Wall clock time and date at job start Sun Mar 7 2021 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.46918 * 2 1 4 4 C 1.50694 * 109.47012 * 120.00075 * 2 1 3 5 5 C 1.38905 * 119.67681 * 244.99720 * 4 2 1 6 6 C 1.36476 * 120.61621 * 179.97438 * 5 4 2 7 7 C 1.40062 * 119.82684 * 0.02562 * 6 5 4 8 8 C 1.41594 * 133.37691 * 180.32199 * 7 6 5 9 9 C 1.35864 * 107.72471 * 180.02562 * 8 7 6 10 10 C 1.47059 * 125.42420 * 179.88080 * 9 8 7 11 11 O 1.21650 * 120.00103 * 359.69520 * 10 9 8 12 12 N 1.34783 * 120.00074 * 179.69421 * 10 9 8 13 13 C 1.46504 * 119.99904 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.90886 * 336.25051 * 13 12 10 15 15 C 1.53783 * 113.61068 * 107.50509 * 13 12 10 16 16 C 1.53781 * 87.07946 * 89.11669 * 15 13 12 17 17 H 1.09006 * 113.68810 * 270.87229 * 16 15 13 18 18 C 1.52998 * 113.61609 * 139.98322 * 16 15 13 19 19 N 1.46494 * 109.47430 * 87.49812 * 18 16 15 20 20 C 1.36888 * 126.39835 * 269.97662 * 19 18 16 21 21 C 1.34666 * 106.81628 * 179.97438 * 20 19 18 22 22 N 1.34121 * 108.02399 * 0.02562 * 21 20 19 23 23 C 1.30504 * 109.25569 * 359.97438 * 22 21 20 24 24 C 1.53776 * 113.61093 * 205.00090 * 13 12 10 25 25 N 1.38147 * 109.14799 * 359.62058 * 9 8 7 26 26 C 1.37484 * 108.79183 * 0.23732 * 25 9 8 27 27 C 1.37707 * 119.67684 * 64.99787 * 4 2 1 28 28 H 0.96705 * 113.99706 * 59.99509 * 1 2 3 29 29 H 1.08996 * 109.47102 * 240.00236 * 2 1 3 30 30 H 1.48500 * 110.00248 * 298.67847 * 3 2 1 31 31 H 1.48497 * 109.99732 * 60.00418 * 3 2 1 32 32 H 1.08000 * 119.68962 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.08173 * 180.02562 * 6 5 4 34 34 H 1.07998 * 126.14008 * 359.94697 * 8 7 6 35 35 H 0.96992 * 119.99951 * 0.02562 * 12 10 9 36 36 H 1.08998 * 113.61735 * 334.56380 * 15 13 12 37 37 H 1.09000 * 113.60996 * 203.65746 * 15 13 12 38 38 H 1.08998 * 109.46662 * 327.49405 * 18 16 15 39 39 H 1.09002 * 109.47089 * 207.50286 * 18 16 15 40 40 H 1.08000 * 126.58845 * 359.97438 * 20 19 18 41 41 H 1.08001 * 125.98583 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.64666 * 180.02562 * 23 22 21 43 43 H 1.09005 * 113.61364 * 156.33832 * 24 13 12 44 44 H 1.09001 * 113.61750 * 25.43710 * 24 13 12 45 45 H 0.97002 * 125.60570 * 180.22201 * 25 9 8 46 46 H 1.07999 * 120.09647 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6414 -0.0024 2.1916 6 6 3.1048 -0.6264 3.3134 7 6 2.8640 -1.9935 3.4999 8 6 3.1960 -2.9080 4.5287 9 6 2.7007 -4.1234 4.1775 10 6 2.8267 -5.3563 4.9691 11 8 3.4192 -5.3392 6.0314 12 7 2.2857 -6.5053 4.5176 13 6 2.4118 -7.7337 5.3060 14 1 3.2652 -7.7171 5.9839 15 6 1.0997 -8.1718 5.9778 16 6 0.7985 -8.9632 4.6942 17 1 0.2635 -8.3866 3.9395 18 6 0.1680 -10.3331 4.9524 19 7 -1.2876 -10.1924 5.0390 20 6 -2.0139 -9.9472 6.1731 21 6 -3.3076 -9.8932 5.8031 22 7 -3.3697 -10.1003 4.4794 23 6 -2.1634 -10.2801 4.0149 24 6 2.3181 -9.0177 4.4649 25 7 2.0547 -4.0152 2.9611 26 6 2.1432 -2.7138 2.5269 27 6 1.6818 -2.0551 1.3909 28 1 -0.3933 0.4418 -0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5879 2.4587 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.8280 1.0519 2.0502 33 1 3.6556 -0.0675 4.0554 34 1 3.7456 -2.6805 5.4301 35 1 1.8137 -6.5191 3.6704 36 1 0.4058 -7.3506 6.1575 37 1 1.2475 -8.8021 6.8547 38 1 0.5503 -10.7381 5.8894 39 1 0.4198 -11.0089 4.1351 40 1 -1.6243 -9.8213 7.1724 41 1 -4.1479 -9.7144 6.4576 42 1 -1.9080 -10.4677 2.9824 43 1 2.7989 -9.8792 4.9283 44 1 2.6078 -8.8795 3.4232 45 1 1.6117 -4.7386 2.4906 46 1 1.1284 -2.5969 0.6381 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:54 Heat of formation + Delta-G solvation = 94.562374 kcal Electronic energy + Delta-G solvation = -29541.830622 eV Core-core repulsion = 25400.792669 eV Total energy + Delta-G solvation = -4141.037953 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.00300 -42.71060 -41.31131 -39.66500 -38.80987 -37.09942 -35.55421 -34.06114 -33.30085 -31.21029 -30.45291 -30.41993 -29.05762 -27.08936 -26.97488 -24.93705 -23.96782 -23.18153 -22.24825 -21.95431 -21.89662 -21.29490 -20.62130 -19.65459 -18.59534 -18.47196 -18.01900 -17.36068 -17.09764 -16.74658 -16.47260 -16.28104 -16.12052 -15.66478 -15.34694 -15.13735 -15.02656 -14.97367 -14.86907 -14.78055 -14.59874 -14.28411 -14.24792 -14.00112 -13.87668 -13.77338 -13.50988 -13.08437 -12.74061 -12.62389 -12.34291 -12.11503 -11.97860 -11.67081 -11.65605 -11.34534 -10.93707 -10.86893 -10.54688 -10.51623 -10.36151 -9.43932 -9.32446 -8.82778 -4.96648 -0.35408 0.53142 0.96766 1.11808 1.25424 1.58652 1.68832 1.75934 1.81887 1.95568 2.19312 2.30027 2.72787 3.03817 3.13513 3.31786 3.36316 3.44234 3.52389 3.59338 3.75521 3.80475 3.82654 3.88431 3.97356 4.01601 4.16064 4.16650 4.28000 4.34816 4.36863 4.37009 4.42956 4.52157 4.52807 4.59359 4.65401 4.72549 4.79254 4.80750 4.89148 4.95769 5.20802 5.30170 5.35313 5.39729 5.55040 5.60257 5.82439 5.95326 6.12517 6.22733 6.28463 6.39489 6.90193 7.17505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.077 4.077 3 Si 0.688 3.312 4 C -0.039 4.039 5 C -0.143 4.143 6 C -0.050 4.050 7 C -0.117 4.117 8 C -0.096 4.096 9 C 0.009 3.991 10 C 0.590 3.410 11 O -0.514 6.514 12 N -0.713 5.713 13 C 0.122 3.878 14 H 0.112 0.888 15 C -0.145 4.145 16 C -0.130 4.130 17 H 0.096 0.904 18 C 0.114 3.886 19 N -0.458 5.458 20 C -0.053 4.053 21 C -0.031 4.031 22 N -0.495 5.495 23 C 0.177 3.823 24 C -0.136 4.136 25 N -0.579 5.579 26 C 0.117 3.883 27 C -0.104 4.104 28 H 0.380 0.620 29 H 0.077 0.923 30 H -0.262 1.262 31 H -0.254 1.254 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.202 0.798 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.416 0.584 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -1.637 -3.538 6.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.041 4.041 5 C -0.162 4.162 6 C -0.069 4.069 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.099 4.099 10 C 0.377 3.623 11 O -0.388 6.388 12 N -0.364 5.364 13 C 0.017 3.983 14 H 0.130 0.870 15 C -0.184 4.184 16 C -0.149 4.149 17 H 0.114 0.886 18 C -0.009 4.009 19 N -0.141 5.141 20 C -0.186 4.186 21 C -0.179 4.179 22 N -0.213 5.213 23 C -0.105 4.105 24 C -0.174 4.174 25 N -0.184 5.184 26 C 0.007 3.993 27 C -0.125 4.125 28 H 0.228 0.772 29 H 0.095 0.905 30 H -0.188 1.188 31 H -0.179 1.179 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.177 0.823 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.219 0.781 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.254 0.746 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.421 -1.307 -2.674 5.330 hybrid contribution -0.989 -0.611 -0.785 1.403 sum 3.432 -1.918 -3.459 5.236 Atomic orbital electron populations 1.86604 1.17733 1.80197 1.49812 1.24827 0.84530 1.11212 0.98064 0.94885 0.91643 0.74353 0.80158 1.18923 0.97599 0.92637 0.94963 1.20481 1.01390 0.99718 0.94614 1.20358 0.97655 0.91909 0.96935 1.18218 1.03775 0.94404 0.95767 1.20983 1.01789 0.89825 0.99674 1.20015 1.05273 0.95848 0.88801 1.17183 0.78584 0.81704 0.84879 1.90886 1.41657 1.84725 1.21557 1.45535 1.57759 1.08576 1.24540 1.21822 0.99492 0.82925 0.94085 0.87023 1.23527 0.97621 1.00347 0.96913 1.23073 0.96204 0.95991 0.99640 0.88586 1.21952 0.76645 0.97676 1.04634 1.45572 1.07626 1.52751 1.08110 1.22746 0.92834 1.10830 0.92190 1.22358 0.95833 1.07360 0.92305 1.70315 1.21948 1.18617 1.10387 1.25015 0.84451 1.05911 0.95102 1.23347 0.94619 0.97968 1.01492 1.41859 1.49016 1.09003 1.18523 1.18269 1.00603 0.83902 0.96494 1.19834 1.02501 0.94020 0.96124 0.77207 0.90545 1.18778 1.17852 0.85234 0.84863 0.82322 0.76970 0.90647 0.88526 0.88597 0.88496 0.81043 0.81402 0.78129 0.87786 0.90155 0.74606 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.47 12.80 -35.23 -0.45 -0.92 16 2 C -0.08 0.04 2.78 36.00 0.10 0.14 16 3 Si 0.69 -0.82 29.82 -169.99 -5.07 -5.89 16 4 C -0.04 -0.04 5.39 -104.57 -0.56 -0.60 16 5 C -0.14 -0.08 8.59 -39.97 -0.34 -0.42 16 6 C -0.05 -0.04 10.06 -39.53 -0.40 -0.43 16 7 C -0.12 -0.22 6.16 -106.93 -0.66 -0.88 16 8 C -0.10 -0.18 10.53 -39.15 -0.41 -0.60 16 9 C 0.01 0.01 6.97 -82.29 -0.57 -0.56 16 10 C 0.59 0.85 7.80 -12.68 -0.10 0.75 16 11 O -0.51 -2.58 16.44 5.23 0.09 -2.50 16 12 N -0.71 1.40 5.26 -54.20 -0.29 1.11 16 13 C 0.12 -0.31 4.32 -67.12 -0.29 -0.60 16 14 H 0.11 -0.10 7.47 -51.93 -0.39 -0.49 16 15 C -0.15 0.43 7.43 -25.92 -0.19 0.24 16 16 C -0.13 0.58 3.84 -89.81 -0.34 0.24 16 17 H 0.10 -0.36 8.14 -51.93 -0.42 -0.79 16 18 C 0.11 -0.48 5.99 -4.05 -0.02 -0.51 16 19 N -0.46 0.41 2.75 -118.58 -0.33 0.09 16 20 C -0.05 -0.01 11.58 -16.56 -0.19 -0.21 16 21 C -0.03 -0.08 11.87 -17.82 -0.21 -0.29 16 22 N -0.49 -2.09 11.25 -14.67 -0.17 -2.25 16 23 C 0.18 0.15 12.56 -90.37 -1.14 -0.98 16 24 C -0.14 0.69 7.39 -25.92 -0.19 0.50 16 25 N -0.58 0.36 6.07 -7.36 -0.04 0.32 16 26 C 0.12 0.15 7.25 -83.98 -0.61 -0.45 16 27 C -0.10 -0.11 9.69 -39.42 -0.38 -0.49 16 28 H 0.38 -1.17 8.74 45.56 0.40 -0.77 16 29 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 30 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 31 H -0.25 -0.49 7.04 56.52 0.40 -0.10 16 32 H 0.13 -0.15 4.81 -52.49 -0.25 -0.41 16 33 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 34 H 0.16 0.19 8.06 -52.49 -0.42 -0.24 16 35 H 0.40 -1.72 7.76 -40.82 -0.32 -2.04 16 36 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.10 -0.36 7.90 -51.93 -0.41 -0.77 16 38 H 0.10 -0.48 7.84 -51.93 -0.41 -0.89 16 39 H 0.10 -0.54 8.14 -51.93 -0.42 -0.96 16 40 H 0.17 -0.38 8.06 -52.49 -0.42 -0.80 16 41 H 0.17 0.16 8.06 -52.49 -0.42 -0.26 16 42 H 0.20 -0.48 8.06 -52.49 -0.42 -0.91 16 43 H 0.10 -0.62 8.10 -51.93 -0.42 -1.04 16 44 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 45 H 0.42 -1.55 8.12 -40.82 -0.33 -1.88 16 46 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 LS Contribution 388.34 15.07 5.85 5.85 Total: 0.00 -11.62 388.34 -12.89 -24.52 By element: Atomic # 1 Polarization: -9.18 SS G_CDS: -5.97 Total: -15.16 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -6.52 Total: -5.17 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -0.82 Total: -0.74 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -0.37 Total: -3.41 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: -5.07 Total: -5.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -11.62 -12.89 -24.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.078 kcal (2) G-P(sol) polarization free energy of solvation -11.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds