Wall clock time and date at job start Sun Mar 7 2021 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46914 * 2 1 4 4 C 1.53000 * 109.47533 * 65.21182 * 3 2 1 5 5 C 1.53002 * 109.47396 * 185.21234 * 3 2 1 6 6 C 1.50694 * 109.47543 * 181.79002 * 5 3 2 7 7 O 1.21283 * 119.99625 * 94.33555 * 6 5 3 8 8 N 1.34780 * 120.00250 * 274.33718 * 6 5 3 9 9 C 1.46501 * 119.99907 * 175.51947 * 8 6 5 10 10 H 1.08998 * 112.84957 * 23.80815 * 9 8 6 11 11 C 1.53779 * 113.61046 * 154.99702 * 9 8 6 12 12 C 1.53780 * 87.07981 * 89.11794 * 11 9 8 13 13 H 1.08998 * 113.62046 * 270.88132 * 12 11 9 14 14 C 1.53000 * 113.61599 * 140.06004 * 12 11 9 15 15 N 1.46499 * 109.47354 * 174.99892 * 14 12 11 16 16 C 1.36884 * 126.39920 * 269.72151 * 15 14 12 17 17 C 1.34673 * 106.81622 * 179.84314 * 16 15 14 18 18 N 1.34133 * 108.01984 * 0.41659 * 17 16 15 19 19 C 1.30500 * 109.25491 * 359.73378 * 18 17 16 20 20 C 1.53774 * 113.61483 * 252.49735 * 9 8 6 21 21 N 1.46496 * 109.46687 * 301.79611 * 5 3 2 22 22 C 1.36342 * 125.63680 * 294.31465 * 21 5 3 23 23 C 1.34847 * 108.21798 * 180.02562 * 22 21 5 24 24 C 1.40887 * 107.42107 * 0.02562 * 23 22 21 25 25 C 1.34856 * 107.41535 * 359.73617 * 24 23 22 26 26 C 1.50696 * 125.89218 * 180.25348 * 25 24 23 27 27 O 1.42901 * 109.47254 * 150.19759 * 26 25 24 28 28 Si 1.86302 * 109.47183 * 30.19925 * 26 25 24 29 29 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46905 * 300.00027 * 1 2 3 31 31 H 1.08997 * 109.47117 * 59.99827 * 1 2 3 32 32 H 1.08995 * 109.46718 * 239.99965 * 2 1 3 33 33 H 1.08999 * 109.46728 * 119.99809 * 2 1 3 34 34 H 1.09006 * 109.47280 * 305.21820 * 3 2 1 35 35 H 1.09008 * 109.46978 * 53.65036 * 4 3 2 36 36 H 1.08999 * 109.47822 * 173.65137 * 4 3 2 37 37 H 1.09003 * 109.47320 * 293.66046 * 4 3 2 38 38 H 1.09005 * 109.46322 * 61.79158 * 5 3 2 39 39 H 0.97001 * 119.99963 * 355.79538 * 8 6 5 40 40 H 1.09000 * 113.61419 * 203.66608 * 11 9 8 41 41 H 1.08999 * 113.62117 * 334.48809 * 11 9 8 42 42 H 1.09001 * 109.47556 * 295.00475 * 14 12 11 43 43 H 1.09005 * 109.47275 * 55.00461 * 14 12 11 44 44 H 1.07999 * 126.58988 * 359.97438 * 16 15 14 45 45 H 1.08002 * 125.98706 * 180.18648 * 17 16 15 46 46 H 1.08001 * 125.64550 * 180.02562 * 19 18 17 47 47 H 1.09004 * 113.61851 * 25.43224 * 20 9 8 48 48 H 1.09006 * 113.61436 * 156.33931 * 20 9 8 49 49 H 1.08002 * 125.88901 * 359.97438 * 22 21 5 50 50 H 1.08003 * 126.28719 * 180.02562 * 23 22 21 51 51 H 1.07994 * 126.29213 * 179.97438 * 24 23 22 52 52 H 1.08996 * 109.47062 * 270.19886 * 26 25 24 53 53 H 0.96699 * 113.99743 * 179.97438 * 27 26 25 54 54 H 1.48508 * 109.99896 * 298.67927 * 28 26 25 55 55 H 1.48496 * 110.00070 * 59.99833 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6398 2.1250 1.3096 5 6 3.5644 1.4446 -0.1310 6 6 4.0705 2.8633 -0.0869 7 8 4.4382 3.3434 0.9644 8 7 4.1144 3.5986 -1.2156 9 6 4.5130 5.0072 -1.1571 10 1 5.1250 5.2380 -0.2852 11 6 5.0967 5.5374 -2.4773 12 6 3.6575 5.9060 -2.8744 13 1 3.1270 5.1038 -3.3873 14 6 3.5463 7.2494 -3.5980 15 7 2.1640 7.4542 -4.0379 16 6 1.6298 7.0765 -5.2403 17 6 0.3366 7.4520 -5.2273 18 7 0.0902 8.0511 -4.0527 19 6 1.1802 8.0560 -3.3352 20 6 3.3469 5.9867 -1.3704 21 7 4.1505 0.6823 0.9742 22 6 4.0973 1.0261 2.2925 23 6 4.7477 0.0811 3.0012 24 6 5.2202 -0.8812 2.0870 25 6 4.8355 -0.4905 0.8549 26 6 5.1173 -1.2221 -0.4320 27 8 4.0654 -0.9671 -1.3651 28 14 5.2198 -3.0518 -0.0966 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6023 1.9826 -0.8396 35 1 1.9816 1.5235 2.1520 36 1 2.0975 3.1130 1.3592 37 1 0.5551 2.2245 1.3508 38 1 3.8481 0.9869 -1.0788 39 1 3.8783 3.1963 -2.0660 40 1 5.7494 6.4011 -2.3504 41 1 5.5384 4.7614 -3.1024 42 1 3.8345 8.0525 -2.9196 43 1 4.2073 7.2512 -4.4647 44 1 2.1458 6.5722 -6.0440 45 1 -0.3762 7.3009 -6.0245 46 1 1.2791 8.4720 -2.3434 47 1 2.3746 5.5731 -1.1025 48 1 3.5212 6.9733 -0.9409 49 1 3.6177 1.9043 2.6989 50 1 4.8817 0.0648 4.0727 51 1 5.7834 -1.7703 2.3289 52 1 6.0634 -0.8753 -0.8475 53 1 4.1813 -1.4073 -2.2183 54 1 6.3307 -3.3336 0.8479 55 1 3.9359 -3.5370 0.4701 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:06 Heat of formation + Delta-G solvation = 83.576572 kcal Electronic energy + Delta-G solvation = -35997.330767 eV Core-core repulsion = 31618.344379 eV Total energy + Delta-G solvation = -4378.986387 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.98458 -42.89568 -41.22810 -39.63826 -37.72617 -37.56134 -35.42462 -33.99691 -33.31241 -31.40752 -30.54705 -30.36418 -29.09914 -27.99349 -26.74330 -25.93911 -25.36164 -24.09756 -22.37981 -22.20446 -21.81131 -21.72359 -21.56003 -20.44244 -20.02775 -18.70992 -18.26333 -18.17115 -17.70559 -17.16525 -16.74103 -16.48647 -16.28011 -15.95788 -15.76848 -15.35566 -15.29658 -15.18113 -15.10651 -14.79771 -14.73937 -14.66330 -14.39123 -14.21600 -14.19328 -13.88806 -13.64774 -13.44133 -13.40071 -13.27754 -13.09695 -13.05450 -12.78890 -12.73956 -12.44988 -12.34874 -12.11299 -12.01257 -11.83477 -11.74391 -11.53857 -11.37218 -11.02555 -10.88677 -10.50273 -10.47014 -10.17723 -9.68812 -9.42351 -8.98308 -4.95742 0.96185 1.17738 1.19866 1.38429 1.70588 1.75143 1.89451 1.94046 2.14418 2.20109 2.25170 3.19123 3.32592 3.37690 3.46715 3.54674 3.68163 3.71254 3.76814 3.78109 3.90102 3.95891 4.08585 4.10418 4.13431 4.22961 4.26218 4.33699 4.40336 4.46080 4.50333 4.51001 4.54290 4.59130 4.63058 4.63942 4.67546 4.73761 4.79217 4.81220 4.85569 4.94881 4.96328 4.99364 5.02100 5.11906 5.13958 5.18652 5.22522 5.28650 5.37125 5.42935 5.50214 5.85701 5.87244 6.12818 6.20617 6.33113 6.39151 6.89813 7.00336 7.18765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.164 4.164 5 C 0.121 3.879 6 C 0.508 3.492 7 O -0.560 6.560 8 N -0.693 5.693 9 C 0.110 3.890 10 H 0.082 0.918 11 C -0.118 4.118 12 C -0.113 4.113 13 H 0.097 0.903 14 C 0.110 3.890 15 N -0.451 5.451 16 C -0.045 4.045 17 C -0.067 4.067 18 N -0.547 5.547 19 C 0.173 3.827 20 C -0.146 4.146 21 N -0.409 5.409 22 C 0.016 3.984 23 C -0.229 4.229 24 C -0.229 4.229 25 C 0.022 3.978 26 C -0.042 4.042 27 O -0.554 6.554 28 Si 0.805 3.195 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.163 0.837 39 H 0.417 0.583 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.203 0.797 45 H 0.171 0.829 46 H 0.219 0.781 47 H 0.056 0.944 48 H 0.102 0.898 49 H 0.162 0.838 50 H 0.139 0.861 51 H 0.132 0.868 52 H 0.099 0.901 53 H 0.410 0.590 54 H -0.301 1.301 55 H -0.310 1.310 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -1.899 -10.129 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.100 4.100 4 C -0.221 4.221 5 C 0.015 3.985 6 C 0.294 3.706 7 O -0.437 6.437 8 N -0.345 5.345 9 C 0.004 3.996 10 H 0.100 0.900 11 C -0.156 4.156 12 C -0.132 4.132 13 H 0.115 0.885 14 C -0.011 4.011 15 N -0.133 5.133 16 C -0.179 4.179 17 C -0.214 4.214 18 N -0.266 5.266 19 C -0.110 4.110 20 C -0.185 4.185 21 N -0.085 5.085 22 C -0.115 4.115 23 C -0.253 4.253 24 C -0.254 4.254 25 C -0.089 4.089 26 C -0.151 4.151 27 O -0.366 6.366 28 Si 0.712 3.288 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.180 0.820 39 H 0.254 0.746 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.220 0.780 45 H 0.188 0.812 46 H 0.235 0.765 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.180 0.820 50 H 0.156 0.844 51 H 0.150 0.850 52 H 0.116 0.884 53 H 0.264 0.736 54 H -0.230 1.230 55 H -0.238 1.238 Dipole moment (debyes) X Y Z Total from point charges 3.804 -1.306 -8.327 9.247 hybrid contribution 0.405 0.127 0.657 0.782 sum 4.209 -1.179 -7.670 8.828 Atomic orbital electron populations 1.21806 0.95222 1.01845 1.02034 1.21458 0.95880 0.94309 1.02662 1.21376 0.90290 0.98608 0.99699 1.22206 1.02165 0.99941 0.97769 1.21824 0.95213 0.88815 0.92628 1.20885 0.77291 0.88277 0.84175 1.90748 1.48408 1.73145 1.31437 1.45474 1.68351 1.10985 1.09657 1.21889 0.97326 0.80026 1.00338 0.89967 1.23270 0.95528 1.02524 0.94306 1.22905 0.98083 0.97181 0.94992 0.88480 1.22223 0.78532 0.98448 1.01942 1.45741 1.11534 1.42692 1.13305 1.23160 0.95719 1.07627 0.91369 1.22639 0.96497 1.05065 0.97233 1.70246 1.28203 1.21915 1.06229 1.25333 0.83458 1.01696 1.00478 1.23542 0.98321 1.00442 0.96182 1.43615 1.41716 1.17461 1.05688 1.21963 1.05252 1.01189 0.83061 1.21036 1.06830 0.97692 0.99720 1.20706 1.09651 1.02588 0.92450 1.20317 1.02996 0.89576 0.96036 1.24361 0.93641 1.09878 0.87231 1.86284 1.45612 1.75669 1.29031 0.95001 0.75643 0.72360 0.85844 0.92747 0.93411 0.91466 0.88955 0.94728 0.87460 0.92607 0.93444 0.91297 0.82020 0.74607 0.86723 0.89031 0.87198 0.86741 0.78034 0.81152 0.76494 0.92544 0.87998 0.82029 0.84353 0.84980 0.88358 0.73607 1.22962 1.23794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 9.67 71.98 0.70 0.74 16 2 C -0.11 -0.06 4.90 30.59 0.15 0.09 16 3 C -0.08 0.06 2.28 -10.79 -0.02 0.03 16 4 C -0.16 -0.57 7.39 71.98 0.53 -0.04 16 5 C 0.12 0.02 2.24 44.24 0.10 0.12 16 6 C 0.51 1.14 5.98 87.65 0.52 1.67 16 7 O -0.56 -6.20 13.39 -3.04 -0.04 -6.24 16 8 N -0.69 3.62 5.26 -440.05 -2.31 1.31 16 9 C 0.11 -0.61 4.35 45.51 0.20 -0.41 16 10 H 0.08 0.02 7.42 -2.39 -0.02 0.00 16 11 C -0.12 1.44 7.39 31.12 0.23 1.67 16 12 C -0.11 1.29 3.83 -10.27 -0.04 1.25 16 13 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 14 C 0.11 -1.24 5.99 86.38 0.52 -0.72 16 15 N -0.45 1.70 2.75 -529.05 -1.46 0.24 16 16 C -0.05 0.09 11.58 83.09 0.96 1.06 16 17 C -0.07 -0.30 11.87 83.52 0.99 0.69 16 18 N -0.55 -4.89 11.25 -200.30 -2.25 -7.14 16 19 C 0.17 0.29 12.56 180.26 2.26 2.55 16 20 C -0.15 1.04 7.43 31.12 0.23 1.27 16 21 N -0.41 -2.61 1.85 -491.52 -0.91 -3.52 16 22 C 0.02 0.17 7.56 83.21 0.63 0.80 16 23 C -0.23 -2.72 10.86 22.14 0.24 -2.48 16 24 C -0.23 -2.42 9.43 22.14 0.21 -2.21 16 25 C 0.02 0.14 6.19 41.08 0.25 0.40 16 26 C -0.04 0.14 2.93 71.23 0.21 0.35 16 27 O -0.55 4.82 7.90 -148.98 -1.18 3.64 16 28 Si 0.81 -2.11 31.26 68.60 2.14 0.04 16 29 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.05 0.06 6.72 -2.38 -0.02 0.05 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.09 -0.16 6.33 -2.39 -0.02 -0.18 16 33 H 0.03 0.24 7.73 -2.39 -0.02 0.22 16 34 H 0.11 -0.49 8.14 -2.38 -0.02 -0.51 16 35 H 0.06 0.39 5.23 -2.38 -0.01 0.37 16 36 H 0.05 0.29 6.39 -2.39 -0.02 0.28 16 37 H 0.07 0.15 6.89 -2.39 -0.02 0.13 16 38 H 0.16 -0.77 5.42 -2.38 -0.01 -0.78 16 39 H 0.42 -4.66 8.70 -92.71 -0.81 -5.47 16 40 H 0.11 -1.62 8.10 -2.39 -0.02 -1.64 16 41 H 0.09 -1.24 8.14 -2.39 -0.02 -1.26 16 42 H 0.11 -1.46 7.85 -2.39 -0.02 -1.48 16 43 H 0.11 -1.65 8.14 -2.38 -0.02 -1.67 16 44 H 0.20 -1.84 8.06 -2.91 -0.02 -1.86 16 45 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 46 H 0.22 -0.84 8.06 -2.91 -0.02 -0.87 16 47 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 48 H 0.10 -0.85 7.90 -2.38 -0.02 -0.87 16 49 H 0.16 1.83 5.82 -2.91 -0.02 1.81 16 50 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 51 H 0.13 1.28 6.75 -2.91 -0.02 1.26 16 52 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 53 H 0.41 -8.03 8.74 -74.06 -0.65 -8.68 16 54 H -0.30 -1.43 6.89 99.48 0.69 -0.75 16 55 H -0.31 -2.15 7.11 99.48 0.71 -1.44 16 Total: 0.00 -31.05 425.28 2.34 -28.71 By element: Atomic # 1 Polarization: -23.34 SS G_CDS: -0.53 Total: -23.87 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 8.87 Total: 6.82 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -6.93 Total: -9.11 kcal Atomic # 8 Polarization: -1.38 SS G_CDS: -1.22 Total: -2.60 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.14 Total: 0.04 kcal Total: -31.05 2.34 -28.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.289 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds