Wall clock time and date at job start Sun Mar 7 2021 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.46927 * 2 1 4 4 C 1.50699 * 109.46672 * 120.00146 * 2 1 3 5 5 C 1.34832 * 125.65555 * 65.00320 * 4 2 1 6 6 C 1.40793 * 107.05154 * 180.02562 * 5 4 2 7 7 C 1.36108 * 106.73192 * 0.02562 * 6 5 4 8 8 C 1.47571 * 125.94396 * 179.97438 * 7 6 5 9 9 C 1.39925 * 119.95481 * 359.97438 * 8 7 6 10 10 C 1.36424 * 120.28142 * 179.97438 * 9 8 7 11 11 C 1.39878 * 120.18242 * 0.02562 * 10 9 8 12 12 C 1.47295 * 120.04543 * 180.02562 * 11 10 9 13 13 O 1.21634 * 119.99908 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00170 * 359.97438 * 12 11 10 15 15 C 1.46501 * 120.00233 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84953 * 334.66902 * 15 14 12 17 17 C 1.53778 * 113.61406 * 105.86244 * 15 14 12 18 18 C 1.54052 * 86.98507 * 89.16364 * 17 15 14 19 19 H 1.09008 * 113.61302 * 270.88374 * 18 17 15 20 20 C 1.53002 * 113.61973 * 139.98242 * 18 17 15 21 21 N 1.46494 * 109.47447 * 87.50821 * 20 18 17 22 22 C 1.36881 * 126.40143 * 89.99715 * 21 20 18 23 23 C 1.34667 * 106.81940 * 180.02562 * 22 21 20 24 24 N 1.34136 * 108.02182 * 0.02562 * 23 22 21 25 25 C 1.30500 * 109.25081 * 359.72474 * 24 23 22 26 26 C 1.53778 * 87.07587 * 25.43308 * 18 17 15 27 27 C 1.40410 * 119.90895 * 359.97438 * 11 10 9 28 28 O 1.35679 * 120.13557 * 180.02562 * 27 11 10 29 29 C 1.38270 * 119.72393 * 0.02562 * 27 11 10 30 30 O 1.34235 * 125.65154 * 245.32296 * 4 2 1 31 31 H 0.96698 * 114.00077 * 299.99800 * 1 2 3 32 32 H 1.09000 * 109.46731 * 239.99877 * 2 1 3 33 33 H 1.48492 * 110.00406 * 299.99571 * 3 2 1 34 34 H 1.48498 * 110.00003 * 61.32431 * 3 2 1 35 35 H 1.08006 * 126.47434 * 0.05185 * 5 4 2 36 36 H 1.08003 * 126.63675 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.86013 * 359.69846 * 9 8 7 38 38 H 1.07993 * 119.91352 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99671 * 0.02562 * 14 12 11 40 40 H 1.08994 * 113.62226 * 203.66624 * 17 15 14 41 41 H 1.09003 * 113.61490 * 334.57022 * 17 15 14 42 42 H 1.09003 * 109.46586 * 207.50528 * 20 18 17 43 43 H 1.09002 * 109.46907 * 327.50217 * 20 18 17 44 44 H 1.08000 * 126.58762 * 359.96474 * 22 21 20 45 45 H 1.08003 * 125.99345 * 180.02562 * 23 22 21 46 46 H 1.08007 * 125.64860 * 180.29281 * 25 24 23 47 47 H 1.09009 * 113.61280 * 220.02494 * 26 18 17 48 48 H 1.08994 * 113.61525 * 89.11877 * 26 18 17 49 49 H 0.96706 * 113.99628 * 269.97097 * 28 27 11 50 50 H 1.08002 * 120.09469 * 179.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7567 -2.0180 1.5093 6 6 2.3798 -2.2628 2.7479 7 6 2.9062 -1.0781 3.1626 8 6 3.6540 -0.8535 4.4149 9 6 3.8739 -1.9167 5.2976 10 6 4.5648 -1.7167 6.4568 11 6 5.0580 -0.4461 6.7713 12 6 5.8040 -0.2336 8.0234 13 8 6.2329 0.8715 8.2958 14 7 6.0114 -1.2637 8.8674 15 6 6.7538 -1.0526 10.1125 16 1 7.4399 -0.2074 10.0581 17 6 5.8638 -1.0438 11.3665 18 6 6.0817 -2.5674 11.4325 19 1 5.3454 -3.1387 10.8670 20 6 6.2824 -3.0969 12.8539 21 7 4.9793 -3.3996 13.4508 22 6 4.3162 -4.5956 13.3904 23 6 3.1629 -4.4364 14.0673 24 7 3.1226 -3.1773 14.5281 25 6 4.2098 -2.5521 14.1673 26 6 7.3969 -2.3330 10.6710 27 6 4.8419 0.6264 5.8911 28 8 5.3187 1.8607 6.1913 29 6 4.1411 0.4194 4.7172 30 8 2.6214 -0.1451 2.2335 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5616 2.4679 -1.2084 34 1 1.5880 2.4585 1.2243 35 1 1.2374 -2.7412 0.8978 36 1 2.4298 -3.2076 3.2687 37 1 3.4912 -2.8988 5.0624 38 1 4.7307 -2.5414 7.1340 39 1 5.6696 -2.1452 8.6499 40 1 6.2991 -0.5037 12.2072 41 1 4.8312 -0.7572 11.1671 42 1 6.8867 -4.0035 12.8218 43 1 6.7907 -2.3424 13.4543 44 1 4.6528 -5.4939 12.8942 45 1 2.4036 -5.1903 14.2135 46 1 4.4529 -1.5261 14.4012 47 1 7.6013 -3.0865 9.9103 48 1 8.2507 -2.1446 11.3219 49 1 4.7016 2.4088 6.6952 50 1 3.9711 1.2401 4.0361 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:38 Heat of formation + Delta-G solvation = 40.216144 kcal Electronic energy + Delta-G solvation = -35275.878293 eV Core-core repulsion = 30432.319097 eV Total energy + Delta-G solvation = -4843.559196 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.76291 -42.92505 -41.74426 -40.53080 -39.06264 -38.21472 -37.89392 -35.39322 -34.39385 -34.06695 -33.04354 -31.34029 -30.55366 -30.33195 -28.79679 -27.08062 -26.70183 -24.87868 -24.14051 -23.87048 -22.53599 -22.23725 -22.11208 -21.77752 -21.40629 -20.35278 -19.70872 -18.94600 -18.62574 -18.25888 -17.74511 -17.51080 -17.29392 -16.68070 -16.67903 -16.40404 -16.13349 -16.04902 -15.83098 -15.60571 -15.41337 -15.15282 -14.88615 -14.76975 -14.58765 -14.44746 -14.27855 -14.20176 -13.99531 -13.81325 -13.69423 -13.61690 -13.48249 -13.39634 -12.97378 -12.77829 -12.73573 -12.32407 -12.20553 -11.94721 -11.70690 -11.32724 -11.15608 -10.98502 -10.88025 -10.86330 -10.65196 -10.45837 -10.11539 -9.98472 -9.41733 -9.04082 -4.99940 -0.82612 0.11198 0.61770 1.11176 1.18577 1.40875 1.43221 1.67652 1.86443 1.88562 1.95431 1.99401 2.25695 2.60364 2.98766 3.19708 3.33591 3.39162 3.49718 3.57019 3.61723 3.73928 3.81833 3.84697 3.91005 3.96538 3.98278 4.10766 4.14839 4.18778 4.28467 4.34276 4.41402 4.53039 4.61341 4.63680 4.66935 4.70638 4.76913 4.78204 4.81510 4.83705 4.88829 4.99107 5.02516 5.03683 5.07867 5.16008 5.19055 5.38427 5.41215 5.49700 5.56600 5.86306 5.94090 6.29973 6.34198 6.42354 6.65559 7.12841 7.19391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.033 4.033 3 Si 0.761 3.239 4 C -0.051 4.051 5 C -0.181 4.181 6 C -0.171 4.171 7 C 0.004 3.996 8 C 0.026 3.974 9 C -0.110 4.110 10 C -0.051 4.051 11 C -0.180 4.180 12 C 0.558 3.442 13 O -0.562 6.562 14 N -0.697 5.697 15 C 0.109 3.891 16 H 0.084 0.916 17 C -0.147 4.147 18 C -0.114 4.114 19 H 0.096 0.904 20 C 0.110 3.890 21 N -0.451 5.451 22 C -0.046 4.046 23 C -0.068 4.068 24 N -0.548 5.548 25 C 0.173 3.827 26 C -0.117 4.117 27 C 0.160 3.840 28 O -0.495 6.495 29 C -0.153 4.153 30 O -0.177 6.177 31 H 0.390 0.610 32 H 0.158 0.842 33 H -0.280 1.280 34 H -0.296 1.296 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.413 0.587 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.203 0.797 45 H 0.171 0.829 46 H 0.220 0.780 47 H 0.092 0.908 48 H 0.117 0.883 49 H 0.408 0.592 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -7.398 -1.442 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.142 4.142 3 Si 0.665 3.335 4 C -0.101 4.101 5 C -0.201 4.201 6 C -0.190 4.190 7 C -0.045 4.045 8 C 0.026 3.974 9 C -0.128 4.128 10 C -0.070 4.070 11 C -0.184 4.184 12 C 0.346 3.654 13 O -0.441 6.441 14 N -0.349 5.349 15 C 0.004 3.996 16 H 0.102 0.898 17 C -0.186 4.186 18 C -0.134 4.134 19 H 0.114 0.886 20 C -0.011 4.011 21 N -0.132 5.132 22 C -0.179 4.179 23 C -0.215 4.215 24 N -0.267 5.267 25 C -0.110 4.110 26 C -0.156 4.156 27 C 0.114 3.886 28 O -0.308 6.308 29 C -0.172 4.172 30 O -0.074 6.074 31 H 0.239 0.761 32 H 0.175 0.825 33 H -0.207 1.207 34 H -0.222 1.222 35 H 0.185 0.815 36 H 0.200 0.800 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.251 0.749 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.220 0.780 45 H 0.188 0.812 46 H 0.236 0.764 47 H 0.110 0.890 48 H 0.135 0.865 49 H 0.268 0.732 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.339 -5.593 -1.660 7.271 hybrid contribution -1.380 -0.246 0.231 1.421 sum 2.958 -5.840 -1.429 6.701 Atomic orbital electron populations 1.86641 1.17208 1.80368 1.50034 1.24460 0.83538 1.11945 0.94285 0.93626 0.90605 0.72188 0.77038 1.23165 1.00646 0.94207 0.92050 1.21845 1.04012 0.95780 0.98413 1.22248 1.00726 0.98925 0.97097 1.20572 1.04655 0.87927 0.91357 1.17954 0.95366 0.93861 0.90258 1.21053 0.99334 0.99358 0.93023 1.21143 0.93874 0.95121 0.96812 1.20530 1.05655 0.96120 0.96113 1.18218 0.79276 0.84441 0.83438 1.90827 1.51541 1.25380 1.76366 1.45464 1.56738 1.12173 1.20561 1.21895 0.94431 1.00292 0.82990 0.89771 1.23596 1.00057 0.96490 0.98437 1.22972 0.99241 0.95870 0.95268 0.88612 1.22235 0.81045 1.04359 0.93501 1.45746 1.17911 1.10158 1.39421 1.23159 0.95610 0.91755 1.07404 1.22636 0.99970 0.94879 1.04011 1.70246 1.23072 1.07704 1.25668 1.25354 0.88579 0.99020 0.98012 1.23279 0.96855 0.95772 0.99673 1.18490 0.92205 0.85769 0.92129 1.84730 1.45593 1.23573 1.76857 1.21575 0.99459 0.98148 0.97985 1.83936 1.58210 1.38462 1.26840 0.76056 0.82507 1.20671 1.22228 0.81510 0.80049 0.81294 0.81220 0.74875 0.87825 0.92853 0.86688 0.87052 0.78023 0.81173 0.76411 0.88976 0.86471 0.73231 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.29 12.88 -148.98 -1.92 -2.21 16 2 C -0.03 0.06 2.98 71.24 0.21 0.27 16 3 Si 0.76 -0.57 32.11 68.60 2.20 1.63 16 4 C -0.05 -0.03 6.20 24.90 0.15 0.13 16 5 C -0.18 0.13 10.78 22.11 0.24 0.37 16 6 C -0.17 0.34 10.26 22.40 0.23 0.57 16 7 C 0.00 0.00 7.02 24.24 0.17 0.18 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.11 0.60 9.48 22.25 0.21 0.81 16 10 C -0.05 0.29 9.47 22.24 0.21 0.50 16 11 C -0.18 -0.29 5.89 -19.97 -0.12 -0.41 16 12 C 0.56 2.34 7.75 86.63 0.67 3.01 16 13 O -0.56 -7.24 14.76 16.85 0.25 -6.99 16 14 N -0.70 2.64 5.21 -443.42 -2.31 0.33 16 15 C 0.11 -0.51 4.29 45.52 0.20 -0.32 16 16 H 0.08 0.05 7.50 -2.39 -0.02 0.03 16 17 C -0.15 0.92 7.45 31.21 0.23 1.15 16 18 C -0.11 1.24 3.86 -10.18 -0.04 1.20 16 19 H 0.10 -0.95 8.14 -2.38 -0.02 -0.97 16 20 C 0.11 -1.21 5.99 86.38 0.52 -0.69 16 21 N -0.45 1.53 2.75 -529.06 -1.46 0.07 16 22 C -0.05 0.08 11.58 83.09 0.96 1.04 16 23 C -0.07 -0.33 11.87 83.52 0.99 0.66 16 24 N -0.55 -5.12 11.25 -200.30 -2.25 -7.38 16 25 C 0.17 0.36 12.56 180.26 2.26 2.62 16 26 C -0.12 1.40 7.38 31.12 0.23 1.63 16 27 C 0.16 0.77 6.71 22.81 0.15 0.92 16 28 O -0.49 -3.64 11.56 -68.97 -0.80 -4.44 16 29 C -0.15 -0.46 9.65 22.61 0.22 -0.24 16 30 O -0.18 -0.53 8.79 -5.97 -0.05 -0.58 16 31 H 0.39 -1.66 8.70 -74.06 -0.64 -2.31 16 32 H 0.16 -0.90 7.96 -2.39 -0.02 -0.92 16 33 H -0.28 -1.29 7.11 99.48 0.71 -0.58 16 34 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 35 H 0.17 -0.58 8.06 -2.91 -0.02 -0.61 16 36 H 0.18 -1.49 7.24 -2.91 -0.02 -1.51 16 37 H 0.17 -1.98 6.95 -2.91 -0.02 -2.00 16 38 H 0.17 -2.31 6.37 -2.91 -0.02 -2.33 16 39 H 0.41 -4.20 6.71 -92.71 -0.62 -4.82 16 40 H 0.10 -0.82 7.90 -2.39 -0.02 -0.84 16 41 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.11 -1.64 8.14 -2.39 -0.02 -1.66 16 43 H 0.11 -1.47 7.85 -2.39 -0.02 -1.49 16 44 H 0.20 -1.77 8.06 -2.91 -0.02 -1.79 16 45 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.22 -0.79 8.06 -2.91 -0.02 -0.81 16 47 H 0.09 -1.23 8.14 -2.38 -0.02 -1.25 16 48 H 0.12 -1.66 8.10 -2.39 -0.02 -1.68 16 49 H 0.41 0.24 9.06 -74.05 -0.67 -0.43 16 50 H 0.14 0.42 7.90 -2.91 -0.02 0.39 16 Total: 0.00 -33.00 427.63 0.38 -32.63 By element: Atomic # 1 Polarization: -25.46 SS G_CDS: -0.87 Total: -26.34 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 7.59 Total: 13.28 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -6.02 Total: -6.98 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -2.52 Total: -14.22 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.20 Total: 1.63 kcal Total: -33.00 0.38 -32.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.841 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds