Wall clock time and date at job start Sun Mar 7 2021 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35657 * 116.99696 * 2 1 4 4 C 1.40137 * 120.15087 * 179.97438 * 3 2 1 5 5 C 1.47537 * 120.19301 * 0.02580 * 4 3 2 6 6 O 1.21584 * 119.99817 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99787 * 179.97438 * 7 5 4 9 9 H 1.09000 * 112.85099 * 23.79881 * 8 7 5 10 10 C 1.53782 * 113.61617 * 155.00257 * 8 7 5 11 11 C 1.53781 * 87.08224 * 89.19919 * 10 8 7 12 12 H 1.09006 * 113.61315 * 270.80477 * 11 10 8 13 13 C 1.52997 * 113.61559 * 139.98357 * 11 10 8 14 14 N 1.46505 * 109.47212 * 174.99892 * 13 11 10 15 15 C 1.36887 * 126.39520 * 89.99891 * 14 13 11 16 16 C 1.34662 * 106.81461 * 180.02562 * 15 14 13 17 17 N 1.34132 * 108.02472 * 359.97438 * 16 15 14 18 18 C 1.30506 * 109.24989 * 359.72974 * 17 16 15 19 19 C 1.53782 * 113.68958 * 252.53849 * 8 7 5 20 20 C 1.39709 * 119.61713 * 180.29550 * 4 3 2 21 21 C 1.37789 * 119.90610 * 359.47084 * 20 4 3 22 22 C 1.50697 * 119.84977 * 180.25014 * 21 20 4 23 23 O 1.42897 * 109.47097 * 65.25837 * 22 21 20 24 24 Si 1.86295 * 109.47344 * 185.25777 * 22 21 20 25 25 C 1.38548 * 120.30060 * 0.51510 * 21 20 4 26 26 C 1.38054 * 120.38982 * 359.75953 * 25 21 20 27 27 H 1.09001 * 109.46576 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47580 * 300.00207 * 1 2 3 29 29 H 1.09001 * 109.47161 * 60.00523 * 1 2 3 30 30 H 0.96997 * 120.00004 * 0.02562 * 7 5 4 31 31 H 1.09003 * 113.61213 * 334.65324 * 10 8 7 32 32 H 1.08994 * 113.61682 * 203.74952 * 10 8 7 33 33 H 1.09002 * 109.47153 * 54.99884 * 13 11 10 34 34 H 1.09001 * 109.46832 * 295.00075 * 13 11 10 35 35 H 1.08004 * 126.58776 * 0.04003 * 15 14 13 36 36 H 1.08000 * 125.98905 * 180.02562 * 16 15 14 37 37 H 1.08006 * 125.64442 * 180.28896 * 18 17 16 38 38 H 1.08998 * 113.61542 * 156.32473 * 19 8 7 39 39 H 1.08998 * 113.61766 * 25.42183 * 19 8 7 40 40 H 1.07994 * 120.04830 * 179.70122 * 20 4 3 41 41 H 1.09000 * 109.47447 * 305.25947 * 22 21 20 42 42 H 0.96706 * 114.00242 * 60.00119 * 23 22 21 43 43 H 1.48500 * 110.00430 * 180.02562 * 24 22 21 44 44 H 1.48506 * 110.00344 * 301.32359 * 24 22 21 45 45 H 1.08007 * 119.80473 * 179.74442 * 25 21 20 46 46 H 1.07994 * 119.95898 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4440 1.2858 0.0005 5 6 4.2550 0.0534 0.0005 6 8 3.7096 -1.0332 0.0005 7 7 5.6005 0.1321 0.0005 8 6 6.4058 -1.0918 0.0011 9 1 5.8707 -1.9507 -0.4038 10 6 7.8112 -0.9047 -0.5944 11 6 8.2775 -0.5362 0.8240 12 1 8.1918 0.5269 1.0493 13 6 9.6474 -1.1122 1.1879 14 7 10.0544 -0.6106 2.5028 15 6 9.7900 -1.1946 3.7123 16 6 10.3427 -0.4069 4.6543 17 7 10.9292 0.6295 4.0369 18 6 10.7657 0.5108 2.7476 19 6 7.0984 -1.3750 1.3446 20 6 4.0666 2.5365 0.0068 21 6 3.3035 3.6838 0.0014 22 6 3.9764 5.0322 0.0024 23 8 4.6994 5.2047 -1.2180 24 14 2.6880 6.3691 0.1551 25 6 1.9204 3.6034 0.0004 26 6 1.2923 2.3740 0.0000 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 6.0356 0.9990 0.0009 31 1 7.8785 -0.0801 -1.3041 32 1 8.2514 -1.8272 -0.9728 33 1 10.3798 -0.8077 0.4402 34 1 9.5880 -2.2002 1.2164 35 1 9.2433 -2.1110 3.8789 36 1 10.3188 -0.5797 5.7201 37 1 11.1355 1.1974 2.0004 38 1 7.3437 -2.4262 1.4963 39 1 6.5902 -0.9303 2.2002 40 1 5.1444 2.6041 0.0121 41 1 4.6655 5.0938 0.8447 42 1 4.1481 5.1616 -2.0113 43 1 3.3388 7.7040 0.1567 44 1 1.7236 6.2762 -0.9703 45 1 1.3300 4.5079 0.0003 46 1 0.2137 2.3194 -0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:19 Heat of formation + Delta-G solvation = 27.875062 kcal Electronic energy + Delta-G solvation = -29732.168263 eV Core-core repulsion = 25591.434531 eV Total energy + Delta-G solvation = -4140.733732 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.93387 -41.88518 -40.83411 -39.27632 -39.21305 -37.25213 -35.38075 -34.06317 -32.44102 -31.85108 -30.40126 -28.87627 -28.45068 -26.74052 -26.18855 -25.54405 -24.08064 -22.71123 -22.22576 -21.81195 -21.60193 -20.35317 -19.49546 -18.54780 -18.36031 -18.11129 -17.27709 -16.93955 -16.85679 -16.47156 -16.17953 -16.12164 -15.88204 -15.81063 -15.68394 -15.02404 -14.94332 -14.81089 -14.63351 -14.55348 -14.41939 -14.18552 -13.78165 -13.59243 -13.48514 -13.39492 -13.14693 -12.73923 -12.45814 -12.34298 -12.23248 -12.06818 -11.72685 -11.65969 -11.35654 -11.09440 -10.90082 -10.57440 -10.46295 -10.30315 -10.04595 -9.42978 -9.33242 -4.90809 -0.30241 0.18304 1.17778 1.31550 1.59310 1.71991 1.94389 1.97473 2.02717 2.24014 2.24937 2.63477 3.37881 3.39339 3.47720 3.52880 3.60969 3.69907 3.70963 3.80384 3.90914 3.95800 4.05014 4.12144 4.18144 4.26541 4.28485 4.34193 4.36143 4.51134 4.59657 4.60515 4.65278 4.68635 4.71682 4.74502 4.80634 4.82426 4.89921 4.98185 5.00130 5.07957 5.15248 5.24503 5.37430 5.52896 5.56260 5.84239 6.26609 6.34362 6.45803 6.50256 7.16340 7.18055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.172 3.828 4 C -0.198 4.198 5 C 0.559 3.441 6 O -0.563 6.563 7 N -0.701 5.701 8 C 0.109 3.891 9 H 0.085 0.915 10 C -0.118 4.118 11 C -0.115 4.115 12 H 0.092 0.908 13 C 0.111 3.889 14 N -0.452 5.452 15 C -0.047 4.047 16 C -0.066 4.066 17 N -0.545 5.545 18 C 0.174 3.826 19 C -0.144 4.144 20 C -0.016 4.016 21 C -0.164 4.164 22 C -0.073 4.073 23 O -0.546 6.546 24 Si 0.760 3.240 25 C -0.044 4.044 26 C -0.212 4.212 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.410 0.590 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.387 0.613 43 H -0.305 1.305 44 H -0.277 1.277 45 H 0.156 0.844 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 1.034 -2.969 4.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.202 4.202 5 C 0.348 3.652 6 O -0.442 6.442 7 N -0.354 5.354 8 C 0.004 3.996 9 H 0.103 0.897 10 C -0.157 4.157 11 C -0.134 4.134 12 H 0.111 0.889 13 C -0.010 4.010 14 N -0.134 5.134 15 C -0.181 4.181 16 C -0.213 4.213 17 N -0.264 5.264 18 C -0.108 4.108 19 C -0.183 4.183 20 C -0.035 4.035 21 C -0.165 4.165 22 C -0.182 4.182 23 O -0.354 6.354 24 Si 0.665 3.335 25 C -0.061 4.061 26 C -0.230 4.230 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.211 0.789 36 H 0.187 0.813 37 H 0.245 0.755 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.236 0.764 43 H -0.234 1.234 44 H -0.203 1.203 45 H 0.173 0.827 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.754 1.356 -2.680 4.075 hybrid contribution -0.288 -0.507 -1.232 1.363 sum -3.042 0.849 -3.912 5.028 Atomic orbital electron populations 1.23452 0.76484 1.05509 1.02872 1.86334 1.23238 1.26362 1.86522 1.19417 0.91333 0.85577 0.91336 1.19406 0.91185 0.93973 1.15605 1.18288 0.82632 0.88623 0.75689 1.90808 1.72445 1.30273 1.50652 1.45487 1.04975 1.09935 1.74970 1.21888 0.91985 0.87762 0.97975 0.89722 1.23289 0.92390 1.04525 0.95456 1.22911 0.92980 1.00267 0.97244 0.88932 1.22218 0.96753 1.01057 0.80988 1.45741 1.40085 1.19705 1.07830 1.23057 1.07593 1.02866 0.84569 1.22595 1.03876 0.94203 1.00645 1.70247 1.24257 1.25799 1.06115 1.25510 0.99134 0.91552 0.94641 1.23519 0.96568 1.01403 0.96818 1.21092 1.00597 0.89231 0.92544 1.20164 0.93798 0.95860 1.06639 1.25098 1.04522 0.98716 0.89900 1.86580 1.38409 1.94252 1.16194 0.94132 0.76896 0.74114 0.88320 1.21321 0.93867 0.97994 0.92952 1.21472 1.01785 0.90883 1.08894 0.87412 0.90692 0.90952 0.75267 0.89328 0.86319 0.86336 0.87297 0.78944 0.81268 0.75549 0.87843 0.92925 0.83394 0.85388 0.76411 1.23379 1.20347 0.82663 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.55 8.57 -68.81 -0.59 -3.14 16 3 C 0.17 0.85 6.70 22.84 0.15 1.01 16 4 C -0.20 -0.94 5.89 -20.01 -0.12 -1.05 16 5 C 0.56 4.54 7.76 86.70 0.67 5.21 16 6 O -0.56 -9.41 14.76 16.94 0.25 -9.16 16 7 N -0.70 -0.29 5.22 -443.20 -2.31 -2.60 16 8 C 0.11 -0.17 4.32 45.52 0.20 0.03 16 9 H 0.08 0.29 7.46 -2.39 -0.02 0.27 16 10 C -0.12 1.05 7.39 31.12 0.23 1.28 16 11 C -0.11 0.92 3.84 -10.27 -0.04 0.88 16 12 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 13 C 0.11 -0.99 5.99 86.38 0.52 -0.48 16 14 N -0.45 0.71 2.75 -529.05 -1.46 -0.75 16 15 C -0.05 -0.06 11.58 83.08 0.96 0.90 16 16 C -0.07 -0.46 11.87 83.52 0.99 0.54 16 17 N -0.55 -5.49 11.25 -200.31 -2.25 -7.74 16 18 C 0.17 0.41 12.56 180.26 2.26 2.68 16 19 C -0.14 0.51 7.43 31.12 0.23 0.74 16 20 C -0.02 0.02 9.16 22.52 0.21 0.22 16 21 C -0.16 0.50 5.34 -19.90 -0.11 0.40 16 22 C -0.07 0.32 2.79 71.24 0.20 0.52 16 23 O -0.55 0.83 12.83 -148.98 -1.91 -1.08 16 24 Si 0.76 -3.79 29.87 68.60 2.05 -1.74 16 25 C -0.04 0.18 8.65 22.30 0.19 0.37 16 26 C -0.21 0.34 9.03 22.34 0.20 0.55 16 27 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.07 -0.40 7.66 -2.39 -0.02 -0.41 16 29 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 30 H 0.41 -1.92 6.73 -92.71 -0.62 -2.54 16 31 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 32 H 0.12 -1.40 8.10 -2.39 -0.02 -1.42 16 33 H 0.12 -1.50 8.14 -2.39 -0.02 -1.52 16 34 H 0.11 -1.20 7.84 -2.39 -0.02 -1.22 16 35 H 0.19 -0.81 8.06 -2.91 -0.02 -0.83 16 36 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.23 -1.09 8.06 -2.91 -0.02 -1.12 16 38 H 0.10 -0.58 7.90 -2.39 -0.02 -0.60 16 39 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.15 -0.75 6.40 -2.91 -0.02 -0.77 16 41 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 42 H 0.39 -2.58 8.70 -74.05 -0.64 -3.23 16 43 H -0.31 -1.11 7.11 99.48 0.71 -0.41 16 44 H -0.28 0.55 7.00 99.48 0.70 1.25 16 45 H 0.16 -1.36 4.81 -2.91 -0.01 -1.37 16 46 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 Total: 0.00 -30.02 381.90 1.43 -28.59 By element: Atomic # 1 Polarization: -17.06 SS G_CDS: -0.21 Total: -17.28 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 7.87 Total: 14.88 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: -6.02 Total: -11.08 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -2.25 Total: -13.38 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.05 Total: -1.74 kcal Total: -30.02 1.43 -28.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.468 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds