Wall clock time and date at job start Sun Mar 7 2021 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86301 * 109.47202 * 2 1 4 4 C 1.50696 * 109.47121 * 119.99904 * 2 1 3 5 5 C 1.38412 * 119.82556 * 64.99952 * 4 2 1 6 6 C 1.37889 * 120.17239 * 180.02562 * 5 4 2 7 7 C 1.39836 * 119.82229 * 359.97438 * 6 5 4 8 8 C 1.47217 * 120.16806 * 179.97438 * 7 6 5 9 9 C 1.34804 * 120.00168 * 180.02562 * 8 7 6 10 10 C 1.46425 * 119.99969 * 180.02562 * 9 8 7 11 11 O 1.21690 * 120.00060 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99711 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99552 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.91182 * 336.24587 * 13 12 10 15 15 C 1.53778 * 113.61560 * 107.49938 * 13 12 10 16 16 C 1.53778 * 87.08449 * 89.11214 * 15 13 12 17 17 H 1.08998 * 113.61879 * 270.88747 * 16 15 13 18 18 C 1.53001 * 113.69389 * 139.99094 * 16 15 13 19 19 N 1.46498 * 109.46735 * 87.46692 * 18 16 15 20 20 C 1.36884 * 126.39961 * 269.70969 * 19 18 16 21 21 C 1.34671 * 106.81823 * 179.84786 * 20 19 18 22 22 N 1.34120 * 108.01649 * 0.42471 * 21 20 19 23 23 C 1.30495 * 109.26274 * 359.73141 * 22 21 20 24 24 C 1.53784 * 113.61123 * 204.99529 * 13 12 10 25 25 C 1.39832 * 119.66511 * 0.25046 * 7 6 5 26 26 C 1.37895 * 119.82234 * 359.48989 * 25 7 6 27 27 H 0.96700 * 113.99724 * 299.99700 * 1 2 3 28 28 H 1.08992 * 109.46759 * 240.00094 * 2 1 3 29 29 H 1.48501 * 110.00364 * 300.00253 * 3 2 1 30 30 H 1.48502 * 109.99834 * 61.32257 * 3 2 1 31 31 H 1.08004 * 119.91431 * 0.02562 * 5 4 2 32 32 H 1.08000 * 120.08813 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.99814 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.00018 * 359.97438 * 9 8 7 35 35 H 0.96998 * 120.00189 * 359.97438 * 12 10 9 36 36 H 1.08999 * 113.61526 * 334.56550 * 15 13 12 37 37 H 1.09004 * 113.61886 * 203.66560 * 15 13 12 38 38 H 1.08997 * 109.47307 * 207.46880 * 18 16 15 39 39 H 1.09003 * 109.47172 * 327.46784 * 18 16 15 40 40 H 1.08006 * 126.58585 * 359.97438 * 20 19 18 41 41 H 1.07998 * 125.98527 * 180.12559 * 21 20 19 42 42 H 1.08000 * 125.65087 * 179.97438 * 23 22 21 43 43 H 1.09004 * 113.61451 * 156.33708 * 24 13 12 44 44 H 1.08994 * 113.61477 * 25.43010 * 24 13 12 45 45 H 1.08002 * 120.09041 * 179.72708 * 25 7 6 46 46 H 1.08000 * 119.91085 * 180.25563 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6824 -2.0619 1.3949 6 6 2.1382 -2.7189 2.5182 7 6 2.8542 -2.0162 3.4924 8 6 3.3439 -2.7099 4.6949 9 6 4.0333 -2.0291 5.6321 10 6 4.5209 -2.7192 6.8279 11 8 4.3034 -3.9073 6.9759 12 7 5.2097 -2.0383 7.7652 13 6 5.6971 -2.7288 8.9619 14 1 5.1267 -3.6278 9.1949 15 6 7.2195 -2.9455 8.9710 16 6 7.3320 -1.5717 9.6528 17 1 7.4163 -0.7417 8.9513 18 6 8.3836 -1.5206 10.7629 19 7 9.6871 -1.1837 10.1855 20 6 10.6226 -2.0683 9.7205 21 6 11.6631 -1.3375 9.2766 22 7 11.3748 -0.0426 9.4740 23 6 10.1929 0.0572 10.0181 24 6 5.9014 -1.7986 10.1694 25 6 3.0976 -0.6499 3.3212 26 6 2.6398 -0.0082 2.1898 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8899 29 1 1.5616 2.4680 -1.2084 30 1 1.5880 2.4585 1.2243 31 1 1.1296 -2.6034 0.6414 32 1 1.9435 -3.7737 2.6450 33 1 3.1501 -3.7642 4.8267 34 1 4.2267 -0.9747 5.5006 35 1 5.3828 -1.0912 7.6474 36 1 7.6621 -2.9764 7.9754 37 1 7.5388 -3.7742 9.6031 38 1 8.1033 -0.7625 11.4943 39 1 8.4431 -2.4929 11.2521 40 1 10.5409 -3.1452 9.7097 41 1 12.5724 -1.7264 8.8426 42 1 9.7009 0.9794 10.2899 43 1 5.8603 -2.3137 11.1292 44 1 5.2799 -0.9037 10.1412 45 1 3.6460 -0.0994 4.0714 46 1 2.8306 1.0461 2.0542 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12360594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:10 Heat of formation + Delta-G solvation = 73.524184 kcal Electronic energy + Delta-G solvation = -27209.310290 eV Core-core repulsion = 23261.012104 eV Total energy + Delta-G solvation = -3948.298186 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92443 -41.33154 -40.62687 -39.51911 -37.91469 -35.36904 -35.11330 -33.82819 -32.21452 -31.28546 -30.39434 -28.85835 -27.17141 -26.71873 -24.80029 -24.05570 -23.54297 -22.24975 -22.12800 -21.78511 -20.58010 -20.21017 -18.96796 -18.41092 -18.10259 -17.29502 -16.93364 -16.66049 -16.42204 -16.21775 -16.07090 -15.89790 -15.59258 -15.20810 -15.03267 -14.92053 -14.83130 -14.57693 -14.50828 -14.18235 -14.13374 -13.85252 -13.72698 -13.44485 -13.29143 -13.07810 -12.74712 -12.34398 -12.28424 -12.10023 -11.69952 -11.60995 -11.37752 -11.34087 -11.13191 -10.89314 -10.62672 -10.45094 -10.13152 -9.99765 -9.42327 -9.27713 -4.92744 -0.58062 0.37862 0.85663 1.18538 1.29469 1.58166 1.95232 1.95444 2.11187 2.18863 2.25768 2.78587 3.38792 3.40128 3.49557 3.52308 3.66102 3.72333 3.78272 3.81624 3.91903 3.92559 4.06426 4.14278 4.17883 4.19533 4.28509 4.34128 4.43119 4.53323 4.56867 4.61291 4.70498 4.76077 4.81269 4.82399 4.84168 4.95341 4.98842 5.01888 5.07194 5.14269 5.17322 5.35980 5.38412 5.46144 5.57241 5.58550 5.84808 5.88290 6.35541 6.45700 6.48970 7.17303 7.19023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.088 4.088 3 Si 0.770 3.230 4 C -0.108 4.108 5 C -0.106 4.106 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.019 4.019 9 C -0.210 4.210 10 C 0.544 3.456 11 O -0.591 6.591 12 N -0.696 5.696 13 C 0.107 3.893 14 H 0.083 0.917 15 C -0.146 4.146 16 C -0.114 4.114 17 H 0.096 0.904 18 C 0.110 3.890 19 N -0.452 5.452 20 C -0.047 4.047 21 C -0.067 4.067 22 N -0.545 5.545 23 C 0.175 3.825 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.123 4.123 27 H 0.386 0.614 28 H 0.124 0.876 29 H -0.307 1.307 30 H -0.277 1.277 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.417 0.583 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.193 0.807 41 H 0.169 0.831 42 H 0.230 0.770 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.156 0.844 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 2.860 3.455 4.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.196 4.196 3 Si 0.675 3.325 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.039 4.039 9 C -0.231 4.231 10 C 0.334 3.666 11 O -0.474 6.474 12 N -0.347 5.347 13 C 0.002 3.998 14 H 0.101 0.899 15 C -0.185 4.185 16 C -0.133 4.133 17 H 0.114 0.886 18 C -0.011 4.011 19 N -0.133 5.133 20 C -0.181 4.181 21 C -0.214 4.214 22 N -0.264 5.264 23 C -0.108 4.108 24 C -0.156 4.156 25 C -0.113 4.113 26 C -0.141 4.141 27 H 0.236 0.764 28 H 0.142 0.858 29 H -0.235 1.235 30 H -0.203 1.203 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.180 0.820 35 H 0.254 0.746 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.210 0.790 41 H 0.187 0.813 42 H 0.246 0.754 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.174 0.826 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.813 3.170 2.915 4.382 hybrid contribution -1.451 -0.809 0.292 1.687 sum -2.264 2.360 3.208 4.581 Atomic orbital electron populations 1.86587 1.18515 1.80423 1.50186 1.25309 0.83464 1.12129 0.98724 0.94018 0.90247 0.71803 0.76431 1.20534 0.98755 0.94803 0.96794 1.21098 0.99268 0.94188 0.97895 1.21619 0.96439 1.00709 0.93294 1.19119 1.00119 0.94269 0.94628 1.22375 0.91217 0.99555 0.90781 1.23001 1.03704 1.02127 0.94244 1.18744 0.77403 0.86315 0.84090 1.90815 1.59668 1.17480 1.79396 1.45462 1.55261 1.13635 1.20310 1.21885 0.95033 0.97088 0.85829 0.89874 1.23521 0.95684 0.98077 1.01205 1.22918 0.94754 0.98128 0.97533 0.88604 1.22225 0.78102 1.04986 0.95795 1.45742 1.15538 1.06622 1.45448 1.23049 0.91228 0.97801 1.06047 1.22590 1.01434 0.89363 1.07977 1.70235 1.15289 1.21583 1.19333 1.25529 0.92128 0.90336 1.02793 1.23278 0.94468 1.00206 0.97668 1.21644 0.98531 0.93178 0.97909 1.21214 0.98361 1.00651 0.93846 0.76446 0.85846 1.23543 1.20309 0.85213 0.84558 0.85981 0.81966 0.74607 0.92837 0.88155 0.86318 0.87496 0.79011 0.81343 0.75419 0.86642 0.89018 0.82623 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.96 12.83 -148.98 -1.91 -2.88 16 2 C -0.09 0.16 2.80 71.23 0.20 0.36 16 3 Si 0.77 -2.74 29.87 68.60 2.05 -0.69 16 4 C -0.11 0.16 5.36 -19.79 -0.11 0.06 16 5 C -0.11 0.00 9.66 22.23 0.21 0.21 16 6 C -0.10 0.00 9.80 22.57 0.22 0.23 16 7 C -0.08 0.06 5.87 -20.15 -0.12 -0.06 16 8 C -0.02 -0.01 9.46 23.84 0.23 0.22 16 9 C -0.21 0.44 9.41 23.61 0.22 0.66 16 10 C 0.54 1.58 7.74 86.37 0.67 2.25 16 11 O -0.59 -7.37 15.83 -4.32 -0.07 -7.44 16 12 N -0.70 2.68 5.26 -444.26 -2.34 0.35 16 13 C 0.11 -0.46 4.32 45.52 0.20 -0.26 16 14 H 0.08 0.09 7.46 -2.39 -0.02 0.07 16 15 C -0.15 0.82 7.43 31.12 0.23 1.05 16 16 C -0.11 1.16 3.84 -10.27 -0.04 1.12 16 17 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 18 C 0.11 -1.15 5.99 86.38 0.52 -0.63 16 19 N -0.45 1.32 2.75 -529.06 -1.46 -0.13 16 20 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 21 C -0.07 -0.39 11.87 83.53 0.99 0.60 16 22 N -0.55 -4.85 11.25 -200.32 -2.25 -7.11 16 23 C 0.17 0.17 12.56 180.26 2.26 2.43 16 24 C -0.12 1.32 7.39 31.12 0.23 1.55 16 25 C -0.10 0.38 9.41 22.57 0.21 0.59 16 26 C -0.12 0.47 8.65 22.23 0.19 0.67 16 27 H 0.39 -1.52 8.70 -74.06 -0.64 -2.17 16 28 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H -0.31 -1.52 7.11 99.48 0.71 -0.81 16 30 H -0.28 0.22 7.00 99.48 0.70 0.91 16 31 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 33 H 0.12 0.39 7.52 -2.91 -0.02 0.37 16 34 H 0.16 -1.52 6.07 -2.91 -0.02 -1.54 16 35 H 0.42 -4.16 8.68 -92.71 -0.80 -4.96 16 36 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.10 -0.70 7.90 -2.38 -0.02 -0.72 16 38 H 0.12 -1.68 8.14 -2.39 -0.02 -1.70 16 39 H 0.11 -1.30 7.85 -2.39 -0.02 -1.32 16 40 H 0.19 -0.99 8.06 -2.91 -0.02 -1.01 16 41 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 42 H 0.23 -1.48 8.06 -2.91 -0.02 -1.50 16 43 H 0.12 -1.56 8.10 -2.39 -0.02 -1.58 16 44 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16 45 H 0.16 -1.51 6.17 -2.91 -0.02 -1.53 16 46 H 0.15 -1.15 4.81 -2.91 -0.01 -1.16 16 Total: 0.00 -27.83 389.13 0.90 -26.92 By element: Atomic # 1 Polarization: -20.62 SS G_CDS: -0.41 Total: -21.02 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 7.29 Total: 12.00 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -6.05 Total: -6.89 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.98 Total: -10.32 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.05 Total: -0.69 kcal Total: -27.83 0.90 -26.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12360594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.447 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds