Wall clock time and date at job start Sun Mar 7 2021 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47330 * 2 1 4 4 C 1.50700 * 109.46932 * 119.99990 * 2 1 3 5 5 C 1.37946 * 119.92518 * 65.28106 * 4 2 1 6 6 C 1.39603 * 119.87125 * 180.27579 * 5 4 2 7 7 C 1.47844 * 120.13453 * 179.71855 * 6 5 4 8 8 O 1.21552 * 120.00411 * 359.72224 * 7 6 5 9 9 N 1.34782 * 119.99931 * 179.72627 * 7 6 5 10 10 C 1.46499 * 120.00185 * 179.97438 * 9 7 6 11 11 H 1.09007 * 112.84820 * 23.80324 * 10 9 7 12 12 C 1.53779 * 113.61460 * 154.99448 * 10 9 7 13 13 C 1.53788 * 87.07854 * 89.11849 * 12 10 9 14 14 H 1.09003 * 113.61391 * 270.80055 * 13 12 10 15 15 C 1.52994 * 113.61495 * 139.98229 * 13 12 10 16 16 N 1.46499 * 109.47010 * 176.53013 * 15 13 12 17 17 C 1.36887 * 126.39910 * 90.00068 * 16 15 13 18 18 C 1.34672 * 106.81700 * 179.97438 * 17 16 15 19 19 N 1.34127 * 108.01948 * 0.22851 * 18 17 16 20 20 C 1.30502 * 109.25683 * 359.61488 * 19 18 17 21 21 C 1.53780 * 87.17278 * 25.38841 * 13 12 10 22 22 C 1.39539 * 119.72263 * 359.44525 * 6 5 4 23 23 C 1.38076 * 119.84398 * 0.27215 * 22 6 5 24 24 Br 1.89093 * 119.94086 * 179.97438 * 23 22 6 25 25 C 1.38367 * 119.92031 * 244.99592 * 4 2 1 26 26 H 0.96693 * 114.00103 * 60.00087 * 1 2 3 27 27 H 1.09000 * 109.47059 * 239.99484 * 2 1 3 28 28 H 1.48502 * 109.99572 * 298.68070 * 3 2 1 29 29 H 1.48494 * 110.00044 * 59.99747 * 3 2 1 30 30 H 1.07998 * 120.06131 * 359.97438 * 5 4 2 31 31 H 0.96995 * 119.99675 * 359.97438 * 9 7 6 32 32 H 1.09001 * 113.61662 * 334.57186 * 12 10 9 33 33 H 1.08996 * 113.69450 * 203.67528 * 12 10 9 34 34 H 1.08996 * 109.47208 * 56.52707 * 15 13 12 35 35 H 1.08994 * 109.46968 * 296.52833 * 15 13 12 36 36 H 1.07996 * 126.58790 * 0.02562 * 17 16 15 37 37 H 1.08002 * 125.98510 * 179.97438 * 18 17 16 38 38 H 1.08003 * 125.64479 * 180.14464 * 20 19 18 39 39 H 1.09003 * 113.61356 * 89.15927 * 21 13 12 40 40 H 1.08994 * 113.61539 * 220.06071 * 21 13 12 41 41 H 1.08001 * 120.07756 * 180.25613 * 22 6 5 42 42 H 1.08004 * 119.86056 * 0.02954 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6893 -2.0586 1.3937 6 6 2.1501 -2.7144 2.5367 7 6 1.8887 -4.1579 2.7205 8 8 1.2670 -4.7751 1.8779 9 7 2.3396 -4.7894 3.8225 10 6 2.0801 -6.2197 4.0050 11 1 1.9024 -6.7410 3.0643 12 6 3.1037 -6.9205 4.9137 13 6 2.1912 -6.5499 6.0948 14 1 2.4156 -5.5766 6.5313 15 6 2.0661 -7.6568 7.1435 16 7 1.2484 -7.1800 8.2617 17 6 -0.1110 -7.2899 8.3786 18 6 -0.4480 -6.7241 9.5533 19 7 0.6744 -6.2764 10.1354 20 6 1.6950 -6.5505 9.3698 21 6 1.0286 -6.5203 5.0886 22 6 2.8635 -2.0030 3.5022 23 6 3.1041 -0.6551 3.3243 24 35 4.0699 0.3118 4.6313 25 6 2.6393 -0.0100 2.1911 26 1 -0.3933 0.4416 -0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5879 2.4584 -1.2243 29 1 1.5615 2.4678 1.2084 30 1 1.1402 -2.6047 0.6409 31 1 2.8360 -4.2970 4.4948 32 1 4.0747 -6.4259 4.9403 33 1 3.1801 -7.9940 4.7411 34 1 3.0576 -7.9262 7.5074 35 1 1.5939 -8.5307 6.6948 36 1 -0.7838 -7.7438 7.6661 37 1 -1.4475 -6.6414 9.9543 38 1 2.7257 -6.3099 9.5849 39 1 0.5354 -7.4842 4.9629 40 1 0.3269 -5.7033 5.2560 41 1 3.2262 -2.5055 4.3867 42 1 2.8296 1.0445 2.0565 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:02 Heat of formation + Delta-G solvation = 66.095748 kcal Electronic energy + Delta-G solvation = -26999.403546 eV Core-core repulsion = 22994.728996 eV Total energy + Delta-G solvation = -4004.674550 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.052 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.93729 -41.77509 -40.57031 -39.31103 -37.82892 -35.49446 -34.23900 -33.70654 -32.80745 -30.51319 -30.40850 -28.83731 -27.05880 -26.74245 -25.73350 -23.91763 -22.73619 -22.24575 -21.81124 -21.68403 -20.38298 -19.00397 -18.66454 -18.30934 -17.73714 -17.42474 -16.74759 -16.52471 -16.26994 -16.12341 -15.84328 -15.42697 -15.17777 -14.96776 -14.87818 -14.85140 -14.60842 -14.34662 -14.16487 -14.05977 -13.75042 -13.67813 -13.45180 -12.87202 -12.77684 -12.43958 -12.35357 -12.03588 -11.87926 -11.72855 -11.53034 -11.35814 -11.22874 -10.90174 -10.62660 -10.48023 -10.38177 -10.12586 -9.93720 -9.43497 -4.99926 -0.55996 -0.19530 0.38913 1.17346 1.18065 1.45842 1.54026 1.85723 1.91207 1.94896 2.24507 2.39916 3.12422 3.31651 3.39143 3.47513 3.55927 3.69265 3.75580 3.77946 3.83838 3.90658 3.94821 4.05064 4.11727 4.18481 4.24949 4.27487 4.46398 4.52774 4.59625 4.67024 4.72299 4.75756 4.79791 4.81611 4.88662 4.96959 4.99996 5.05792 5.12464 5.32610 5.36765 5.50875 5.83492 6.29594 6.34750 6.51203 6.97834 7.17901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.087 4.087 3 Si 0.758 3.242 4 C -0.078 4.078 5 C -0.029 4.029 6 C -0.137 4.137 7 C 0.564 3.436 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.108 3.892 11 H 0.090 0.910 12 C -0.116 4.116 13 C -0.117 4.117 14 H 0.094 0.906 15 C 0.110 3.890 16 N -0.451 5.451 17 C -0.046 4.046 18 C -0.068 4.068 19 N -0.546 5.546 20 C 0.175 3.825 21 C -0.147 4.147 22 C -0.044 4.044 23 C -0.100 4.100 24 Br -0.027 7.027 25 C -0.064 4.064 26 H 0.399 0.601 27 H 0.103 0.897 28 H -0.279 1.279 29 H -0.291 1.291 30 H 0.134 0.866 31 H 0.413 0.587 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.193 0.807 37 H 0.168 0.832 38 H 0.230 0.770 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.162 0.838 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -1.606 -3.188 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.196 4.196 3 Si 0.662 3.338 4 C -0.079 4.079 5 C -0.049 4.049 6 C -0.142 4.142 7 C 0.352 3.648 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.003 3.997 11 H 0.109 0.891 12 C -0.154 4.154 13 C -0.137 4.137 14 H 0.112 0.888 15 C -0.011 4.011 16 N -0.133 5.133 17 C -0.180 4.180 18 C -0.215 4.215 19 N -0.265 5.265 20 C -0.108 4.108 21 C -0.186 4.186 22 C -0.065 4.065 23 C -0.179 4.179 24 Br 0.059 6.941 25 C -0.083 4.083 26 H 0.250 0.750 27 H 0.121 0.879 28 H -0.205 1.205 29 H -0.218 1.218 30 H 0.152 0.848 31 H 0.251 0.749 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.210 0.790 37 H 0.186 0.814 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.180 0.820 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.831 -0.843 -2.095 7.194 hybrid contribution -1.730 -0.311 -1.203 2.130 sum 5.100 -1.154 -3.297 6.182 Atomic orbital electron populations 1.86544 1.18120 1.80821 1.51292 1.25028 0.84473 1.12095 0.97954 0.94244 0.90221 0.71957 0.77345 1.19354 0.98885 0.93352 0.96304 1.21283 0.93873 0.93752 0.95972 1.19875 1.03701 0.93349 0.97227 1.18273 0.78291 0.86654 0.81609 1.90794 1.41867 1.67966 1.44342 1.45492 1.56651 1.10371 1.22090 1.21999 0.98047 0.80493 0.99162 0.89145 1.23282 0.97520 1.02882 0.91751 1.22949 0.97326 0.99388 0.93997 0.88765 1.22229 0.96865 0.97262 0.84727 1.45742 1.06958 1.43219 1.17403 1.23041 0.85072 1.08371 1.01557 1.22585 0.98197 1.05192 0.95499 1.70239 0.99688 1.24246 1.32342 1.25526 1.00887 0.99540 0.84817 1.23562 0.96663 1.02791 0.95537 1.21438 0.94478 0.92161 0.98387 1.21710 1.04273 0.95318 0.96606 1.96851 1.72128 1.73606 1.51521 1.21375 0.94965 1.00597 0.91393 0.75023 0.87896 1.20513 1.21809 0.84831 0.74900 0.88855 0.86214 0.86234 0.87335 0.78970 0.81445 0.75431 0.87827 0.93003 0.82032 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.98 12.81 -148.98 -1.91 -2.89 16 2 C -0.09 0.14 2.79 71.24 0.20 0.33 16 3 Si 0.76 -2.54 29.84 68.60 2.05 -0.49 16 4 C -0.08 -0.10 5.38 -19.90 -0.11 -0.21 16 5 C -0.03 -0.11 9.23 22.53 0.21 0.09 16 6 C -0.14 -0.29 5.87 -20.09 -0.12 -0.41 16 7 C 0.56 2.37 7.77 86.79 0.67 3.04 16 8 O -0.57 -7.12 15.95 -3.88 -0.06 -7.18 16 9 N -0.69 2.18 5.21 -442.62 -2.31 -0.12 16 10 C 0.11 -0.50 4.33 45.58 0.20 -0.30 16 11 H 0.09 -0.02 7.46 -2.38 -0.02 -0.04 16 12 C -0.12 1.37 7.39 31.12 0.23 1.60 16 13 C -0.12 1.19 3.83 -10.27 -0.04 1.15 16 14 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 15 C 0.11 -1.15 5.97 86.38 0.52 -0.64 16 16 N -0.45 1.17 2.75 -529.08 -1.46 -0.29 16 17 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 18 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 19 N -0.55 -5.26 11.25 -200.31 -2.25 -7.51 16 20 C 0.17 0.27 12.56 180.26 2.26 2.53 16 21 C -0.15 0.82 7.44 31.18 0.23 1.05 16 22 C -0.04 0.09 9.28 22.55 0.21 0.30 16 23 C -0.10 0.08 6.22 22.28 0.14 0.22 16 24 Br -0.03 0.04 33.69 -20.37 -0.69 -0.65 16 25 C -0.06 0.02 8.40 22.35 0.19 0.20 16 26 H 0.40 -2.56 8.74 -74.06 -0.65 -3.21 16 27 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 28 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 29 H -0.29 -0.99 7.04 99.48 0.70 -0.29 16 30 H 0.13 0.81 7.65 -2.91 -0.02 0.79 16 31 H 0.41 -3.51 6.74 -92.71 -0.62 -4.14 16 32 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 33 H 0.12 -1.73 8.10 -2.39 -0.02 -1.75 16 34 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 35 H 0.11 -1.35 7.87 -2.39 -0.02 -1.37 16 36 H 0.19 -0.92 8.06 -2.91 -0.02 -0.94 16 37 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.23 -1.34 8.06 -2.91 -0.02 -1.37 16 39 H 0.10 -0.76 7.92 -2.39 -0.02 -0.78 16 40 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.16 -1.30 6.40 -2.91 -0.02 -1.32 16 42 H 0.15 -0.44 4.85 -2.91 -0.01 -0.46 16 Total: 0.00 -26.75 376.02 -0.04 -26.79 By element: Atomic # 1 Polarization: -17.93 SS G_CDS: -0.16 Total: -18.09 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.75 Total: 10.44 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -6.02 Total: -7.93 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -1.97 Total: -10.07 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.05 Total: -0.49 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.69 Total: -0.65 kcal Total: -26.75 -0.04 -26.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.882 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds