Wall clock time and date at job start Sun Mar 7 2021 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.46847 * 2 1 4 4 C 1.50698 * 109.47158 * 120.00124 * 2 1 3 5 5 C 1.38184 * 119.84432 * 15.00320 * 4 2 1 6 6 C 1.38310 * 120.14697 * 180.02562 * 5 4 2 7 7 F 1.35101 * 120.08825 * 180.02562 * 6 5 4 8 8 C 1.39805 * 119.83241 * 359.97438 * 6 5 4 9 9 C 1.47695 * 120.15668 * 179.72518 * 8 6 5 10 10 O 1.21576 * 119.99954 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99865 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99711 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85452 * 23.79922 * 12 11 9 14 14 C 1.53784 * 113.61755 * 155.00167 * 12 11 9 15 15 C 1.53776 * 87.08240 * 89.10977 * 14 12 11 16 16 H 1.08999 * 113.61831 * 270.80303 * 15 14 12 17 17 C 1.53003 * 113.61258 * 139.98299 * 15 14 12 18 18 N 1.46502 * 109.47179 * 175.00663 * 17 15 14 19 19 C 1.36886 * 126.39307 * 269.71358 * 18 17 15 20 20 C 1.34664 * 106.81400 * 179.84081 * 19 18 17 21 21 N 1.34122 * 108.02406 * 0.42413 * 20 19 18 22 22 C 1.30502 * 109.25570 * 359.72779 * 21 20 19 23 23 C 1.53783 * 87.08204 * 25.43688 * 15 14 12 24 24 C 1.39660 * 119.68884 * 0.02562 * 8 6 5 25 25 C 1.38070 * 119.85199 * 359.97438 * 24 8 6 26 26 F 1.35091 * 119.91742 * 179.97438 * 25 24 8 27 27 H 0.96691 * 114.00301 * 60.00263 * 1 2 3 28 28 H 1.09005 * 109.46692 * 239.99906 * 2 1 3 29 29 H 1.48495 * 110.00019 * 60.00417 * 3 2 1 30 30 H 1.48507 * 109.99675 * 181.32044 * 3 2 1 31 31 H 1.08004 * 119.92945 * 0.04016 * 5 4 2 32 32 H 0.96998 * 120.00173 * 359.97438 * 11 9 8 33 33 H 1.08998 * 113.61716 * 203.66536 * 14 12 11 34 34 H 1.09004 * 113.61061 * 334.56425 * 14 12 11 35 35 H 1.09002 * 109.47049 * 295.00300 * 17 15 14 36 36 H 1.08995 * 109.47013 * 54.99861 * 17 15 14 37 37 H 1.08003 * 126.59171 * 359.97438 * 19 18 17 38 38 H 1.08001 * 125.98545 * 180.11577 * 20 19 18 39 39 H 1.08002 * 125.64801 * 180.02562 * 22 21 20 40 40 H 1.08997 * 113.61883 * 220.01908 * 23 15 14 41 41 H 1.09003 * 113.61801 * 89.11335 * 23 15 14 42 42 H 1.08004 * 120.07517 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.0691 -1.4963 1.9710 6 6 1.5233 -2.1507 3.1016 7 9 0.6794 -2.9191 3.8244 8 6 2.8584 -2.0158 3.4940 9 6 3.3496 -2.7066 4.7036 10 8 2.5925 -3.3948 5.3603 11 7 4.6371 -2.5739 5.0793 12 6 5.1245 -3.2595 6.2787 13 1 4.5268 -4.1330 6.5394 14 6 6.6379 -3.5318 6.2607 15 6 6.8146 -2.1506 6.9134 16 1 6.9155 -1.3376 6.1945 17 6 7.8909 -2.1196 8.0003 18 7 8.0664 -0.7447 8.4747 19 6 8.9391 0.1826 7.9725 20 6 8.7711 1.3069 8.6944 21 7 7.8284 1.0696 9.6185 22 6 7.4017 -0.1572 9.4929 23 6 5.3880 -2.3154 7.4637 24 6 3.7238 -1.2198 2.7405 25 6 3.2566 -0.5724 1.6141 26 9 4.0925 0.1983 0.8845 27 1 -0.3933 0.4416 -0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5346 1.7703 -0.0322 31 1 0.0382 -1.5999 1.6661 32 1 5.2413 -2.0252 4.5551 33 1 6.9403 -4.3597 6.9019 34 1 7.0578 -3.5972 5.2569 35 1 7.5859 -2.7547 8.8320 36 1 8.8322 -2.4855 7.5901 37 1 9.6283 0.0406 7.1531 38 1 9.3056 2.2352 8.5569 39 1 6.6424 -0.6251 10.1020 40 1 4.7989 -1.3990 7.4311 41 1 5.3487 -2.8108 8.4339 42 1 4.7563 -1.1110 3.0382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:15 Heat of formation + Delta-G solvation = -15.930964 kcal Electronic energy + Delta-G solvation = -30152.367036 eV Core-core repulsion = 25545.045592 eV Total energy + Delta-G solvation = -4607.321444 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.59845 -49.98770 -42.98398 -41.68416 -40.46574 -39.37001 -37.77755 -35.54980 -34.28459 -32.99995 -31.51682 -30.39258 -29.15661 -27.91677 -27.04141 -24.78487 -24.37160 -23.58131 -22.26362 -22.08857 -21.87540 -20.60627 -19.86703 -19.05022 -18.50975 -18.48406 -18.09659 -17.65564 -17.23133 -17.11914 -16.78677 -16.57471 -16.12912 -16.00994 -15.84748 -15.80382 -15.70752 -15.46630 -15.25092 -15.00290 -14.77489 -14.58689 -14.32197 -14.11453 -13.89485 -13.69328 -13.66352 -13.19523 -13.13210 -13.00895 -12.62704 -12.60305 -11.96287 -11.73937 -11.63879 -11.17763 -11.13007 -10.84679 -10.53135 -10.32957 -10.24922 -9.77768 -9.43154 -5.08693 -0.84646 -0.38843 1.01525 1.12760 1.45049 1.55970 1.70541 1.77580 1.87656 2.22540 2.31544 2.56718 2.75188 2.83462 3.05617 3.07255 3.16367 3.34190 3.41475 3.50142 3.53313 3.74258 3.77577 3.83588 3.92072 3.95788 4.01448 4.16684 4.19874 4.27300 4.37631 4.39277 4.47602 4.54941 4.58679 4.62827 4.66653 4.75002 4.75789 4.80950 4.83372 5.27977 5.31446 5.33608 5.83147 6.14806 6.24205 6.32931 6.91979 7.19318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.076 4.076 3 Si 0.684 3.316 4 C -0.053 4.053 5 C -0.111 4.111 6 C 0.162 3.838 7 F -0.104 7.104 8 C -0.154 4.154 9 C 0.565 3.435 10 O -0.510 6.510 11 N -0.708 5.708 12 C 0.122 3.878 13 H 0.111 0.889 14 C -0.135 4.135 15 C -0.130 4.130 16 H 0.096 0.904 17 C 0.114 3.886 18 N -0.458 5.458 19 C -0.060 4.060 20 C -0.029 4.029 21 N -0.496 5.496 22 C 0.184 3.816 23 C -0.147 4.147 24 C -0.084 4.084 25 C 0.065 3.935 26 F -0.114 7.114 27 H 0.392 0.608 28 H 0.093 0.907 29 H -0.256 1.256 30 H -0.226 1.226 31 H 0.167 0.833 32 H 0.400 0.600 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.202 0.798 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -0.838 -6.789 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.185 4.185 3 Si 0.582 3.418 4 C -0.054 4.054 5 C -0.129 4.129 6 C 0.141 3.859 7 F -0.082 7.082 8 C -0.158 4.158 9 C 0.352 3.648 10 O -0.385 6.385 11 N -0.361 5.361 12 C 0.017 3.983 13 H 0.129 0.871 14 C -0.174 4.174 15 C -0.149 4.149 16 H 0.115 0.885 17 C -0.009 4.009 18 N -0.141 5.141 19 C -0.192 4.192 20 C -0.177 4.177 21 N -0.214 5.214 22 C -0.099 4.099 23 C -0.186 4.186 24 C -0.104 4.104 25 C 0.045 3.955 26 F -0.092 7.092 27 H 0.241 0.759 28 H 0.111 0.889 29 H -0.180 1.180 30 H -0.151 1.151 31 H 0.184 0.816 32 H 0.236 0.764 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.190 0.810 38 H 0.186 0.814 39 H 0.218 0.782 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.514 -0.651 -4.774 5.434 hybrid contribution 0.698 -0.860 -0.720 1.322 sum 3.213 -1.512 -5.494 6.541 Atomic orbital electron populations 1.86368 1.16425 1.82062 1.50344 1.24663 0.86569 1.10921 0.96357 0.95754 0.81100 0.75404 0.89505 1.19478 0.91463 0.96927 0.97580 1.20880 1.02471 0.96435 0.93143 1.17672 0.86568 0.91254 0.90437 1.91653 1.69173 1.71560 1.75792 1.19809 0.93496 1.03682 0.98834 1.17800 0.82238 0.80938 0.83860 1.90896 1.55076 1.38532 1.54007 1.45511 1.10614 1.51585 1.28354 1.21823 0.95326 0.96380 0.84810 0.87082 1.23346 0.94948 0.96905 1.02208 1.23073 0.95083 0.98869 0.97886 0.88527 1.21958 1.00537 0.80292 0.98112 1.45582 1.30064 1.11843 1.26581 1.22745 1.00732 0.90896 1.04851 1.22355 1.00312 0.98955 0.96086 1.70325 1.12959 1.14269 1.23837 1.25012 1.01048 0.90575 0.93242 1.23549 0.95424 1.00884 0.98695 1.21022 1.00537 0.95670 0.93143 1.17194 0.87875 0.97173 0.93226 1.91514 1.70626 1.71396 1.75706 0.75904 0.88938 1.18036 1.15062 0.81566 0.76432 0.87787 0.90135 0.88401 0.88703 0.81029 0.81413 0.78159 0.90587 0.88421 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.11 11.47 -35.23 -0.40 0.70 16 2 C -0.08 0.13 2.95 36.00 0.11 0.24 16 3 Si 0.68 -1.26 30.72 -169.99 -5.22 -6.48 16 4 C -0.05 -0.03 5.16 -104.49 -0.54 -0.57 16 5 C -0.11 -0.14 9.33 -39.57 -0.37 -0.51 16 6 C 0.16 0.43 7.28 -38.97 -0.28 0.15 16 7 F -0.10 -0.52 15.55 2.25 0.04 -0.48 16 8 C -0.15 -0.22 5.88 -104.92 -0.62 -0.84 16 9 C 0.57 1.30 7.77 -12.40 -0.10 1.21 16 10 O -0.51 -3.18 14.94 5.30 0.08 -3.10 16 11 N -0.71 0.88 5.21 -54.00 -0.28 0.60 16 12 C 0.12 -0.24 4.32 -67.11 -0.29 -0.53 16 13 H 0.11 -0.03 7.46 -51.93 -0.39 -0.42 16 14 C -0.14 0.63 7.39 -25.92 -0.19 0.44 16 15 C -0.13 0.53 3.84 -89.81 -0.34 0.18 16 16 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 17 C 0.11 -0.45 5.99 -4.04 -0.02 -0.47 16 18 N -0.46 0.28 2.75 -118.57 -0.33 -0.05 16 19 C -0.06 -0.01 11.58 -16.56 -0.19 -0.20 16 20 C -0.03 -0.08 11.87 -17.82 -0.21 -0.29 16 21 N -0.50 -2.26 11.25 -14.67 -0.17 -2.43 16 22 C 0.18 0.26 12.56 -90.38 -1.14 -0.88 16 23 C -0.15 0.38 7.43 -25.91 -0.19 0.19 16 24 C -0.08 0.06 9.51 -39.11 -0.37 -0.32 16 25 C 0.06 0.02 6.65 -39.49 -0.26 -0.24 16 26 F -0.11 -0.09 12.84 2.25 0.03 -0.06 16 27 H 0.39 -2.69 8.74 45.56 0.40 -2.29 16 28 H 0.09 -0.32 7.96 -51.93 -0.41 -0.74 16 29 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 30 H -0.23 -0.09 5.39 56.52 0.30 0.22 16 31 H 0.17 0.11 7.12 -52.48 -0.37 -0.26 16 32 H 0.40 -1.49 6.73 -40.82 -0.27 -1.77 16 33 H 0.10 -0.58 8.10 -51.93 -0.42 -1.00 16 34 H 0.08 -0.39 8.14 -51.93 -0.42 -0.82 16 35 H 0.10 -0.49 7.84 -51.93 -0.41 -0.90 16 36 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 37 H 0.17 -0.44 8.06 -52.48 -0.42 -0.87 16 38 H 0.17 0.14 8.06 -52.49 -0.42 -0.28 16 39 H 0.20 -0.29 8.06 -52.49 -0.42 -0.72 16 40 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 41 H 0.10 -0.34 7.90 -51.93 -0.41 -0.75 16 42 H 0.15 -0.57 6.41 -52.48 -0.34 -0.90 16 LS Contribution 361.75 15.07 5.45 5.45 Total: 0.00 -11.35 361.75 -10.70 -22.05 By element: Atomic # 1 Polarization: -8.88 SS G_CDS: -4.88 Total: -13.76 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -5.02 Total: -2.45 kcal Atomic # 7 Polarization: -1.10 SS G_CDS: -0.77 Total: -1.87 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: -0.32 Total: -2.40 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.06 Total: -0.54 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.22 Total: -6.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -11.35 -10.70 -22.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.116 kcal (2) G-P(sol) polarization free energy of solvation -11.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds