Wall clock time and date at job start Sun Mar 7 2021 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47488 * 2 1 4 4 C 1.50701 * 109.46986 * 239.99627 * 2 1 3 5 5 C 1.35086 * 126.07044 * 105.26631 * 4 2 1 6 6 N 1.35039 * 107.97524 * 180.25738 * 5 4 2 7 7 C 1.46502 * 125.93102 * 179.72376 * 6 5 4 8 8 C 1.50698 * 109.47241 * 125.00063 * 7 6 5 9 9 O 1.21284 * 120.00075 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00038 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00017 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84693 * 23.79556 * 11 10 8 13 13 C 1.53775 * 113.61476 * 154.99389 * 11 10 8 14 14 C 1.53787 * 87.07950 * 89.11655 * 13 11 10 15 15 H 1.08999 * 113.60887 * 270.88170 * 14 13 11 16 16 C 1.52995 * 113.61683 * 140.06782 * 14 13 11 17 17 N 1.46491 * 109.47449 * 174.99685 * 16 14 13 18 18 C 1.36876 * 126.40138 * 269.71310 * 17 16 14 19 19 C 1.34667 * 106.82385 * 179.83930 * 18 17 16 20 20 N 1.34131 * 108.01510 * 0.42430 * 19 18 17 21 21 C 1.30490 * 109.25800 * 359.72772 * 20 19 18 22 22 C 1.53775 * 87.08101 * 25.42901 * 14 13 11 23 23 N 1.40067 * 108.13973 * 359.74304 * 6 5 4 24 24 C 1.31618 * 108.11190 * 0.02562 * 23 6 5 25 25 C 1.48413 * 126.04310 * 179.97438 * 24 23 6 26 26 C 1.39322 * 120.12113 * 317.49322 * 25 24 23 27 27 C 1.38022 * 119.88474 * 179.97438 * 26 25 24 28 28 C 1.38322 * 120.11282 * 359.97438 * 27 26 25 29 29 C 1.38318 * 120.24506 * 0.02562 * 28 27 26 30 30 C 1.38021 * 120.11779 * 0.02562 * 29 28 27 31 31 H 0.96697 * 113.99957 * 59.99686 * 1 2 3 32 32 H 1.09005 * 109.46919 * 119.99768 * 2 1 3 33 33 H 1.48497 * 110.00100 * 298.68423 * 3 2 1 34 34 H 1.48508 * 109.99916 * 60.00007 * 3 2 1 35 35 H 1.07997 * 126.01261 * 359.95803 * 5 4 2 36 36 H 1.09001 * 109.47114 * 245.00328 * 7 6 5 37 37 H 1.09001 * 109.47109 * 4.99515 * 7 6 5 38 38 H 0.96999 * 120.00164 * 359.97438 * 10 8 7 39 39 H 1.09000 * 113.61373 * 203.65707 * 13 11 10 40 40 H 1.08999 * 113.61608 * 334.56620 * 13 11 10 41 41 H 1.09002 * 109.46794 * 294.99808 * 16 14 13 42 42 H 1.08999 * 109.47060 * 54.99350 * 16 14 13 43 43 H 1.08009 * 126.58872 * 359.97438 * 18 17 16 44 44 H 1.07996 * 125.99623 * 180.11430 * 19 18 17 45 45 H 1.08005 * 125.65013 * 179.97438 * 21 20 19 46 46 H 1.09003 * 113.61584 * 220.01735 * 22 14 13 47 47 H 1.09003 * 113.61373 * 89.11697 * 22 14 13 48 48 H 1.08001 * 120.05745 * 359.97438 * 26 25 24 49 49 H 1.07997 * 119.94731 * 180.02562 * 27 26 25 50 50 H 1.08009 * 119.87468 * 179.72841 * 28 27 26 51 51 H 1.07997 * 119.93768 * 179.97438 * 29 28 27 52 52 H 1.08005 * 120.05644 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4675 -0.1254 -2.3236 6 7 2.7860 -1.0989 -3.2035 7 6 3.3877 -0.9006 -4.5244 8 6 4.6499 -1.7173 -4.6292 9 8 5.0115 -2.3976 -3.6925 10 7 5.3775 -1.6908 -5.7634 11 6 6.6043 -2.4852 -5.8654 12 1 6.6159 -3.3353 -5.1834 13 6 6.9840 -2.8493 -7.3104 14 6 7.7718 -1.5293 -7.3526 15 1 7.1782 -0.6770 -7.6834 16 6 9.1122 -1.6385 -8.0821 17 7 9.7282 -0.3126 -8.1731 18 6 9.5646 0.5912 -9.1879 19 6 10.3023 1.6721 -8.8700 20 7 10.9074 1.4310 -7.6975 21 6 10.5682 0.2442 -7.2741 22 6 7.8894 -1.6417 -5.8235 23 7 2.4407 -2.3312 -2.6342 24 6 1.9278 -2.1027 -1.4438 25 6 1.4287 -3.1300 -0.4961 26 6 0.6623 -4.1965 -0.9609 27 6 0.2011 -5.1495 -0.0753 28 6 0.4992 -5.0472 1.2715 29 6 1.2597 -3.9904 1.7385 30 6 1.7250 -3.0314 0.8617 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5138 0.8901 33 1 1.5880 2.4585 -1.2242 34 1 1.5616 2.4679 1.2086 35 1 2.6113 0.9349 -2.4702 36 1 2.6850 -1.2174 -5.2951 37 1 3.6251 0.1544 -4.6609 38 1 5.0885 -1.1465 -6.5124 39 1 7.6134 -3.7360 -7.3862 40 1 6.1341 -2.8727 -7.9925 41 1 9.7721 -2.3087 -7.5311 42 1 8.9489 -2.0329 -9.0850 43 1 8.9585 0.4630 -10.0727 44 1 10.3948 2.5729 -9.4585 45 1 10.9041 -0.2166 -6.3568 46 1 7.7705 -0.6902 -5.3053 47 1 8.7663 -2.1983 -5.4928 48 1 0.4294 -4.2775 -2.0124 49 1 -0.3928 -5.9768 -0.4346 50 1 0.1326 -5.7926 1.9618 51 1 1.4891 -3.9152 2.7911 52 1 2.3192 -2.2069 1.2273 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:27 Heat of formation + Delta-G solvation = 145.619350 kcal Electronic energy + Delta-G solvation = -35348.446821 eV Core-core repulsion = 30704.895576 eV Total energy + Delta-G solvation = -4643.551245 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.93154 -42.52438 -41.25442 -39.87617 -39.42721 -37.83024 -35.39260 -34.84024 -33.87010 -32.34246 -31.94376 -31.43601 -30.37328 -29.27664 -28.28841 -26.72595 -26.08097 -24.61145 -23.83590 -23.45099 -22.25983 -22.11168 -21.79173 -21.56605 -21.01544 -20.32722 -18.83668 -18.62510 -18.17580 -17.69560 -17.41705 -16.92152 -16.59668 -16.53085 -16.24787 -16.20052 -15.71309 -15.63207 -15.59606 -15.41022 -15.19419 -14.91256 -14.90683 -14.66238 -14.35183 -14.33861 -14.24372 -14.18377 -13.82254 -13.78004 -13.59165 -13.42360 -13.26490 -12.78648 -12.58667 -12.37976 -12.34360 -12.15983 -11.90214 -11.72377 -11.62740 -11.36109 -11.29789 -10.88096 -10.69655 -10.46541 -10.34554 -10.13651 -9.88726 -9.80819 -9.41976 -9.32830 -4.86502 0.10182 0.45501 0.77605 1.18229 1.25244 1.39172 1.43780 1.59732 1.66034 1.94429 2.00649 2.04199 2.25710 2.87445 3.31835 3.38588 3.48137 3.52401 3.54070 3.67677 3.72118 3.78287 3.90926 3.91137 3.97664 4.05590 4.08406 4.09824 4.14053 4.15868 4.23051 4.27433 4.42360 4.51293 4.52249 4.54811 4.63513 4.69376 4.75047 4.75742 4.80960 4.82563 4.85862 4.96723 4.98639 5.00977 5.09973 5.14579 5.27478 5.37852 5.53453 5.54624 5.56295 5.59807 5.86101 5.87686 6.02525 6.33610 6.41469 6.56120 6.61328 7.12903 7.19312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.051 4.051 3 Si 0.769 3.231 4 C -0.261 4.261 5 C 0.073 3.927 6 N -0.359 5.359 7 C 0.109 3.891 8 C 0.499 3.501 9 O -0.561 6.561 10 N -0.697 5.697 11 C 0.112 3.888 12 H 0.076 0.924 13 C -0.120 4.120 14 C -0.112 4.112 15 H 0.099 0.901 16 C 0.109 3.891 17 N -0.451 5.451 18 C -0.046 4.046 19 C -0.067 4.067 20 N -0.546 5.546 21 C 0.174 3.826 22 C -0.145 4.145 23 N -0.291 5.291 24 C 0.111 3.889 25 C -0.027 4.027 26 C -0.112 4.112 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.124 4.124 30 C -0.105 4.105 31 H 0.382 0.618 32 H 0.108 0.892 33 H -0.257 1.257 34 H -0.303 1.303 35 H 0.217 0.783 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.202 0.798 44 H 0.171 0.829 45 H 0.219 0.781 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.115 0.885 49 H 0.142 0.858 50 H 0.146 0.854 51 H 0.148 0.852 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 0.581 -6.977 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.160 4.160 3 Si 0.672 3.328 4 C -0.272 4.272 5 C -0.072 4.072 6 N -0.141 5.141 7 C -0.014 4.014 8 C 0.284 3.716 9 O -0.438 6.438 10 N -0.350 5.350 11 C 0.006 3.994 12 H 0.095 0.905 13 C -0.158 4.158 14 C -0.131 4.131 15 H 0.117 0.883 16 C -0.012 4.012 17 N -0.133 5.133 18 C -0.180 4.180 19 C -0.214 4.214 20 N -0.266 5.266 21 C -0.109 4.109 22 C -0.184 4.184 23 N -0.112 5.112 24 C -0.054 4.054 25 C -0.029 4.029 26 C -0.132 4.132 27 C -0.145 4.145 28 C -0.138 4.138 29 C -0.142 4.142 30 C -0.124 4.124 31 H 0.231 0.769 32 H 0.125 0.875 33 H -0.183 1.183 34 H -0.231 1.231 35 H 0.233 0.767 36 H 0.159 0.841 37 H 0.193 0.807 38 H 0.257 0.743 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.219 0.781 44 H 0.189 0.811 45 H 0.236 0.764 46 H 0.077 0.923 47 H 0.117 0.883 48 H 0.133 0.867 49 H 0.159 0.841 50 H 0.164 0.836 51 H 0.165 0.835 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.690 0.159 -6.422 6.461 hybrid contribution -1.807 0.040 -0.556 1.891 sum -1.117 0.200 -6.979 7.070 Atomic orbital electron populations 1.86592 1.18927 1.80461 1.49655 1.24711 0.82969 1.11741 0.96568 0.94228 0.89994 0.70837 0.77791 1.20548 1.14080 0.92381 1.00218 1.22827 0.98378 0.96750 0.89227 1.48121 1.47545 1.03639 1.14783 1.21976 0.93031 1.04570 0.81847 1.21032 0.85536 0.82256 0.82769 1.90830 1.71169 1.42504 1.39318 1.45441 1.24652 1.48493 1.16428 1.21816 0.83950 0.94364 0.99274 0.90525 1.23277 1.00624 0.97621 0.94280 1.22906 0.95725 0.99475 0.94983 0.88270 1.22219 0.94201 0.80393 1.04393 1.45739 1.35128 1.15469 1.16937 1.23152 1.06889 0.91270 0.96683 1.22634 1.01691 1.01087 0.95964 1.70244 1.26519 1.16310 1.13482 1.25352 0.95879 0.91363 0.98305 1.23521 0.98236 1.00445 0.96204 1.77701 1.19502 1.03958 1.10065 1.20818 0.98331 0.93577 0.92714 1.17981 0.99054 0.93692 0.92186 1.21262 0.97865 0.94161 0.99886 1.21359 1.00272 0.99110 0.93767 1.21579 0.97733 0.98570 0.95877 1.21414 0.97862 0.94223 1.00726 1.21331 0.99735 0.99617 0.91754 0.76947 0.87466 1.18264 1.23069 0.76678 0.84133 0.80675 0.74305 0.87022 0.89041 0.87281 0.86865 0.78113 0.81139 0.76416 0.92316 0.88299 0.86655 0.84065 0.83583 0.83473 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.05 12.88 -148.98 -1.92 -4.97 16 2 C -0.05 -0.12 2.51 71.24 0.18 0.06 16 3 Si 0.77 -2.00 30.80 68.60 2.11 0.11 16 4 C -0.26 -1.15 5.35 -19.95 -0.11 -1.26 16 5 C 0.07 -0.05 9.96 83.47 0.83 0.78 16 6 N -0.36 -0.89 3.40 -351.91 -1.20 -2.09 16 7 C 0.11 -0.77 6.99 85.63 0.60 -0.17 16 8 C 0.50 -0.19 7.86 87.66 0.69 0.50 16 9 O -0.56 -6.82 15.30 -3.04 -0.05 -6.87 16 10 N -0.70 5.21 5.26 -440.04 -2.32 2.90 16 11 C 0.11 -0.66 4.32 45.51 0.20 -0.46 16 12 H 0.08 0.07 7.46 -2.39 -0.02 0.06 16 13 C -0.12 1.46 7.39 31.12 0.23 1.69 16 14 C -0.11 1.32 3.84 -10.27 -0.04 1.28 16 15 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 16 C 0.11 -1.24 5.99 86.38 0.52 -0.72 16 17 N -0.45 1.81 2.75 -529.09 -1.46 0.35 16 18 C -0.05 0.11 11.58 83.09 0.96 1.07 16 19 C -0.07 -0.28 11.87 83.52 0.99 0.71 16 20 N -0.55 -4.64 11.25 -200.31 -2.25 -6.89 16 21 C 0.17 0.22 12.56 180.26 2.26 2.49 16 22 C -0.15 1.08 7.43 31.12 0.23 1.31 16 23 N -0.29 -3.37 11.67 -48.16 -0.56 -3.93 16 24 C 0.11 1.19 6.67 42.53 0.28 1.47 16 25 C -0.03 -0.30 5.74 -20.04 -0.12 -0.42 16 26 C -0.11 -1.14 9.78 22.48 0.22 -0.92 16 27 C -0.13 -0.80 10.03 22.24 0.22 -0.58 16 28 C -0.12 -0.54 10.04 22.31 0.22 -0.31 16 29 C -0.12 -0.64 10.03 22.24 0.22 -0.41 16 30 C -0.11 -0.85 8.89 22.48 0.20 -0.65 16 31 H 0.38 -0.32 8.70 -74.06 -0.64 -0.97 16 32 H 0.11 0.32 5.55 -2.38 -0.01 0.30 16 33 H -0.26 0.73 7.00 99.48 0.70 1.42 16 34 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 35 H 0.22 -2.10 6.32 -2.91 -0.02 -2.12 16 36 H 0.14 -1.63 8.14 -2.39 -0.02 -1.65 16 37 H 0.18 -2.97 8.07 -2.39 -0.02 -2.99 16 38 H 0.42 -6.18 8.70 -92.71 -0.81 -6.98 16 39 H 0.11 -1.52 8.10 -2.39 -0.02 -1.54 16 40 H 0.09 -1.25 8.14 -2.39 -0.02 -1.27 16 41 H 0.11 -1.44 7.85 -2.39 -0.02 -1.45 16 42 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 43 H 0.20 -1.85 8.06 -2.91 -0.02 -1.88 16 44 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 45 H 0.22 -0.94 8.06 -2.91 -0.02 -0.97 16 46 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.10 -0.81 7.90 -2.39 -0.02 -0.83 16 48 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 50 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 51 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 52 H 0.13 0.67 6.21 -2.91 -0.02 0.66 16 Total: 0.00 -39.44 438.24 0.71 -38.73 By element: Atomic # 1 Polarization: -22.35 SS G_CDS: -0.45 Total: -22.80 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 8.80 Total: 5.46 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -7.78 Total: -9.66 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.97 Total: -11.84 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.11 Total: 0.11 kcal Total: -39.44 0.71 -38.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.347 kcal (2) G-P(sol) polarization free energy of solvation -39.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds