Wall clock time and date at job start Sun Mar 7 2021 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34706 * 125.66608 * 299.71871 * 4 2 1 6 6 C 1.40971 * 107.02996 * 179.88841 * 5 4 2 7 7 C 1.35937 * 106.73907 * 0.36525 * 6 5 4 8 8 C 1.47820 * 125.93002 * 179.77080 * 7 6 5 9 9 C 1.39812 * 119.99769 * 359.70493 * 8 7 6 10 10 C 1.37808 * 120.24306 * 179.71576 * 9 8 7 11 11 C 1.38779 * 120.24419 * 0.56033 * 10 9 8 12 12 O 1.35650 * 120.00487 * 179.69988 * 11 10 9 13 13 C 1.40254 * 119.99505 * 359.72175 * 11 10 9 14 14 C 1.47562 * 120.11801 * 180.02562 * 13 11 10 15 15 O 1.21585 * 120.00278 * 359.97438 * 14 13 11 16 16 N 1.34785 * 119.99568 * 179.97438 * 14 13 11 17 17 C 1.46499 * 119.99659 * 180.02562 * 16 14 13 18 18 H 1.09004 * 112.84926 * 336.18867 * 17 16 14 19 19 C 1.53780 * 113.61683 * 107.50274 * 17 16 14 20 20 C 1.53779 * 87.07880 * 89.11169 * 19 17 16 21 21 H 1.09002 * 113.69300 * 270.87039 * 20 19 17 22 22 C 1.53011 * 113.61141 * 139.98337 * 20 19 17 23 23 N 1.46497 * 109.47199 * 87.50023 * 22 20 19 24 24 C 1.36879 * 126.39728 * 269.71829 * 23 22 20 25 25 C 1.34676 * 106.81716 * 179.84457 * 24 23 22 26 26 N 1.34130 * 108.01622 * 0.41613 * 25 24 23 27 27 C 1.30496 * 109.25909 * 359.73515 * 26 25 24 28 28 C 1.53776 * 87.08463 * 25.43389 * 20 19 17 29 29 C 1.39211 * 120.00151 * 179.97438 * 8 7 6 30 30 O 1.34345 * 125.66280 * 120.02124 * 4 2 1 31 31 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 32 32 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 33 33 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 34 34 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 35 35 H 1.07994 * 126.48315 * 359.97438 * 5 4 2 36 36 H 1.07993 * 126.62754 * 180.14679 * 6 5 4 37 37 H 1.08007 * 119.87457 * 359.97438 * 9 8 7 38 38 H 1.08000 * 119.87773 * 180.26111 * 10 9 8 39 39 H 0.96700 * 113.99845 * 270.02426 * 12 11 10 40 40 H 0.96998 * 119.99821 * 359.97438 * 16 14 13 41 41 H 1.08998 * 113.61409 * 203.66009 * 19 17 16 42 42 H 1.09000 * 113.61208 * 334.56610 * 19 17 16 43 43 H 1.08996 * 109.46700 * 207.50379 * 22 20 19 44 44 H 1.09008 * 109.46717 * 327.50145 * 22 20 19 45 45 H 1.08000 * 126.59227 * 359.97438 * 24 23 22 46 46 H 1.07996 * 125.98878 * 180.11857 * 25 24 23 47 47 H 1.07997 * 125.64948 * 180.02562 * 27 26 25 48 48 H 1.08996 * 113.61740 * 220.01623 * 28 20 19 49 49 H 1.09007 * 113.61401 * 89.10927 * 28 20 19 50 50 H 1.07992 * 120.11838 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6815 -1.9942 -1.5531 6 6 2.3352 -2.2471 -2.7763 7 6 2.9608 -1.0938 -3.1317 8 6 3.7778 -0.8889 -4.3465 9 6 3.9659 -1.9409 -5.2479 10 6 4.7218 -1.7539 -6.3849 11 6 5.3113 -0.5233 -6.6378 12 8 6.0594 -0.3463 -7.7555 13 6 5.1340 0.5374 -5.7374 14 6 5.7592 1.8472 -6.0038 15 8 6.4298 2.0084 -7.0052 16 7 5.5868 2.8649 -5.1371 17 6 6.2070 4.1655 -5.4019 18 1 7.0777 4.0943 -6.0538 19 6 5.2041 5.2512 -5.8266 20 6 5.0404 5.5737 -4.3320 21 1 4.2602 4.9918 -3.8412 22 6 4.9399 7.0714 -4.0355 23 7 3.5415 7.4963 -4.1359 24 6 2.9117 7.9583 -5.2599 25 6 1.6400 8.2304 -4.9100 26 7 1.4998 7.9509 -3.6057 27 6 2.6347 7.5108 -3.1354 28 6 6.4534 5.0000 -4.1339 29 6 4.3644 0.3498 -4.5901 30 8 2.7072 -0.1702 -2.1849 31 1 -0.3933 0.4418 0.7651 32 1 1.7923 -0.5139 0.8900 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2084 35 1 1.0911 -2.6963 -0.9834 36 1 2.3410 -3.1783 -3.3232 37 1 3.5138 -2.9026 -5.0545 38 1 4.8598 -2.5694 -7.0794 39 1 6.9973 -0.5499 -7.6373 40 1 5.0515 2.7364 -4.3385 41 1 5.6543 6.0607 -6.4012 42 1 4.3005 4.8541 -6.2891 43 1 5.3081 7.2679 -3.0286 44 1 5.5408 7.6256 -4.7567 45 1 3.3498 8.0793 -6.2397 46 1 0.8696 8.6116 -5.5638 47 1 2.8181 7.2079 -2.1151 48 1 6.5583 4.4001 -3.2300 49 1 7.2451 5.7408 -4.2458 50 1 4.2235 1.1626 -3.8931 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:04 Heat of formation + Delta-G solvation = 41.836094 kcal Electronic energy + Delta-G solvation = -36489.526087 eV Core-core repulsion = 31646.037137 eV Total energy + Delta-G solvation = -4843.488949 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.76953 -42.94930 -41.78164 -40.67401 -39.08019 -38.11921 -37.83505 -35.43639 -34.38737 -33.99558 -32.86587 -32.29372 -30.38693 -30.19518 -28.90711 -27.00692 -26.42504 -25.67655 -24.34934 -23.52454 -23.00143 -22.21348 -21.92842 -21.84765 -21.25064 -20.53205 -19.66706 -19.08466 -18.76952 -18.44249 -17.88034 -17.36417 -17.12978 -16.89344 -16.64113 -16.56492 -16.21897 -15.95303 -15.89723 -15.83719 -15.42126 -15.11570 -14.94280 -14.80669 -14.64618 -14.50809 -14.44974 -14.22161 -14.15135 -13.95575 -13.94542 -13.71324 -13.61014 -13.28473 -13.18182 -12.97949 -12.73161 -12.55620 -12.15556 -11.96558 -11.85080 -11.59361 -11.11652 -10.89188 -10.82702 -10.70878 -10.48723 -10.43335 -10.39944 -10.16301 -9.39349 -8.96462 -5.19414 -0.64041 -0.31501 0.68761 1.04222 1.16428 1.35354 1.51194 1.57377 1.80323 1.84107 1.88926 1.90117 2.34393 2.54050 2.99991 3.10114 3.10711 3.20539 3.32396 3.44356 3.45793 3.54920 3.56947 3.72663 3.81148 3.84797 3.89470 3.91532 3.94522 4.01959 4.04567 4.16763 4.21498 4.28922 4.41820 4.42499 4.49726 4.53146 4.57612 4.60976 4.70279 4.72788 4.77245 4.80229 4.84798 4.88929 4.93569 5.02492 5.08134 5.33497 5.34527 5.38205 5.39335 5.86811 5.93553 6.27090 6.29371 6.39399 6.59508 7.08399 7.21737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.035 4.035 3 Si 0.704 3.296 4 C -0.008 4.008 5 C -0.164 4.164 6 C -0.184 4.184 7 C 0.031 3.969 8 C -0.032 4.032 9 C -0.051 4.051 10 C -0.147 4.147 11 C 0.181 3.819 12 O -0.475 6.475 13 C -0.165 4.165 14 C 0.565 3.435 15 O -0.512 6.512 16 N -0.713 5.713 17 C 0.123 3.877 18 H 0.110 0.890 19 C -0.145 4.145 20 C -0.131 4.131 21 H 0.095 0.905 22 C 0.114 3.886 23 N -0.458 5.458 24 C -0.053 4.053 25 C -0.031 4.031 26 N -0.494 5.494 27 C 0.178 3.822 28 C -0.136 4.136 29 C -0.055 4.055 30 O -0.173 6.173 31 H 0.391 0.609 32 H 0.095 0.905 33 H -0.252 1.252 34 H -0.248 1.248 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.400 0.600 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.172 0.828 46 H 0.169 0.831 47 H 0.202 0.798 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -1.703 6.289 7.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.144 4.144 3 Si 0.604 3.396 4 C -0.058 4.058 5 C -0.183 4.183 6 C -0.203 4.203 7 C -0.018 4.018 8 C -0.033 4.033 9 C -0.070 4.070 10 C -0.165 4.165 11 C 0.134 3.866 12 O -0.286 6.286 13 C -0.168 4.168 14 C 0.352 3.648 15 O -0.388 6.388 16 N -0.366 5.366 17 C 0.018 3.982 18 H 0.128 0.872 19 C -0.184 4.184 20 C -0.150 4.150 21 H 0.114 0.886 22 C -0.009 4.009 23 N -0.141 5.141 24 C -0.186 4.186 25 C -0.179 4.179 26 N -0.212 5.212 27 C -0.105 4.105 28 C -0.175 4.175 29 C -0.074 4.074 30 O -0.072 6.072 31 H 0.240 0.760 32 H 0.113 0.887 33 H -0.176 1.176 34 H -0.172 1.172 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.259 0.741 40 H 0.234 0.766 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.189 0.811 46 H 0.186 0.814 47 H 0.219 0.781 48 H 0.098 0.902 49 H 0.122 0.878 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.324 -0.771 4.770 5.865 hybrid contribution 0.695 -1.078 0.023 1.283 sum 4.019 -1.849 4.793 6.523 Atomic orbital electron populations 1.86464 1.16256 1.81989 1.50267 1.23752 0.86231 1.11555 0.92899 0.95194 0.80780 0.76434 0.87229 1.21361 0.98933 0.93242 0.92230 1.21538 1.03109 0.95903 0.97726 1.21869 1.01504 0.98833 0.98138 1.20285 1.02764 0.88241 0.90512 1.17583 0.99041 0.94558 0.92068 1.21143 0.95564 0.98253 0.91993 1.21408 1.00027 0.97086 0.98012 1.18580 0.92731 0.90637 0.84661 1.84755 1.23819 1.90298 1.29747 1.20242 1.04466 0.95378 0.96761 1.17967 0.80466 0.83391 0.82978 1.90838 1.38772 1.82992 1.26173 1.45603 1.53924 1.10981 1.26076 1.21780 0.96926 0.81655 0.97866 0.87226 1.23517 1.00517 0.99008 0.95357 1.23074 0.98585 0.94978 0.98359 0.88636 1.21954 0.79567 0.94879 1.04454 1.45572 1.10943 1.48049 1.09496 1.22742 0.95193 1.08104 0.92562 1.22352 0.95840 1.06799 0.92860 1.70308 1.23625 1.17002 1.10285 1.25006 0.84889 1.04967 0.95606 1.23350 0.96483 0.99319 0.98355 1.21247 0.94231 0.96597 0.95336 1.83925 1.55702 1.39401 1.28136 0.75969 0.88747 1.17633 1.17221 0.82540 0.82518 0.84045 0.83457 0.74119 0.76612 0.88616 0.90697 0.88508 0.88601 0.81076 0.81406 0.78146 0.90228 0.87844 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.35 12.85 -35.23 -0.45 -0.10 16 2 C -0.03 0.03 2.97 36.01 0.11 0.13 16 3 Si 0.70 -1.13 32.10 -169.99 -5.46 -6.58 16 4 C -0.01 -0.02 6.25 -35.56 -0.22 -0.24 16 5 C -0.16 -0.30 10.77 -39.80 -0.43 -0.73 16 6 C -0.18 -0.24 10.26 -39.37 -0.40 -0.65 16 7 C 0.03 0.07 7.03 -36.49 -0.26 -0.18 16 8 C -0.03 -0.04 5.87 -105.03 -0.62 -0.66 16 9 C -0.05 0.02 9.54 -39.15 -0.37 -0.35 16 10 C -0.15 0.04 9.96 -39.54 -0.39 -0.35 16 11 C 0.18 0.30 6.72 -38.62 -0.26 0.05 16 12 O -0.47 -1.04 11.55 -40.60 -0.47 -1.51 16 13 C -0.16 -0.32 5.88 -104.90 -0.62 -0.94 16 14 C 0.56 1.62 7.76 -12.45 -0.10 1.52 16 15 O -0.51 -3.03 14.74 -16.66 -0.25 -3.28 16 16 N -0.71 -0.05 5.21 -54.05 -0.28 -0.33 16 17 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 18 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 19 C -0.15 0.22 7.43 -25.92 -0.19 0.03 16 20 C -0.13 0.39 3.84 -89.80 -0.34 0.04 16 21 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 22 C 0.11 -0.37 5.99 -4.04 -0.02 -0.40 16 23 N -0.46 0.01 2.75 -118.57 -0.33 -0.31 16 24 C -0.05 -0.05 11.58 -16.56 -0.19 -0.24 16 25 C -0.03 -0.10 11.87 -17.81 -0.21 -0.31 16 26 N -0.49 -2.38 11.25 -14.66 -0.16 -2.54 16 27 C 0.18 0.29 12.56 -90.38 -1.14 -0.85 16 28 C -0.14 0.51 7.39 -25.92 -0.19 0.31 16 29 C -0.06 -0.06 9.20 -38.78 -0.36 -0.42 16 30 O -0.17 -0.57 8.78 4.57 0.04 -0.53 16 31 H 0.39 -2.38 8.74 45.56 0.40 -1.98 16 32 H 0.09 -0.30 7.96 -51.93 -0.41 -0.72 16 33 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 34 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 35 H 0.16 0.03 8.06 -52.49 -0.42 -0.39 16 36 H 0.16 -0.21 7.24 -52.49 -0.38 -0.59 16 37 H 0.14 -0.40 6.96 -52.48 -0.37 -0.76 16 38 H 0.15 -0.33 8.06 -52.49 -0.42 -0.76 16 39 H 0.40 -0.69 9.06 45.56 0.41 -0.27 16 40 H 0.40 -0.59 6.73 -40.82 -0.27 -0.86 16 41 H 0.10 -0.24 7.90 -51.93 -0.41 -0.65 16 42 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 44 H 0.10 -0.40 7.84 -51.92 -0.41 -0.81 16 45 H 0.17 -0.25 8.06 -52.49 -0.42 -0.67 16 46 H 0.17 0.25 8.06 -52.49 -0.42 -0.18 16 47 H 0.20 -0.34 8.06 -52.49 -0.42 -0.77 16 48 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 49 H 0.10 -0.51 8.10 -51.93 -0.42 -0.93 16 50 H 0.13 -0.02 6.24 -52.49 -0.33 -0.34 16 LS Contribution 427.74 15.07 6.45 6.45 Total: 0.00 -13.95 427.74 -12.99 -26.94 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: -5.58 Total: -13.56 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -6.50 Total: -4.65 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -0.77 Total: -3.18 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -1.13 Total: -5.42 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.46 Total: -6.58 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -13.95 -12.99 -26.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.776 kcal (2) G-P(sol) polarization free energy of solvation -13.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds