Wall clock time and date at job start Sun Mar 7 2021 04:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39286 * 121.03219 * 2 1 4 4 C 1.46497 * 134.20184 * 359.94865 * 3 2 1 5 5 C 1.50700 * 126.59927 * 0.02562 * 4 3 2 6 6 O 1.42894 * 109.46924 * 285.00038 * 5 4 3 7 7 Si 1.86301 * 109.47095 * 164.99945 * 5 4 3 8 8 C 1.34178 * 106.80229 * 180.02562 * 4 3 2 9 9 N 1.36953 * 109.95320 * 0.02562 * 8 4 3 10 10 C 1.37161 * 110.10968 * 359.97438 * 9 8 4 11 11 N 1.32817 * 132.95863 * 179.97438 * 10 9 8 12 12 C 1.31310 * 121.88884 * 179.71346 * 11 10 9 13 13 C 1.39750 * 121.03212 * 179.97438 * 2 1 3 14 14 C 1.47670 * 120.45124 * 0.02562 * 13 2 1 15 15 O 1.21573 * 119.99755 * 354.24543 * 14 13 2 16 16 N 1.34773 * 120.00151 * 174.24171 * 14 13 2 17 17 C 1.46500 * 120.00251 * 179.97438 * 16 14 13 18 18 H 1.09000 * 112.84750 * 23.81156 * 17 16 14 19 19 C 1.53785 * 113.61301 * 155.00171 * 17 16 14 20 20 C 1.53780 * 87.07950 * 89.20290 * 19 17 16 21 21 H 1.09000 * 113.61510 * 270.79522 * 20 19 17 22 22 C 1.53006 * 113.61334 * 139.98103 * 20 19 17 23 23 N 1.46492 * 109.47120 * 176.52906 * 22 20 19 24 24 C 1.36882 * 126.39766 * 270.00101 * 23 22 20 25 25 C 1.34674 * 106.81901 * 180.02562 * 24 23 22 26 26 N 1.34126 * 108.01769 * 359.77927 * 25 24 23 27 27 C 1.30500 * 109.25725 * 0.36860 * 26 25 24 28 28 C 1.53777 * 87.17533 * 25.38829 * 20 19 17 29 29 H 1.08995 * 109.47363 * 263.72843 * 1 2 3 30 30 H 1.09004 * 109.47039 * 23.73064 * 1 2 3 31 31 H 1.08999 * 109.47143 * 143.72815 * 1 2 3 32 32 H 1.09001 * 109.47256 * 45.00046 * 5 4 3 33 33 H 0.96699 * 113.99770 * 179.97438 * 6 5 4 34 34 H 1.48495 * 109.99815 * 59.99761 * 7 5 4 35 35 H 1.48496 * 110.00180 * 181.32006 * 7 5 4 36 36 H 1.07998 * 125.02648 * 179.97438 * 8 4 3 37 37 H 0.96995 * 124.94371 * 180.02562 * 9 8 4 38 38 H 1.08003 * 119.31469 * 180.30681 * 12 11 10 39 39 H 0.97009 * 119.99747 * 0.02562 * 16 14 13 40 40 H 1.09001 * 113.61528 * 334.65446 * 19 17 16 41 41 H 1.09001 * 113.69076 * 203.76503 * 19 17 16 42 42 H 1.08996 * 109.47120 * 56.52728 * 22 20 19 43 43 H 1.08996 * 109.46600 * 296.52938 * 22 20 19 44 44 H 1.08005 * 126.59346 * 0.05626 * 24 23 22 45 45 H 1.07994 * 125.98817 * 180.02562 * 25 24 23 46 46 H 1.07997 * 125.64578 * 179.89270 * 27 26 25 47 47 H 1.09006 * 113.61446 * 89.15199 * 28 20 19 48 48 H 1.08994 * 113.61877 * 220.06126 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1935 0.0000 4 6 1.8517 2.6101 -0.0009 5 6 0.4528 3.1706 -0.0017 6 8 -0.1186 3.0233 -1.3032 7 14 0.5072 4.9767 0.4519 8 6 2.9949 3.3125 -0.0010 9 7 4.0670 2.4604 -0.0007 10 6 3.6348 1.1587 0.0001 11 7 4.2720 -0.0066 0.0002 12 6 3.6267 -1.1502 0.0066 13 6 2.2275 -1.1975 0.0005 14 6 1.5225 -2.4950 0.0005 15 8 0.3118 -2.5290 0.1057 16 7 2.2212 -3.6416 -0.1160 17 6 1.5218 -4.9289 -0.1155 18 1 0.4806 -4.8450 -0.4268 19 6 2.2918 -6.0485 -0.8356 20 6 2.9584 -6.3521 0.5166 21 1 3.8730 -5.7849 0.6896 22 6 3.1248 -7.8472 0.7959 23 7 3.8397 -8.0310 2.0613 24 6 5.1957 -8.1272 2.2215 25 6 5.4219 -8.2892 3.5392 26 7 4.2366 -8.2870 4.1669 27 6 3.2841 -8.1376 3.2875 28 6 1.7162 -5.7358 1.1812 29 1 -0.3634 -0.1123 1.0214 30 1 -0.3633 0.9408 -0.4136 31 1 -0.3633 -0.8285 -0.6080 32 1 -0.1550 2.6316 0.7250 33 1 -1.0209 3.3630 -1.3773 34 1 1.3329 5.7226 -0.5314 35 1 -0.8690 5.5336 0.4857 36 1 3.0601 4.3906 -0.0020 37 1 4.9967 2.7371 -0.0003 38 1 4.1869 -2.0735 0.0114 39 1 3.1873 -3.6145 -0.1996 40 1 2.9861 -5.6839 -1.5926 41 1 1.6544 -6.8547 -1.1990 42 1 3.6932 -8.3068 -0.0126 43 1 2.1430 -8.3159 0.8619 44 1 5.9411 -8.0814 1.4412 45 1 6.3885 -8.3976 4.0086 46 1 2.2269 -8.1007 3.5048 47 1 0.9200 -6.4556 1.3709 48 1 1.9464 -5.1190 2.0499 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:43 Heat of formation + Delta-G solvation = 107.602705 kcal Electronic energy + Delta-G solvation = -32470.294877 eV Core-core repulsion = 28108.858865 eV Total energy + Delta-G solvation = -4361.436011 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93200 -42.86938 -41.35999 -39.80350 -38.63075 -37.85947 -35.56507 -34.99619 -33.98385 -32.07632 -31.08738 -30.33867 -29.05948 -28.58051 -26.69130 -26.48607 -25.02316 -24.30254 -23.64672 -22.24540 -22.07179 -21.76559 -20.42837 -20.29856 -19.29010 -18.81432 -18.50090 -18.26419 -17.60222 -17.21829 -16.80451 -16.47619 -16.40449 -15.94101 -15.78848 -15.53914 -15.29173 -15.15715 -14.96293 -14.92856 -14.72016 -14.61531 -14.24619 -14.11308 -14.09287 -13.77471 -13.68021 -13.50000 -13.37670 -13.31025 -12.98157 -12.75821 -12.68232 -12.28912 -12.00589 -11.67720 -11.32010 -11.21197 -11.14164 -10.87519 -10.55555 -10.44041 -10.28848 -10.12480 -9.65425 -9.41253 -9.16155 -4.86266 -0.38276 -0.11701 1.19150 1.31497 1.37812 1.59882 1.68632 1.74882 1.96239 1.98886 2.01313 2.26323 2.71438 3.26572 3.34484 3.42797 3.51683 3.55926 3.64667 3.65934 3.76279 3.77420 3.83733 3.91642 4.10254 4.11640 4.14667 4.15785 4.28146 4.30307 4.42254 4.55289 4.56276 4.63948 4.66888 4.72354 4.74402 4.79534 4.82063 4.86943 4.94628 5.03621 5.05119 5.13076 5.19800 5.23594 5.37318 5.39322 5.59647 5.69785 5.86543 6.18241 6.35165 6.42355 6.64374 6.78922 7.12738 7.19896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.064 3.936 3 C -0.168 4.168 4 C -0.160 4.160 5 C -0.061 4.061 6 O -0.557 6.557 7 Si 0.775 3.225 8 C 0.088 3.912 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.180 3.820 13 C -0.243 4.243 14 C 0.574 3.426 15 O -0.562 6.562 16 N -0.698 5.698 17 C 0.112 3.888 18 H 0.090 0.910 19 C -0.119 4.119 20 C -0.117 4.117 21 H 0.093 0.907 22 C 0.110 3.890 23 N -0.451 5.451 24 C -0.047 4.047 25 C -0.068 4.068 26 N -0.547 5.547 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.392 0.608 34 H -0.277 1.277 35 H -0.290 1.290 36 H 0.217 0.783 37 H 0.439 0.561 38 H 0.192 0.808 39 H 0.411 0.589 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.201 0.799 45 H 0.171 0.829 46 H 0.221 0.779 47 H 0.105 0.895 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 2.120 -3.157 4.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.055 3.945 3 C -0.175 4.175 4 C -0.167 4.167 5 C -0.168 4.168 6 O -0.367 6.367 7 Si 0.678 3.322 8 C -0.039 4.039 9 N -0.167 5.167 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.011 3.989 13 C -0.250 4.250 14 C 0.362 3.638 15 O -0.443 6.443 16 N -0.350 5.350 17 C 0.006 3.994 18 H 0.108 0.892 19 C -0.157 4.157 20 C -0.136 4.136 21 H 0.112 0.888 22 C -0.011 4.011 23 N -0.132 5.132 24 C -0.181 4.181 25 C -0.215 4.215 26 N -0.266 5.266 27 C -0.109 4.109 28 C -0.185 4.185 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.242 0.758 34 H -0.203 1.203 35 H -0.217 1.217 36 H 0.233 0.767 37 H 0.280 0.720 38 H 0.209 0.791 39 H 0.249 0.751 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.218 0.782 45 H 0.188 0.812 46 H 0.237 0.763 47 H 0.124 0.876 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.132 2.723 -2.759 4.424 hybrid contribution -0.742 -0.155 -1.413 1.603 sum 1.390 2.569 -4.171 5.092 Atomic orbital electron populations 1.21094 0.89174 1.04026 1.03333 1.20077 0.97295 0.89977 0.87118 1.19775 0.93378 0.94411 1.09956 1.19724 0.94513 0.90008 1.12418 1.24474 0.91518 1.13366 0.87487 1.86591 1.34941 1.84413 1.30780 0.94101 0.80461 0.70486 0.87176 1.22246 0.84156 0.97121 1.00352 1.41574 1.10530 1.01763 1.62784 1.18753 0.89505 0.86808 0.99416 1.66502 1.40860 0.96438 1.19111 1.22933 0.89775 0.95203 0.90985 1.20511 0.95396 0.93477 1.15625 1.17939 0.86453 0.83898 0.75485 1.90734 1.14942 1.87482 1.51095 1.45456 1.10962 1.04608 1.73961 1.21934 0.97561 0.82043 0.97820 0.89187 1.23286 0.99314 0.97458 0.95648 1.22932 0.98385 0.94791 0.97481 0.88847 1.22230 0.99065 0.96813 0.82982 1.45744 1.06511 1.52108 1.08881 1.23148 0.85588 1.09783 0.99546 1.22627 0.97125 1.09521 0.92208 1.70238 1.00317 1.21406 1.34684 1.25371 1.00641 1.04882 0.79965 1.23573 0.98519 0.99499 0.96909 0.90202 0.90000 0.89974 0.90177 0.75771 1.20323 1.21651 0.76662 0.71990 0.79135 0.75146 0.89298 0.86348 0.86852 0.86888 0.78186 0.81197 0.76269 0.87628 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.46 71.24 0.60 -0.30 16 2 C 0.06 0.53 5.98 -19.25 -0.12 0.42 16 3 C -0.17 -1.22 6.16 -20.19 -0.12 -1.34 16 4 C -0.16 -0.42 5.61 -18.64 -0.10 -0.52 16 5 C -0.06 0.03 1.87 71.24 0.13 0.16 16 6 O -0.56 -1.29 11.64 -148.98 -1.73 -3.02 16 7 Si 0.78 -3.74 30.80 68.60 2.11 -1.63 16 8 C 0.09 -0.21 10.44 82.97 0.87 0.65 16 9 N -0.56 0.50 6.04 -192.25 -1.16 -0.66 16 10 C 0.29 1.69 8.42 134.02 1.13 2.82 16 11 N -0.52 -3.07 10.37 -191.75 -1.99 -5.05 16 12 C 0.18 0.46 10.67 85.20 0.91 1.37 16 13 C -0.24 -1.41 5.89 -19.99 -0.12 -1.53 16 14 C 0.57 3.18 7.72 86.74 0.67 3.85 16 15 O -0.56 -6.74 13.09 -3.94 -0.05 -6.79 16 16 N -0.70 1.48 5.22 -442.79 -2.31 -0.83 16 17 C 0.11 -0.45 4.33 45.58 0.20 -0.25 16 18 H 0.09 0.02 7.46 -2.39 -0.02 0.00 16 19 C -0.12 1.27 7.39 31.12 0.23 1.50 16 20 C -0.12 1.11 3.84 -10.27 -0.04 1.07 16 21 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 22 C 0.11 -1.09 5.97 86.38 0.52 -0.58 16 23 N -0.45 1.01 2.75 -529.08 -1.46 -0.44 16 24 C -0.05 0.01 11.58 83.09 0.96 0.98 16 25 C -0.07 -0.42 11.87 83.52 0.99 0.58 16 26 N -0.55 -5.63 11.25 -200.31 -2.25 -7.88 16 27 C 0.17 0.51 12.56 180.26 2.26 2.77 16 28 C -0.15 0.80 7.44 31.18 0.23 1.04 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.49 4.79 -2.38 -0.01 0.48 16 31 H 0.08 0.88 5.95 -2.39 -0.01 0.87 16 32 H 0.08 -0.15 7.13 -2.39 -0.02 -0.16 16 33 H 0.39 -2.16 8.74 -74.06 -0.65 -2.80 16 34 H -0.28 0.21 7.04 99.48 0.70 0.91 16 35 H -0.29 -0.13 7.11 99.48 0.71 0.58 16 36 H 0.22 -2.12 6.31 -2.91 -0.02 -2.14 16 37 H 0.44 -2.94 8.96 -92.71 -0.83 -3.77 16 38 H 0.19 -1.08 6.43 -2.91 -0.02 -1.10 16 39 H 0.41 -3.03 6.78 -92.70 -0.63 -3.66 16 40 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 42 H 0.11 -1.47 8.14 -2.39 -0.02 -1.49 16 43 H 0.11 -1.42 7.87 -2.39 -0.02 -1.44 16 44 H 0.20 -1.42 8.06 -2.91 -0.02 -1.44 16 45 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.22 -0.67 8.06 -2.91 -0.02 -0.69 16 47 H 0.11 -0.81 7.92 -2.38 -0.02 -0.83 16 48 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: 0.00 -32.05 392.83 -0.66 -32.71 By element: Atomic # 1 Polarization: -18.05 SS G_CDS: -1.02 Total: -19.07 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 9.20 Total: 12.67 kcal Atomic # 7 Polarization: -5.70 SS G_CDS: -9.17 Total: -14.87 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.79 Total: -9.81 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.11 Total: -1.63 kcal Total: -32.05 -0.66 -32.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.311 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds