Wall clock time and date at job start Sun Mar 7 2021 04:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.46918 * 2 1 4 4 C 1.50694 * 109.47012 * 120.00075 * 2 1 3 5 5 C 1.38905 * 119.67681 * 244.99720 * 4 2 1 6 6 C 1.36476 * 120.61621 * 179.97438 * 5 4 2 7 7 C 1.40062 * 119.82684 * 0.02562 * 6 5 4 8 8 C 1.41594 * 133.37691 * 180.32199 * 7 6 5 9 9 C 1.35864 * 107.72471 * 180.02562 * 8 7 6 10 10 C 1.47059 * 125.42420 * 179.88080 * 9 8 7 11 11 O 1.21650 * 120.00103 * 359.69520 * 10 9 8 12 12 N 1.34783 * 120.00074 * 179.69421 * 10 9 8 13 13 C 1.46504 * 119.99904 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.90886 * 336.25051 * 13 12 10 15 15 C 1.53783 * 113.61068 * 107.50509 * 13 12 10 16 16 C 1.53781 * 87.07946 * 89.11669 * 15 13 12 17 17 H 1.09006 * 113.68810 * 270.87229 * 16 15 13 18 18 C 1.52998 * 113.61609 * 139.98322 * 16 15 13 19 19 N 1.46494 * 109.47430 * 87.49812 * 18 16 15 20 20 C 1.36888 * 126.39835 * 269.97662 * 19 18 16 21 21 C 1.34666 * 106.81628 * 179.97438 * 20 19 18 22 22 N 1.34121 * 108.02399 * 0.02562 * 21 20 19 23 23 C 1.30504 * 109.25569 * 359.97438 * 22 21 20 24 24 C 1.53776 * 113.61093 * 205.00090 * 13 12 10 25 25 N 1.38147 * 109.14799 * 359.62058 * 9 8 7 26 26 C 1.37484 * 108.79183 * 0.23732 * 25 9 8 27 27 C 1.37707 * 119.67684 * 64.99787 * 4 2 1 28 28 H 0.96705 * 113.99706 * 59.99509 * 1 2 3 29 29 H 1.08996 * 109.47102 * 240.00236 * 2 1 3 30 30 H 1.48500 * 110.00248 * 298.67847 * 3 2 1 31 31 H 1.48497 * 109.99732 * 60.00418 * 3 2 1 32 32 H 1.08000 * 119.68962 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.08173 * 180.02562 * 6 5 4 34 34 H 1.07998 * 126.14008 * 359.94697 * 8 7 6 35 35 H 0.96992 * 119.99951 * 0.02562 * 12 10 9 36 36 H 1.08998 * 113.61735 * 334.56380 * 15 13 12 37 37 H 1.09000 * 113.60996 * 203.65746 * 15 13 12 38 38 H 1.08998 * 109.46662 * 327.49405 * 18 16 15 39 39 H 1.09002 * 109.47089 * 207.50286 * 18 16 15 40 40 H 1.08000 * 126.58845 * 359.97438 * 20 19 18 41 41 H 1.08001 * 125.98583 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.64666 * 180.02562 * 23 22 21 43 43 H 1.09005 * 113.61364 * 156.33832 * 24 13 12 44 44 H 1.09001 * 113.61750 * 25.43710 * 24 13 12 45 45 H 0.97002 * 125.60570 * 180.22201 * 25 9 8 46 46 H 1.07999 * 120.09647 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6414 -0.0024 2.1916 6 6 3.1048 -0.6264 3.3134 7 6 2.8640 -1.9935 3.4999 8 6 3.1960 -2.9080 4.5287 9 6 2.7007 -4.1234 4.1775 10 6 2.8267 -5.3563 4.9691 11 8 3.4192 -5.3392 6.0314 12 7 2.2857 -6.5053 4.5176 13 6 2.4118 -7.7337 5.3060 14 1 3.2652 -7.7171 5.9839 15 6 1.0997 -8.1718 5.9778 16 6 0.7985 -8.9632 4.6942 17 1 0.2635 -8.3866 3.9395 18 6 0.1680 -10.3331 4.9524 19 7 -1.2876 -10.1924 5.0390 20 6 -2.0139 -9.9472 6.1731 21 6 -3.3076 -9.8932 5.8031 22 7 -3.3697 -10.1003 4.4794 23 6 -2.1634 -10.2801 4.0149 24 6 2.3181 -9.0177 4.4649 25 7 2.0547 -4.0152 2.9611 26 6 2.1432 -2.7138 2.5269 27 6 1.6818 -2.0551 1.3909 28 1 -0.3933 0.4418 -0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5879 2.4587 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.8280 1.0519 2.0502 33 1 3.6556 -0.0675 4.0554 34 1 3.7456 -2.6805 5.4301 35 1 1.8137 -6.5191 3.6704 36 1 0.4058 -7.3506 6.1575 37 1 1.2475 -8.8021 6.8547 38 1 0.5503 -10.7381 5.8894 39 1 0.4198 -11.0089 4.1351 40 1 -1.6243 -9.8213 7.1724 41 1 -4.1479 -9.7144 6.4576 42 1 -1.9080 -10.4677 2.9824 43 1 2.7989 -9.8792 4.9283 44 1 2.6078 -8.8795 3.4232 45 1 1.6117 -4.7386 2.4906 46 1 1.1284 -2.5969 0.6381 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:45:53 Heat of formation + Delta-G solvation = 94.355641 kcal Electronic energy + Delta-G solvation = -29541.839586 eV Core-core repulsion = 25400.792669 eV Total energy + Delta-G solvation = -4141.046917 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.97366 -42.74755 -41.22594 -39.62406 -38.82613 -37.10872 -35.49880 -34.03167 -33.33450 -31.23309 -30.47644 -30.42950 -28.91037 -26.98769 -26.76102 -24.86505 -23.87560 -23.19668 -22.26696 -21.98078 -21.83375 -21.32142 -20.43614 -19.64094 -18.56523 -18.36655 -18.02175 -17.27905 -17.05653 -16.63191 -16.50184 -16.28515 -16.00582 -15.61029 -15.33457 -15.12184 -15.01231 -14.95309 -14.86736 -14.75270 -14.55654 -14.30654 -14.21322 -13.90400 -13.80563 -13.53637 -13.48479 -12.83424 -12.73288 -12.40084 -12.34903 -12.15554 -11.77915 -11.69463 -11.48368 -11.39446 -10.99680 -10.93249 -10.51129 -10.46966 -10.29540 -9.46422 -9.36934 -8.86339 -4.88501 -0.41570 0.49075 0.89130 1.14419 1.31733 1.62816 1.68805 1.88544 1.91895 1.99046 2.10905 2.21611 2.69760 3.33544 3.39487 3.43495 3.50247 3.62003 3.67865 3.74372 3.84815 3.87698 4.01149 4.02162 4.15419 4.18281 4.23141 4.27477 4.40603 4.42513 4.49355 4.57275 4.59147 4.65297 4.72671 4.77101 4.78214 4.85241 4.92367 4.95156 4.95966 5.06320 5.26235 5.33808 5.36493 5.45781 5.51519 5.54713 5.80805 5.94080 6.18139 6.31722 6.37224 6.60004 6.87821 7.15014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.083 4.083 3 Si 0.765 3.235 4 C -0.051 4.051 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.116 4.116 9 C 0.008 3.992 10 C 0.589 3.411 11 O -0.557 6.557 12 N -0.697 5.697 13 C 0.108 3.892 14 H 0.094 0.906 15 C -0.146 4.146 16 C -0.118 4.118 17 H 0.092 0.908 18 C 0.110 3.890 19 N -0.452 5.452 20 C -0.046 4.046 21 C -0.068 4.068 22 N -0.546 5.546 23 C 0.174 3.826 24 C -0.116 4.116 25 N -0.564 5.564 26 C 0.108 3.892 27 C -0.111 4.111 28 H 0.395 0.605 29 H 0.099 0.901 30 H -0.287 1.287 31 H -0.299 1.299 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.229 0.771 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.431 0.569 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -2.810 -4.888 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.192 4.192 3 Si 0.671 3.329 4 C -0.053 4.053 5 C -0.169 4.169 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.101 4.101 10 C 0.376 3.624 11 O -0.435 6.435 12 N -0.347 5.347 13 C 0.003 3.997 14 H 0.112 0.888 15 C -0.185 4.185 16 C -0.137 4.137 17 H 0.111 0.889 18 C -0.011 4.011 19 N -0.133 5.133 20 C -0.180 4.180 21 C -0.215 4.215 22 N -0.265 5.265 23 C -0.109 4.109 24 C -0.154 4.154 25 N -0.170 5.170 26 C -0.003 4.003 27 C -0.131 4.131 28 H 0.246 0.754 29 H 0.117 0.883 30 H -0.215 1.215 31 H -0.227 1.227 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.245 0.755 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.247 -2.533 -4.080 7.113 hybrid contribution -1.271 -0.214 -0.352 1.336 sum 3.976 -2.747 -4.431 6.557 Atomic orbital electron populations 1.86557 1.18472 1.80697 1.51137 1.24992 0.84076 1.11797 0.98353 0.94014 0.90416 0.72234 0.76215 1.19209 0.97579 0.92914 0.95590 1.20693 1.01267 1.00375 0.94525 1.20615 0.97771 0.91777 0.97495 1.18437 1.04406 0.95083 0.96057 1.21110 1.02614 0.90522 1.00043 1.19979 1.05281 0.95598 0.89278 1.17247 0.78324 0.82460 0.84326 1.90860 1.43862 1.85400 1.23376 1.45442 1.56501 1.07955 1.24839 1.21985 0.99161 0.83658 0.94867 0.88831 1.23546 0.96681 1.00078 0.98179 1.22948 0.96695 0.95634 0.98391 0.88941 1.22236 0.74456 0.98049 1.06366 1.45745 1.08820 1.51542 1.07232 1.23058 0.92276 1.09280 0.93383 1.22593 0.97233 1.09338 0.92333 1.70238 1.24252 1.20643 1.11390 1.25522 0.84004 1.04916 0.96431 1.23293 0.93824 0.96611 1.01716 1.41752 1.48399 1.09008 1.17848 1.18418 1.00749 0.84469 0.96650 1.20007 1.02622 0.94239 0.96265 0.75428 0.88272 1.21478 1.22710 0.83985 0.83311 0.82539 0.75396 0.92955 0.87584 0.87229 0.86275 0.78875 0.81415 0.75460 0.86091 0.89037 0.72883 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.72 12.80 -148.98 -1.91 -2.63 16 2 C -0.08 0.14 2.78 71.23 0.20 0.33 16 3 Si 0.77 -1.95 29.82 68.60 2.05 0.10 16 4 C -0.05 -0.09 5.39 -19.83 -0.11 -0.20 16 5 C -0.15 -0.20 8.59 22.02 0.19 -0.01 16 6 C -0.06 -0.13 10.06 22.30 0.22 0.10 16 7 C -0.14 -0.65 6.16 -21.36 -0.13 -0.78 16 8 C -0.12 -0.63 10.53 22.55 0.24 -0.39 16 9 C 0.01 0.03 6.97 39.91 0.28 0.30 16 10 C 0.59 2.33 7.80 86.56 0.68 3.01 16 11 O -0.56 -6.67 16.44 -4.19 -0.07 -6.74 16 12 N -0.70 2.72 5.26 -443.63 -2.33 0.39 16 13 C 0.11 -0.59 4.32 45.52 0.20 -0.39 16 14 H 0.09 -0.11 7.47 -2.39 -0.02 -0.13 16 15 C -0.15 0.94 7.43 31.12 0.23 1.17 16 16 C -0.12 1.26 3.84 -10.27 -0.04 1.22 16 17 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 18 C 0.11 -1.21 5.99 86.38 0.52 -0.69 16 19 N -0.45 1.35 2.75 -529.08 -1.46 -0.10 16 20 C -0.05 -0.01 11.58 83.08 0.96 0.95 16 21 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 22 N -0.55 -5.10 11.25 -200.32 -2.25 -7.36 16 23 C 0.17 0.21 12.56 180.26 2.26 2.47 16 24 C -0.12 1.44 7.39 31.12 0.23 1.67 16 25 N -0.56 0.64 6.07 -177.19 -1.08 -0.44 16 26 C 0.11 0.32 7.25 39.13 0.28 0.60 16 27 C -0.11 -0.21 9.69 22.37 0.22 0.01 16 28 H 0.40 -2.65 8.74 -74.05 -0.65 -3.30 16 29 H 0.10 -0.61 7.96 -2.39 -0.02 -0.63 16 30 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 31 H -0.30 -1.49 7.04 99.48 0.70 -0.79 16 32 H 0.14 -0.31 4.81 -2.91 -0.01 -0.32 16 33 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 34 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.41 -3.88 7.76 -92.71 -0.72 -4.60 16 36 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.11 -0.88 7.90 -2.39 -0.02 -0.90 16 38 H 0.11 -1.42 7.84 -2.39 -0.02 -1.44 16 39 H 0.12 -1.75 8.14 -2.39 -0.02 -1.77 16 40 H 0.19 -1.02 8.06 -2.91 -0.02 -1.04 16 41 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.23 -1.42 8.06 -2.91 -0.02 -1.45 16 43 H 0.12 -1.82 8.10 -2.38 -0.02 -1.84 16 44 H 0.09 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.43 -3.46 8.12 -92.71 -0.75 -4.21 16 46 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -29.72 388.34 -0.67 -30.39 By element: Atomic # 1 Polarization: -22.51 SS G_CDS: -1.04 Total: -23.55 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 7.42 Total: 9.93 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -7.12 Total: -7.51 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.98 Total: -9.37 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.05 Total: 0.10 kcal Total: -29.72 -0.67 -30.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.750 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds