Wall clock time and date at job start Sun Mar 7 2021 04:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46928 * 2 1 4 4 C 1.50698 * 109.47311 * 239.99731 * 2 1 3 5 5 C 1.37814 * 119.94377 * 255.02154 * 4 2 1 6 6 C 1.39664 * 119.88355 * 180.02562 * 5 4 2 7 7 C 1.47717 * 120.11995 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00421 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00123 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00121 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84729 * 334.66052 * 10 9 7 12 12 C 1.53780 * 113.61544 * 105.85893 * 10 9 7 13 13 C 1.54054 * 86.98401 * 89.16003 * 12 10 9 14 14 H 1.08998 * 113.61713 * 270.88312 * 13 12 10 15 15 C 1.53004 * 113.69274 * 139.99055 * 13 12 10 16 16 N 1.46495 * 109.47225 * 87.46876 * 15 13 12 17 17 C 1.36880 * 126.39831 * 90.00100 * 16 15 13 18 18 C 1.34668 * 106.81605 * 180.02562 * 17 16 15 19 19 N 1.34125 * 108.02444 * 359.97438 * 18 17 16 20 20 C 1.30503 * 109.25110 * 359.72299 * 19 18 17 21 21 C 1.53778 * 113.61389 * 203.46712 * 10 9 7 22 22 C 1.39634 * 119.76268 * 359.97438 * 6 5 4 23 23 C 1.37861 * 119.87652 * 359.97438 * 22 6 5 24 24 C 1.38628 * 120.11975 * 0.02562 * 23 22 6 25 25 F 1.35100 * 119.87710 * 180.27381 * 24 23 22 26 26 H 0.96698 * 114.00531 * 300.00383 * 1 2 3 27 27 H 1.09002 * 109.46873 * 119.99640 * 2 1 3 28 28 H 1.48493 * 109.99744 * 178.67743 * 3 2 1 29 29 H 1.48501 * 109.99623 * 299.99812 * 3 2 1 30 30 H 1.08001 * 120.05656 * 0.02562 * 5 4 2 31 31 H 0.97004 * 119.99696 * 359.97438 * 9 7 6 32 32 H 1.08999 * 113.61535 * 203.66446 * 12 10 9 33 33 H 1.09001 * 113.61054 * 334.57113 * 12 10 9 34 34 H 1.09008 * 109.46968 * 207.46709 * 15 13 12 35 35 H 1.08998 * 109.47237 * 327.46191 * 15 13 12 36 36 H 1.07996 * 126.59101 * 359.95699 * 17 16 15 37 37 H 1.08001 * 125.99101 * 179.97438 * 18 17 16 38 38 H 1.08006 * 125.64781 * 180.29555 * 20 19 18 39 39 H 1.09007 * 113.61486 * 25.42693 * 21 10 9 40 40 H 1.08994 * 113.61346 * 156.33396 * 21 10 9 41 41 H 1.08003 * 120.06087 * 179.97438 * 22 6 5 42 42 H 1.08000 * 119.93433 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4516 -1.9823 -1.1261 6 6 2.9174 -2.6394 -2.2671 7 6 3.4756 -4.0029 -2.1614 8 8 3.5307 -4.5551 -1.0798 9 7 3.9248 -4.6346 -3.2640 10 6 4.4789 -5.9867 -3.1591 11 1 4.8793 -6.2044 -2.1689 12 6 3.5418 -7.0801 -3.6987 13 6 4.2050 -6.8573 -5.0712 14 1 3.7179 -6.0893 -5.6720 15 6 4.4563 -8.1502 -5.8497 16 7 3.2669 -8.4855 -6.6365 17 6 3.0017 -8.0855 -7.9184 18 6 1.8098 -8.6155 -8.2532 19 7 1.3598 -9.3203 -7.2045 20 6 2.2304 -9.2521 -6.2347 21 6 5.4380 -6.3500 -4.3049 22 6 2.8525 -2.0031 -3.5084 23 6 2.3291 -0.7312 -3.6016 24 6 1.8683 -0.0836 -2.4658 25 9 1.3512 1.1607 -2.5636 26 1 -0.3934 0.4417 0.7650 27 1 1.7923 -0.5138 0.8900 28 1 3.5344 1.7704 0.0322 29 1 1.5614 2.4679 -1.2085 30 1 2.4992 -2.4701 -0.1637 31 1 3.8812 -4.1939 -4.1271 32 1 3.7331 -8.0666 -3.2763 33 1 2.4877 -6.8040 -3.6716 34 1 5.3068 -8.0127 -6.5176 35 1 4.6700 -8.9592 -5.1513 36 1 3.6274 -7.4635 -8.5412 37 1 1.3048 -8.4943 -9.2001 38 1 2.1359 -9.7274 -5.2695 39 1 5.9138 -5.4849 -4.7670 40 1 6.1468 -7.1372 -4.0480 41 1 3.2116 -2.5066 -4.3938 42 1 2.2781 -0.2383 -4.5613 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:24 Heat of formation + Delta-G solvation = 25.131723 kcal Electronic energy + Delta-G solvation = -27407.826290 eV Core-core repulsion = 23271.739434 eV Total energy + Delta-G solvation = -4136.086856 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.43947 -42.97846 -41.73926 -40.48438 -39.17115 -37.65830 -35.54602 -34.20568 -32.97623 -31.98849 -30.38116 -29.00574 -27.05261 -27.03725 -25.54453 -24.04541 -23.49392 -22.24291 -21.88561 -21.69369 -20.59621 -19.12184 -18.95897 -18.55432 -18.41984 -17.97912 -17.27320 -16.91474 -16.69556 -16.38049 -16.04428 -15.92583 -15.46925 -15.23450 -15.16229 -15.03590 -14.99688 -14.74432 -14.70359 -14.33251 -14.23294 -13.92548 -13.81965 -13.68142 -13.53315 -13.06532 -12.86389 -12.59867 -12.35300 -11.96772 -11.62806 -11.46253 -11.18948 -10.84184 -10.69610 -10.52760 -10.32651 -10.22248 -9.91534 -9.42743 -4.98666 -0.61848 -0.14331 1.13150 1.19642 1.48621 1.65352 1.77637 1.80526 1.97200 2.31986 2.41783 2.88252 3.05941 3.09830 3.17255 3.34686 3.41278 3.43962 3.50539 3.62123 3.77493 3.78371 3.83966 3.92734 3.96065 3.98614 4.12989 4.18773 4.37702 4.39587 4.45413 4.54515 4.55945 4.61190 4.67100 4.70761 4.76071 4.81050 4.83195 4.85847 4.94129 5.30044 5.32260 5.44505 5.83559 6.21578 6.24645 6.52374 6.97781 7.19747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.070 4.070 3 Si 0.670 3.330 4 C -0.118 4.118 5 C -0.009 4.009 6 C -0.148 4.148 7 C 0.567 3.433 8 O -0.526 6.526 9 N -0.710 5.710 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.147 4.147 13 C -0.130 4.130 14 H 0.097 0.903 15 C 0.114 3.886 16 N -0.458 5.458 17 C -0.060 4.060 18 C -0.029 4.029 19 N -0.496 5.496 20 C 0.184 3.816 21 C -0.136 4.136 22 C -0.053 4.053 23 C -0.157 4.157 24 C 0.130 3.870 25 F -0.112 7.112 26 H 0.386 0.614 27 H 0.080 0.920 28 H -0.262 1.262 29 H -0.223 1.223 30 H 0.151 0.849 31 H 0.400 0.600 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.202 0.798 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.138 0.862 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 2.299 0.337 5.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.180 4.180 3 Si 0.569 3.431 4 C -0.119 4.119 5 C -0.028 4.028 6 C -0.151 4.151 7 C 0.355 3.645 8 O -0.403 6.403 9 N -0.362 5.362 10 C 0.017 3.983 11 H 0.127 0.873 12 C -0.185 4.185 13 C -0.149 4.149 14 H 0.115 0.885 15 C -0.009 4.009 16 N -0.141 5.141 17 C -0.192 4.192 18 C -0.177 4.177 19 N -0.214 5.214 20 C -0.099 4.099 21 C -0.174 4.174 22 C -0.071 4.071 23 C -0.175 4.175 24 C 0.110 3.890 25 F -0.091 7.091 26 H 0.234 0.766 27 H 0.098 0.902 28 H -0.186 1.186 29 H -0.147 1.147 30 H 0.169 0.831 31 H 0.236 0.764 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.218 0.782 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.156 0.844 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.593 1.826 0.238 4.948 hybrid contribution 0.730 0.281 -0.827 1.139 sum 5.323 2.108 -0.589 5.755 Atomic orbital electron populations 1.86495 1.16592 1.81858 1.50018 1.24605 0.86338 1.10753 0.96328 0.95878 0.81577 0.78605 0.87001 1.19349 1.03855 0.95544 0.93153 1.21038 0.91430 0.91101 0.99260 1.19923 1.05451 0.95331 0.94411 1.18059 0.77370 0.85046 0.84071 1.90820 1.55147 1.67148 1.27143 1.45551 1.63663 1.16629 1.10335 1.21802 0.94563 0.81396 1.00579 0.87275 1.23589 1.00409 0.99797 0.94752 1.23116 0.98492 0.97248 0.96010 0.88515 1.21956 0.86031 0.97753 0.95169 1.45577 1.17913 1.38291 1.12280 1.22738 1.01428 1.07921 0.87137 1.22358 0.95025 1.01112 0.99212 1.70328 1.28574 1.21752 1.00723 1.25015 0.85217 0.98739 1.00907 1.23335 0.96182 1.02119 0.95787 1.21170 0.95527 0.93700 0.96754 1.21122 1.02048 0.96073 0.98291 1.17945 0.95809 0.80883 0.94376 1.91511 1.84118 1.37608 1.95840 0.76571 0.90174 1.18629 1.14724 0.83090 0.76391 0.88513 0.90564 0.88735 0.88420 0.81042 0.81416 0.78160 0.90168 0.87854 0.84386 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.34 12.86 -35.23 -0.45 -0.79 16 2 C -0.07 -0.02 2.79 36.00 0.10 0.08 16 3 Si 0.67 -0.25 30.78 -169.99 -5.23 -5.48 16 4 C -0.12 -0.24 4.80 -104.62 -0.50 -0.74 16 5 C -0.01 -0.02 9.21 -39.20 -0.36 -0.38 16 6 C -0.15 -0.11 5.87 -104.97 -0.62 -0.73 16 7 C 0.57 0.83 7.77 -12.39 -0.10 0.73 16 8 O -0.53 -2.66 15.96 5.31 0.08 -2.58 16 9 N -0.71 1.26 5.21 -54.00 -0.28 0.98 16 10 C 0.12 -0.29 4.30 -67.12 -0.29 -0.58 16 11 H 0.11 -0.08 7.50 -51.93 -0.39 -0.47 16 12 C -0.15 0.42 7.45 -25.78 -0.19 0.23 16 13 C -0.13 0.56 3.85 -89.66 -0.35 0.21 16 14 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 15 C 0.11 -0.47 5.99 -4.04 -0.02 -0.49 16 16 N -0.46 0.36 2.75 -118.58 -0.33 0.04 16 17 C -0.06 0.00 11.58 -16.56 -0.19 -0.19 16 18 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 19 N -0.50 -2.18 11.25 -14.66 -0.16 -2.35 16 20 C 0.18 0.23 12.56 -90.38 -1.14 -0.91 16 21 C -0.14 0.67 7.38 -25.92 -0.19 0.47 16 22 C -0.05 0.07 9.54 -39.20 -0.37 -0.30 16 23 C -0.16 0.03 10.01 -39.58 -0.40 -0.37 16 24 C 0.13 0.29 6.66 -39.28 -0.26 0.03 16 25 F -0.11 -0.40 12.85 2.25 0.03 -0.37 16 26 H 0.39 -1.72 8.74 45.56 0.40 -1.32 16 27 H 0.08 -0.13 7.77 -51.93 -0.40 -0.53 16 28 H -0.26 -0.65 7.11 56.52 0.40 -0.25 16 29 H -0.22 -0.58 5.34 56.52 0.30 -0.28 16 30 H 0.15 0.20 7.59 -52.49 -0.40 -0.20 16 31 H 0.40 -1.69 6.73 -40.82 -0.27 -1.96 16 32 H 0.10 -0.36 7.91 -51.93 -0.41 -0.77 16 33 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.09 -0.48 8.14 -51.92 -0.42 -0.91 16 35 H 0.10 -0.51 7.85 -51.93 -0.41 -0.92 16 36 H 0.17 -0.48 8.06 -52.49 -0.42 -0.90 16 37 H 0.17 0.12 8.06 -52.49 -0.42 -0.31 16 38 H 0.20 -0.33 8.06 -52.48 -0.42 -0.75 16 39 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 40 H 0.10 -0.60 8.10 -51.93 -0.42 -1.02 16 41 H 0.14 -0.66 6.40 -52.48 -0.34 -0.99 16 42 H 0.15 -0.34 8.06 -52.49 -0.42 -0.76 16 LS Contribution 359.13 15.07 5.41 5.41 Total: 0.00 -11.45 359.13 -11.34 -22.79 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: -5.32 Total: -14.43 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -5.09 Total: -3.22 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -0.77 Total: -1.34 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.37 Total: -3.37 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.03 Total: -0.37 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: -5.23 Total: -5.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -11.45 -11.34 -22.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.924 kcal (2) G-P(sol) polarization free energy of solvation -11.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds