Wall clock time and date at job start Sun Mar 7 2021 04:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.46927 * 2 1 4 4 C 1.50699 * 109.46672 * 120.00146 * 2 1 3 5 5 C 1.34832 * 125.65555 * 65.00320 * 4 2 1 6 6 C 1.40793 * 107.05154 * 180.02562 * 5 4 2 7 7 C 1.36108 * 106.73192 * 0.02562 * 6 5 4 8 8 C 1.47571 * 125.94396 * 179.97438 * 7 6 5 9 9 C 1.39925 * 119.95481 * 359.97438 * 8 7 6 10 10 C 1.36424 * 120.28142 * 179.97438 * 9 8 7 11 11 C 1.39878 * 120.18242 * 0.02562 * 10 9 8 12 12 C 1.47295 * 120.04543 * 180.02562 * 11 10 9 13 13 O 1.21634 * 119.99908 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00170 * 359.97438 * 12 11 10 15 15 C 1.46501 * 120.00233 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84953 * 334.66902 * 15 14 12 17 17 C 1.53778 * 113.61406 * 105.86244 * 15 14 12 18 18 C 1.54052 * 86.98507 * 89.16364 * 17 15 14 19 19 H 1.09008 * 113.61302 * 270.88374 * 18 17 15 20 20 C 1.53002 * 113.61973 * 139.98242 * 18 17 15 21 21 N 1.46494 * 109.47447 * 87.50821 * 20 18 17 22 22 C 1.36881 * 126.40143 * 89.99715 * 21 20 18 23 23 C 1.34667 * 106.81940 * 180.02562 * 22 21 20 24 24 N 1.34136 * 108.02182 * 0.02562 * 23 22 21 25 25 C 1.30500 * 109.25081 * 359.72474 * 24 23 22 26 26 C 1.53778 * 87.07587 * 25.43308 * 18 17 15 27 27 C 1.40410 * 119.90895 * 359.97438 * 11 10 9 28 28 O 1.35679 * 120.13557 * 180.02562 * 27 11 10 29 29 C 1.38270 * 119.72393 * 0.02562 * 27 11 10 30 30 O 1.34235 * 125.65154 * 245.32296 * 4 2 1 31 31 H 0.96698 * 114.00077 * 299.99800 * 1 2 3 32 32 H 1.09000 * 109.46731 * 239.99877 * 2 1 3 33 33 H 1.48492 * 110.00406 * 299.99571 * 3 2 1 34 34 H 1.48498 * 110.00003 * 61.32431 * 3 2 1 35 35 H 1.08006 * 126.47434 * 0.05185 * 5 4 2 36 36 H 1.08003 * 126.63675 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.86013 * 359.69846 * 9 8 7 38 38 H 1.07993 * 119.91352 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99671 * 0.02562 * 14 12 11 40 40 H 1.08994 * 113.62226 * 203.66624 * 17 15 14 41 41 H 1.09003 * 113.61490 * 334.57022 * 17 15 14 42 42 H 1.09003 * 109.46586 * 207.50528 * 20 18 17 43 43 H 1.09002 * 109.46907 * 327.50217 * 20 18 17 44 44 H 1.08000 * 126.58762 * 359.96474 * 22 21 20 45 45 H 1.08003 * 125.99345 * 180.02562 * 23 22 21 46 46 H 1.08007 * 125.64860 * 180.29281 * 25 24 23 47 47 H 1.09009 * 113.61280 * 220.02494 * 26 18 17 48 48 H 1.08994 * 113.61525 * 89.11877 * 26 18 17 49 49 H 0.96706 * 113.99628 * 269.97097 * 28 27 11 50 50 H 1.08002 * 120.09469 * 179.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7567 -2.0180 1.5093 6 6 2.3798 -2.2628 2.7479 7 6 2.9062 -1.0781 3.1626 8 6 3.6540 -0.8535 4.4149 9 6 3.8739 -1.9167 5.2976 10 6 4.5648 -1.7167 6.4568 11 6 5.0580 -0.4461 6.7713 12 6 5.8040 -0.2336 8.0234 13 8 6.2329 0.8715 8.2958 14 7 6.0114 -1.2637 8.8674 15 6 6.7538 -1.0526 10.1125 16 1 7.4399 -0.2074 10.0581 17 6 5.8638 -1.0438 11.3665 18 6 6.0817 -2.5674 11.4325 19 1 5.3454 -3.1387 10.8670 20 6 6.2824 -3.0969 12.8539 21 7 4.9793 -3.3996 13.4508 22 6 4.3162 -4.5956 13.3904 23 6 3.1629 -4.4364 14.0673 24 7 3.1226 -3.1773 14.5281 25 6 4.2098 -2.5521 14.1673 26 6 7.3969 -2.3330 10.6710 27 6 4.8419 0.6264 5.8911 28 8 5.3187 1.8607 6.1913 29 6 4.1411 0.4194 4.7172 30 8 2.6214 -0.1451 2.2335 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5616 2.4679 -1.2084 34 1 1.5880 2.4585 1.2243 35 1 1.2374 -2.7412 0.8978 36 1 2.4298 -3.2076 3.2687 37 1 3.4912 -2.8988 5.0624 38 1 4.7307 -2.5414 7.1340 39 1 5.6696 -2.1452 8.6499 40 1 6.2991 -0.5037 12.2072 41 1 4.8312 -0.7572 11.1671 42 1 6.8867 -4.0035 12.8218 43 1 6.7907 -2.3424 13.4543 44 1 4.6528 -5.4939 12.8942 45 1 2.4036 -5.1903 14.2135 46 1 4.4529 -1.5261 14.4012 47 1 7.6013 -3.0865 9.9103 48 1 8.2507 -2.1446 11.3219 49 1 4.7016 2.4088 6.6952 50 1 3.9711 1.2401 4.0361 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:39 Heat of formation + Delta-G solvation = 40.241114 kcal Electronic energy + Delta-G solvation = -35275.877210 eV Core-core repulsion = 30432.319097 eV Total energy + Delta-G solvation = -4843.558113 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.79195 -42.97115 -41.77634 -40.66716 -39.06711 -38.22872 -37.88407 -35.44507 -34.42418 -34.10023 -33.11073 -31.38258 -30.60079 -30.35248 -28.96254 -27.13600 -26.99398 -24.96163 -24.22417 -23.99111 -22.58593 -22.25244 -22.13020 -21.85656 -21.44373 -20.51869 -19.75509 -19.00121 -18.63473 -18.38561 -17.76058 -17.52907 -17.36078 -16.81372 -16.67863 -16.54794 -16.14646 -16.05949 -15.86843 -15.73829 -15.47968 -15.22616 -14.94663 -14.86423 -14.69336 -14.43587 -14.30770 -14.25917 -14.06504 -13.88225 -13.82178 -13.66870 -13.65739 -13.57446 -13.03413 -12.98530 -12.81424 -12.56692 -12.09173 -11.96528 -11.87182 -11.58748 -11.19170 -10.88709 -10.88377 -10.84009 -10.68248 -10.50836 -10.19091 -10.03393 -9.42451 -9.08161 -5.02952 -0.85796 0.03913 0.59534 1.06487 1.13665 1.37196 1.40697 1.65766 1.78447 1.87615 1.89725 1.90398 2.32068 2.55564 2.94543 3.09380 3.09926 3.20721 3.27491 3.41748 3.45903 3.50967 3.58689 3.78867 3.79831 3.83520 3.84225 3.88656 3.94541 3.97217 4.08239 4.20622 4.25960 4.31251 4.41588 4.42718 4.48984 4.55587 4.58714 4.62248 4.70000 4.71777 4.77801 4.78285 4.82302 4.88875 4.92463 5.01893 5.10575 5.31922 5.32489 5.37570 5.41027 5.83855 5.89640 6.17692 6.24999 6.32125 6.62135 7.11489 7.19928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.035 4.035 3 Si 0.698 3.302 4 C -0.043 4.043 5 C -0.173 4.173 6 C -0.176 4.176 7 C 0.022 3.978 8 C 0.032 3.968 9 C -0.116 4.116 10 C -0.064 4.064 11 C -0.167 4.167 12 C 0.562 3.438 13 O -0.514 6.514 14 N -0.713 5.713 15 C 0.123 3.877 16 H 0.108 0.892 17 C -0.147 4.147 18 C -0.129 4.129 19 H 0.097 0.903 20 C 0.113 3.887 21 N -0.457 5.457 22 C -0.059 4.059 23 C -0.030 4.030 24 N -0.496 5.496 25 C 0.183 3.817 26 C -0.136 4.136 27 C 0.180 3.820 28 O -0.474 6.474 29 C -0.141 4.141 30 O -0.162 6.162 31 H 0.381 0.619 32 H 0.139 0.861 33 H -0.247 1.247 34 H -0.255 1.255 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.399 0.601 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.172 0.828 45 H 0.168 0.832 46 H 0.202 0.798 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.399 0.601 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -4.290 -1.349 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.144 4.144 3 Si 0.597 3.403 4 C -0.093 4.093 5 C -0.192 4.192 6 C -0.195 4.195 7 C -0.028 4.028 8 C 0.032 3.968 9 C -0.134 4.134 10 C -0.083 4.083 11 C -0.170 4.170 12 C 0.350 3.650 13 O -0.389 6.389 14 N -0.365 5.365 15 C 0.018 3.982 16 H 0.126 0.874 17 C -0.185 4.185 18 C -0.148 4.148 19 H 0.115 0.885 20 C -0.009 4.009 21 N -0.140 5.140 22 C -0.192 4.192 23 C -0.177 4.177 24 N -0.214 5.214 25 C -0.099 4.099 26 C -0.175 4.175 27 C 0.133 3.867 28 O -0.285 6.285 29 C -0.159 4.159 30 O -0.059 6.059 31 H 0.229 0.771 32 H 0.156 0.844 33 H -0.171 1.171 34 H -0.179 1.179 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.235 0.765 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.190 0.810 45 H 0.186 0.814 46 H 0.218 0.782 47 H 0.098 0.902 48 H 0.121 0.879 49 H 0.258 0.742 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.355 -2.438 -1.571 4.435 hybrid contribution -1.043 -1.256 0.202 1.645 sum 2.311 -3.694 -1.369 4.568 Atomic orbital electron populations 1.86670 1.16628 1.80155 1.49247 1.24364 0.84020 1.12216 0.93829 0.94417 0.91471 0.73287 0.81112 1.22950 1.00581 0.93796 0.91960 1.21589 1.03943 0.95721 0.97974 1.21914 1.01864 0.98383 0.97371 1.20312 1.03848 0.87506 0.91088 1.17759 0.95499 0.93646 0.89945 1.20701 1.00219 0.98721 0.93781 1.20790 0.95477 0.95459 0.96531 1.20451 1.04954 0.95152 0.96471 1.17968 0.79630 0.84522 0.82873 1.90856 1.49357 1.23476 1.75246 1.45572 1.57656 1.12279 1.21014 1.21762 0.94151 0.99282 0.83018 0.87383 1.23585 1.01550 0.94851 0.98552 1.23111 0.99090 0.97451 0.95171 0.88516 1.21964 0.82393 1.02876 0.93701 1.45578 1.17280 1.10840 1.40301 1.22740 0.96670 0.90829 1.08961 1.22355 0.98258 0.94957 1.02175 1.70329 1.20996 1.06353 1.23747 1.25010 0.88814 0.98150 0.97923 1.23336 0.96869 0.97529 0.99741 1.18275 0.91272 0.85755 0.91374 1.84776 1.44552 1.22700 1.76498 1.21597 0.98681 0.97555 0.98081 1.83949 1.57797 1.37749 1.26374 0.77101 0.84383 1.17143 1.17925 0.82640 0.82613 0.84323 0.84754 0.76546 0.88623 0.90670 0.88741 0.88436 0.81035 0.81433 0.78180 0.90176 0.87938 0.74210 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.13 12.88 -35.23 -0.45 -0.58 16 2 C -0.03 0.03 2.98 36.01 0.11 0.14 16 3 Si 0.70 -0.70 32.11 -169.99 -5.46 -6.16 16 4 C -0.04 -0.01 6.20 -35.52 -0.22 -0.23 16 5 C -0.17 -0.03 10.78 -39.82 -0.43 -0.46 16 6 C -0.18 0.05 10.26 -39.38 -0.40 -0.36 16 7 C 0.02 0.01 7.02 -36.54 -0.26 -0.24 16 8 C 0.03 0.00 5.87 -104.95 -0.62 -0.62 16 9 C -0.12 0.21 9.48 -39.60 -0.38 -0.16 16 10 C -0.06 0.13 9.47 -39.62 -0.38 -0.24 16 11 C -0.17 -0.08 5.89 -104.78 -0.62 -0.70 16 12 C 0.56 0.87 7.75 -12.58 -0.10 0.78 16 13 O -0.51 -2.66 14.76 -16.71 -0.25 -2.91 16 14 N -0.71 1.22 5.21 -54.13 -0.28 0.94 16 15 C 0.12 -0.28 4.29 -67.12 -0.29 -0.56 16 16 H 0.11 -0.04 7.50 -51.93 -0.39 -0.43 16 17 C -0.15 0.43 7.45 -25.78 -0.19 0.24 16 18 C -0.13 0.56 3.86 -89.67 -0.35 0.22 16 19 H 0.10 -0.36 8.14 -51.92 -0.42 -0.78 16 20 C 0.11 -0.48 5.99 -4.04 -0.02 -0.50 16 21 N -0.46 0.44 2.75 -118.58 -0.33 0.12 16 22 C -0.06 0.01 11.58 -16.56 -0.19 -0.18 16 23 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 24 N -0.50 -2.08 11.25 -14.66 -0.16 -2.24 16 25 C 0.18 0.19 12.56 -90.37 -1.14 -0.94 16 26 C -0.14 0.65 7.38 -25.92 -0.19 0.46 16 27 C 0.18 0.25 6.71 -38.75 -0.26 -0.01 16 28 O -0.47 -1.01 11.56 -40.69 -0.47 -1.48 16 29 C -0.14 -0.09 9.65 -39.06 -0.38 -0.46 16 30 O -0.16 -0.18 8.79 4.74 0.04 -0.14 16 31 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 32 H 0.14 -0.34 7.96 -51.93 -0.41 -0.75 16 33 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 34 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 35 H 0.16 -0.16 8.06 -52.48 -0.42 -0.58 16 36 H 0.16 -0.41 7.24 -52.48 -0.38 -0.79 16 37 H 0.14 -0.57 6.95 -52.49 -0.36 -0.93 16 38 H 0.13 -0.69 6.37 -52.49 -0.33 -1.03 16 39 H 0.40 -1.66 6.71 -40.82 -0.27 -1.94 16 40 H 0.10 -0.36 7.90 -51.93 -0.41 -0.77 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16 43 H 0.10 -0.51 7.85 -51.93 -0.41 -0.92 16 44 H 0.17 -0.51 8.06 -52.49 -0.42 -0.93 16 45 H 0.17 0.08 8.06 -52.48 -0.42 -0.34 16 46 H 0.20 -0.36 8.06 -52.48 -0.42 -0.79 16 47 H 0.08 -0.40 8.14 -51.92 -0.42 -0.83 16 48 H 0.10 -0.58 8.10 -51.93 -0.42 -1.00 16 49 H 0.40 -0.60 9.06 45.56 0.41 -0.19 16 50 H 0.14 0.01 7.90 -52.49 -0.41 -0.41 16 LS Contribution 427.63 15.07 6.44 6.44 Total: 0.00 -12.44 427.63 -13.00 -25.44 By element: Atomic # 1 Polarization: -9.73 SS G_CDS: -5.58 Total: -15.31 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -6.50 Total: -4.11 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -0.77 Total: -1.18 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -1.13 Total: -5.12 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.46 Total: -6.16 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -12.44 -13.00 -25.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.684 kcal (2) G-P(sol) polarization free energy of solvation -12.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds