Wall clock time and date at job start Sun Mar 7 2021 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.46928 * 2 1 4 4 C 1.50698 * 109.47311 * 239.99731 * 2 1 3 5 5 C 1.37814 * 119.94377 * 255.02154 * 4 2 1 6 6 C 1.39664 * 119.88355 * 180.02562 * 5 4 2 7 7 C 1.47717 * 120.11995 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00421 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00123 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00121 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84729 * 334.66052 * 10 9 7 12 12 C 1.53780 * 113.61544 * 105.85893 * 10 9 7 13 13 C 1.54054 * 86.98401 * 89.16003 * 12 10 9 14 14 H 1.08998 * 113.61713 * 270.88312 * 13 12 10 15 15 C 1.53004 * 113.69274 * 139.99055 * 13 12 10 16 16 N 1.46495 * 109.47225 * 87.46876 * 15 13 12 17 17 C 1.36880 * 126.39831 * 90.00100 * 16 15 13 18 18 C 1.34668 * 106.81605 * 180.02562 * 17 16 15 19 19 N 1.34125 * 108.02444 * 359.97438 * 18 17 16 20 20 C 1.30503 * 109.25110 * 359.72299 * 19 18 17 21 21 C 1.53778 * 113.61389 * 203.46712 * 10 9 7 22 22 C 1.39634 * 119.76268 * 359.97438 * 6 5 4 23 23 C 1.37861 * 119.87652 * 359.97438 * 22 6 5 24 24 C 1.38628 * 120.11975 * 0.02562 * 23 22 6 25 25 F 1.35100 * 119.87710 * 180.27381 * 24 23 22 26 26 H 0.96698 * 114.00531 * 300.00383 * 1 2 3 27 27 H 1.09002 * 109.46873 * 119.99640 * 2 1 3 28 28 H 1.48493 * 109.99744 * 178.67743 * 3 2 1 29 29 H 1.48501 * 109.99623 * 299.99812 * 3 2 1 30 30 H 1.08001 * 120.05656 * 0.02562 * 5 4 2 31 31 H 0.97004 * 119.99696 * 359.97438 * 9 7 6 32 32 H 1.08999 * 113.61535 * 203.66446 * 12 10 9 33 33 H 1.09001 * 113.61054 * 334.57113 * 12 10 9 34 34 H 1.09008 * 109.46968 * 207.46709 * 15 13 12 35 35 H 1.08998 * 109.47237 * 327.46191 * 15 13 12 36 36 H 1.07996 * 126.59101 * 359.95699 * 17 16 15 37 37 H 1.08001 * 125.99101 * 179.97438 * 18 17 16 38 38 H 1.08006 * 125.64781 * 180.29555 * 20 19 18 39 39 H 1.09007 * 113.61486 * 25.42693 * 21 10 9 40 40 H 1.08994 * 113.61346 * 156.33396 * 21 10 9 41 41 H 1.08003 * 120.06087 * 179.97438 * 22 6 5 42 42 H 1.08000 * 119.93433 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4516 -1.9823 -1.1261 6 6 2.9174 -2.6394 -2.2671 7 6 3.4756 -4.0029 -2.1614 8 8 3.5307 -4.5551 -1.0798 9 7 3.9248 -4.6346 -3.2640 10 6 4.4789 -5.9867 -3.1591 11 1 4.8793 -6.2044 -2.1689 12 6 3.5418 -7.0801 -3.6987 13 6 4.2050 -6.8573 -5.0712 14 1 3.7179 -6.0893 -5.6720 15 6 4.4563 -8.1502 -5.8497 16 7 3.2669 -8.4855 -6.6365 17 6 3.0017 -8.0855 -7.9184 18 6 1.8098 -8.6155 -8.2532 19 7 1.3598 -9.3203 -7.2045 20 6 2.2304 -9.2521 -6.2347 21 6 5.4380 -6.3500 -4.3049 22 6 2.8525 -2.0031 -3.5084 23 6 2.3291 -0.7312 -3.6016 24 6 1.8683 -0.0836 -2.4658 25 9 1.3512 1.1607 -2.5636 26 1 -0.3934 0.4417 0.7650 27 1 1.7923 -0.5138 0.8900 28 1 3.5344 1.7704 0.0322 29 1 1.5614 2.4679 -1.2085 30 1 2.4992 -2.4701 -0.1637 31 1 3.8812 -4.1939 -4.1271 32 1 3.7331 -8.0666 -3.2763 33 1 2.4877 -6.8040 -3.6716 34 1 5.3068 -8.0127 -6.5176 35 1 4.6700 -8.9592 -5.1513 36 1 3.6274 -7.4635 -8.5412 37 1 1.3048 -8.4943 -9.2001 38 1 2.1359 -9.7274 -5.2695 39 1 5.9138 -5.4849 -4.7670 40 1 6.1468 -7.1372 -4.0480 41 1 3.2116 -2.5066 -4.3938 42 1 2.2781 -0.2383 -4.5613 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:23 Heat of formation + Delta-G solvation = 25.044163 kcal Electronic energy + Delta-G solvation = -27407.830087 eV Core-core repulsion = 23271.739434 eV Total energy + Delta-G solvation = -4136.090653 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.59359 -42.94738 -41.72470 -40.37956 -39.18841 -37.65987 -35.49865 -34.18637 -32.97127 -32.00852 -30.38073 -28.84635 -27.04629 -26.74123 -25.53231 -23.91283 -23.49816 -22.25315 -21.82691 -21.69276 -20.41144 -19.11146 -19.01338 -18.55229 -18.33319 -18.00362 -17.27362 -16.97825 -16.54979 -16.36200 -16.08686 -15.81097 -15.36922 -15.25402 -15.15994 -14.98234 -14.95016 -14.82771 -14.64003 -14.26946 -14.21425 -13.93619 -13.74389 -13.52773 -13.42166 -12.88932 -12.80967 -12.37928 -12.35961 -11.76549 -11.60514 -11.36094 -11.31343 -10.89964 -10.69133 -10.49711 -10.33208 -10.19838 -9.94366 -9.43878 -4.99752 -0.67920 -0.15442 1.16391 1.19501 1.42744 1.60472 1.86461 1.93163 1.93802 2.23768 2.38635 2.84273 3.13315 3.35708 3.40178 3.43980 3.47021 3.69844 3.71313 3.77608 3.83651 3.89159 3.97883 4.08436 4.12681 4.18538 4.25610 4.48621 4.52243 4.58923 4.61476 4.65980 4.73603 4.75455 4.78713 4.79866 4.82618 4.91960 4.97501 4.99491 5.11316 5.35829 5.41302 5.50656 5.84118 6.29984 6.32564 6.79451 6.98019 7.17446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.080 4.080 3 Si 0.759 3.241 4 C -0.136 4.136 5 C -0.024 4.024 6 C -0.155 4.155 7 C 0.565 3.435 8 O -0.571 6.571 9 N -0.694 5.694 10 C 0.108 3.892 11 H 0.089 0.911 12 C -0.148 4.148 13 C -0.116 4.116 14 H 0.094 0.906 15 C 0.110 3.890 16 N -0.451 5.451 17 C -0.046 4.046 18 C -0.068 4.068 19 N -0.548 5.548 20 C 0.174 3.826 21 C -0.116 4.116 22 C -0.039 4.039 23 C -0.154 4.154 24 C 0.101 3.899 25 F -0.126 7.126 26 H 0.406 0.594 27 H 0.097 0.903 28 H -0.302 1.302 29 H -0.266 1.266 30 H 0.146 0.854 31 H 0.414 0.586 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.203 0.797 37 H 0.171 0.829 38 H 0.220 0.780 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.178 0.822 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 2.137 -0.730 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.189 4.189 3 Si 0.663 3.337 4 C -0.137 4.137 5 C -0.043 4.043 6 C -0.158 4.158 7 C 0.353 3.647 8 O -0.451 6.451 9 N -0.346 5.346 10 C 0.003 3.997 11 H 0.107 0.893 12 C -0.187 4.187 13 C -0.136 4.136 14 H 0.112 0.888 15 C -0.011 4.011 16 N -0.133 5.133 17 C -0.180 4.180 18 C -0.215 4.215 19 N -0.267 5.267 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.058 4.058 23 C -0.172 4.172 24 C 0.082 3.918 25 F -0.104 7.104 26 H 0.257 0.743 27 H 0.115 0.885 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.219 0.781 37 H 0.188 0.812 38 H 0.237 0.763 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.195 0.805 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.178 1.663 -0.834 6.452 hybrid contribution 0.264 0.318 -0.527 0.669 sum 6.442 1.981 -1.361 6.876 Atomic orbital electron populations 1.86445 1.16739 1.82410 1.51638 1.24767 0.86386 1.11221 0.96497 0.94962 0.77709 0.76369 0.84625 1.19602 1.04283 0.95869 0.93957 1.21097 0.92233 0.91284 0.99684 1.20033 1.05499 0.95185 0.95126 1.18211 0.77137 0.85229 0.84158 1.90795 1.57249 1.68181 1.28904 1.45463 1.62213 1.16773 1.10102 1.21955 0.95860 0.81058 1.00825 0.89254 1.23612 0.98908 1.00030 0.96145 1.22988 0.98405 0.97182 0.94981 0.88769 1.22238 0.85166 0.98161 0.95562 1.45753 1.18199 1.37200 1.12156 1.23151 1.00613 1.06747 0.87460 1.22637 0.96700 1.02667 0.99517 1.70243 1.30672 1.23563 1.02198 1.25368 0.85419 0.99034 1.01100 1.23280 0.95632 1.02862 0.93662 1.21528 0.94005 0.93105 0.97129 1.21460 1.00966 0.96301 0.98506 1.18337 0.97112 0.80892 0.95491 1.91483 1.84536 1.38415 1.95978 0.74250 0.88499 1.22927 1.19252 0.83626 0.74741 0.87583 0.92928 0.86692 0.86936 0.78064 0.81195 0.76331 0.88941 0.86242 0.80525 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.09 12.86 -148.98 -1.92 -3.01 16 2 C -0.08 -0.12 2.79 71.24 0.20 0.08 16 3 Si 0.76 0.30 30.78 68.60 2.11 2.41 16 4 C -0.14 -0.73 4.80 -19.86 -0.10 -0.82 16 5 C -0.02 -0.12 9.21 22.51 0.21 0.09 16 6 C -0.16 -0.30 5.87 -20.09 -0.12 -0.42 16 7 C 0.56 1.99 7.77 86.75 0.67 2.67 16 8 O -0.57 -6.81 15.96 -3.93 -0.06 -6.87 16 9 N -0.69 2.93 5.21 -443.02 -2.31 0.62 16 10 C 0.11 -0.58 4.30 45.52 0.20 -0.39 16 11 H 0.09 -0.07 7.50 -2.39 -0.02 -0.09 16 12 C -0.15 0.94 7.45 31.21 0.23 1.17 16 13 C -0.12 1.26 3.85 -10.17 -0.04 1.22 16 14 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 15 C 0.11 -1.20 5.99 86.38 0.52 -0.69 16 16 N -0.45 1.37 2.75 -529.06 -1.46 -0.09 16 17 C -0.05 0.05 11.58 83.09 0.96 1.02 16 18 C -0.07 -0.37 11.87 83.52 0.99 0.62 16 19 N -0.55 -5.38 11.25 -200.31 -2.25 -7.64 16 20 C 0.17 0.42 12.56 180.26 2.26 2.68 16 21 C -0.12 1.44 7.38 31.12 0.23 1.67 16 22 C -0.04 0.15 9.54 22.52 0.21 0.36 16 23 C -0.15 0.14 10.01 22.27 0.22 0.36 16 24 C 0.10 0.54 6.66 22.47 0.15 0.69 16 25 F -0.13 -1.07 12.85 44.97 0.58 -0.49 16 26 H 0.41 -3.54 8.74 -74.06 -0.65 -4.19 16 27 H 0.10 -0.24 7.77 -2.39 -0.02 -0.26 16 28 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 29 H -0.27 -1.88 5.34 99.48 0.53 -1.35 16 30 H 0.15 0.73 7.59 -2.91 -0.02 0.71 16 31 H 0.41 -4.31 6.73 -92.71 -0.62 -4.93 16 32 H 0.11 -0.88 7.91 -2.39 -0.02 -0.90 16 33 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.11 -1.63 8.14 -2.38 -0.02 -1.65 16 35 H 0.11 -1.51 7.85 -2.39 -0.02 -1.52 16 36 H 0.20 -1.65 8.06 -2.91 -0.02 -1.68 16 37 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.22 -0.74 8.06 -2.91 -0.02 -0.77 16 39 H 0.09 -1.29 8.14 -2.38 -0.02 -1.31 16 40 H 0.12 -1.78 8.10 -2.39 -0.02 -1.80 16 41 H 0.18 -2.19 6.40 -2.91 -0.02 -2.21 16 42 H 0.17 -1.05 8.06 -2.91 -0.02 -1.08 16 Total: 0.00 -30.83 359.13 1.16 -29.67 By element: Atomic # 1 Polarization: -24.58 SS G_CDS: -0.34 Total: -24.92 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.81 Total: 10.33 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -6.02 Total: -7.10 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.98 Total: -9.88 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.58 Total: -0.49 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.11 Total: 2.41 kcal Total: -30.83 1.16 -29.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.714 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds