3.827 24 C -0.117 4.117 25 C -0.108 4.108 26 C -0.087 4.087 27 C -0.082 4.082 28 H 0.393 0.607 29 H 0.095 0.905 30 H -0.306 1.306 31 H -0.286 1.286 32 H 0.220 0.780 33 H 0.435 0.565 34 H 0.130 0.870 35 H 0.412 0.588 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.202 0.798 41 H 0.171 0.829 42 H 0.221 0.779 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.149 0.851 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 3.466 -3.181 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.149 4.149 3 Si 0.701 3.299 4 C -0.243 4.243 5 C -0.032 4.032 6 N -0.180 5.180 7 C -0.041 4.041 8 C -0.087 4.087 9 C -0.144 4.144 10 C 0.353 3.647 11 O -0.461 6.461 12 N -0.348 5.348 13 C 0.002 3.998 14 H 0.107 0.893 15 C -0.186 4.186 16 C -0.135 4.135 17 H 0.110 0.890 18 C -0.011 4.011 19 N -0.133 5.133 20 C -0.180 4.180 21 C -0.215 4.215 22 N -0.266 5.266 23 C -0.109 4.109 24 C -0.156 4.156 25 C -0.127 4.127 26 C -0.105 4.105 27 C -0.087 4.087 28 H 0.243 0.757 29 H 0.113 0.887 30 H -0.234 1.234 31 H -0.213 1.213 32 H 0.236 0.764 33 H 0.276 0.724 34 H 0.148 0.852 35 H 0.251 0.749 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.219 0.781 41 H 0.188 0.812 42 H 0.237 0.763 43 H 0.108 0.892 44 H 0.138 0.862 45 H 0.166 0.834 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.417 3.521 -3.049 6.419 hybrid contribution -0.313 -0.414 0.224 0.565 sum -4.730 3.107 -2.825 6.325 Atomic orbital electron populations 1.86463 1.17833 1.82303 1.50289 1.24539 0.84654 1.10206 0.95490 0.94069 0.77047 0.73525 0.85237 1.20861 1.12686 0.91462 0.99261 1.22377 0.97036 0.95811 0.87959 1.41822 1.53979 1.03194 1.18995 1.18116 1.03821 0.86932 0.95200 1.20146 0.99664 0.88822 1.00062 1.19457 1.06357 0.91852 0.96698 1.18354 0.76789 0.85386 0.84145 1.90761 1.46477 1.86794 1.22071 1.45488 1.63149 1.05146 1.21019 1.21941 0.98159 0.80651 0.99011 0.89324 1.23560 0.96664 1.00250 0.98111 1.22919 0.97412 0.95673 0.97518 0.89026 1.22236 0.94020 0.97109 0.87685 1.45753 1.08528 1.51885 1.07129 1.23152 1.01880 1.09899 0.83112 1.22635 0.89368 1.09290 1.00185 1.70243 1.34007 1.21626 1.00753 1.25376 0.82328 1.04769 0.98453 1.23288 0.96712 0.98998 0.96561 1.20859 0.99755 0.97999 0.94125 1.20394 0.99236 0.90807 1.00086 1.19586 1.00885 0.94336 0.93889 0.75685 0.88714 1.23399 1.21286 0.76378 0.72420 0.85249 0.74946 0.87457 0.93020 0.86707 0.86813 0.78140 0.81150 0.76281 0.89236 0.86158 0.83383 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.15 12.88 -148.98 -1.92 -1.77 16 2 C -0.04 0.05 3.06 71.24 0.22 0.27 16 3 Si 0.80 -3.92 30.76 68.60 2.11 -1.81 16 4 C -0.24 0.15 5.57 -18.64 -0.10 0.04 16 5 C 0.10 -0.58 10.43 83.09 0.87 0.29 16 6 N -0.58 2.14 6.07 -187.71 -1.14 1.00 16 7 C 0.07 0.21 7.26 38.96 0.28 0.49 16 8 C -0.07 -0.36 9.61 22.63 0.22 -0.15 16 9 C -0.14 -0.71 5.87 -20.08 -0.12 -0.83 16 10 C 0.56 3.84 7.76 86.71 0.67 4.51 16 11 O -0.58 -8.44 15.91 -3.99 -0.06 -8.50 16 12 N -0.70 0.42 5.21 -443.14 -2.31 -1.89 16 13 C 0.11 -0.29 4.32 45.52 0.20 -0.09 16 14 H 0.09 0.15 7.46 -2.39 -0.02 0.13 16 15 C -0.15 0.64 7.43 31.12 0.23 0.87 16 16 C -0.12 1.00 3.84 -10.27 -0.04 0.96 16 17 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 18 C 0.11 -1.04 5.99 86.38 0.52 -0.52 16 19 N -0.45 0.76 2.75 -529.06 -1.46 -0.69 16 20 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 21 C -0.07 -0.45 11.87 83.52 0.99 0.55 16 22 N -0.55 -5.90 11.25 -200.31 -2.25 -8.15 16 23 C 0.17 0.60 12.56 180.26 2.26 2.87 16 24 C -0.12 1.16 7.39 31.12 0.23 1.39 16 25 C -0.11 -0.13 9.46 22.28 0.21 0.09 16 26 C -0.09 -0.25 10.03 22.20 0.22 -0.03 16 27 C -0.08 -0.32 6.35 -20.14 -0.13 -0.44 16 28 H 0.39 -3.42 8.70 -74.05 -0.64 -4.07 16 29 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 30 H -0.31 -1.14 7.11 99.48 0.71 -0.43 16 31 H -0.29 -0.03 7.11 99.48 0.71 0.68 16 32 H 0.22 -3.29 6.35 -2.91 -0.02 -3.31 16 33 H 0.44 -4.09 8.96 -92.71 -0.83 -4.92 16 34 H 0.13 0.76 7.62 -2.91 -0.02 0.74 16 35 H 0.41 -2.33 6.69 -92.71 -0.62 -2.95 16 36 H 0.11 -0.73 7.90 -2.39 -0.02 -0.75 16 37 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.11 -1.45 8.14 -2.39 -0.02 -1.47 16 39 H 0.11 -1.38 7.84 -2.39 -0.02 -1.40 16 40 H 0.20 -1.35 8.06 -2.91 -0.02 -1.37 16 41 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.22 -0.54 8.06 -2.91 -0.02 -0.56 16 43 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.12 -1.56 8.10 -2.39 -0.02 -1.58 16 45 H 0.15 -0.77 6.36 -2.91 -0.02 -0.79 16 46 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 Total: 0.00 -33.10 388.17 -0.34 -33.44 By element: Atomic # 1 Polarization: -21.84 SS G_CDS: -1.01 Total: -22.85 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.70 Total: 11.22 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -7.16 Total: -9.73 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.98 Total: -10.27 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.11 Total: -1.81 kcal Total: -33.10 -0.34 -33.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.929 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds