Wall clock time and date at job start Sun Mar 7 2021 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.46964 * 239.99985 * 2 1 3 5 5 C 1.34706 * 125.66608 * 299.71871 * 4 2 1 6 6 C 1.40971 * 107.02996 * 179.88841 * 5 4 2 7 7 C 1.35937 * 106.73907 * 0.36525 * 6 5 4 8 8 C 1.47820 * 125.93002 * 179.77080 * 7 6 5 9 9 C 1.39812 * 119.99769 * 359.70493 * 8 7 6 10 10 C 1.37808 * 120.24306 * 179.71576 * 9 8 7 11 11 C 1.38779 * 120.24419 * 0.56033 * 10 9 8 12 12 O 1.35650 * 120.00487 * 179.69988 * 11 10 9 13 13 C 1.40254 * 119.99505 * 359.72175 * 11 10 9 14 14 C 1.47562 * 120.11801 * 180.02562 * 13 11 10 15 15 O 1.21585 * 120.00278 * 359.97438 * 14 13 11 16 16 N 1.34785 * 119.99568 * 179.97438 * 14 13 11 17 17 C 1.46499 * 119.99659 * 180.02562 * 16 14 13 18 18 H 1.09004 * 112.84926 * 336.18867 * 17 16 14 19 19 C 1.53780 * 113.61683 * 107.50274 * 17 16 14 20 20 C 1.53779 * 87.07880 * 89.11169 * 19 17 16 21 21 H 1.09002 * 113.69300 * 270.87039 * 20 19 17 22 22 C 1.53011 * 113.61141 * 139.98337 * 20 19 17 23 23 N 1.46497 * 109.47199 * 87.50023 * 22 20 19 24 24 C 1.36879 * 126.39728 * 269.71829 * 23 22 20 25 25 C 1.34676 * 106.81716 * 179.84457 * 24 23 22 26 26 N 1.34130 * 108.01622 * 0.41613 * 25 24 23 27 27 C 1.30496 * 109.25909 * 359.73515 * 26 25 24 28 28 C 1.53776 * 87.08463 * 25.43389 * 20 19 17 29 29 C 1.39211 * 120.00151 * 179.97438 * 8 7 6 30 30 O 1.34345 * 125.66280 * 120.02124 * 4 2 1 31 31 H 0.96708 * 113.99549 * 300.00274 * 1 2 3 32 32 H 1.09002 * 109.47259 * 120.00198 * 2 1 3 33 33 H 1.48501 * 110.00188 * 178.68319 * 3 2 1 34 34 H 1.48498 * 110.00005 * 300.00280 * 3 2 1 35 35 H 1.07994 * 126.48315 * 359.97438 * 5 4 2 36 36 H 1.07993 * 126.62754 * 180.14679 * 6 5 4 37 37 H 1.08007 * 119.87457 * 359.97438 * 9 8 7 38 38 H 1.08000 * 119.87773 * 180.26111 * 10 9 8 39 39 H 0.96700 * 113.99845 * 270.02426 * 12 11 10 40 40 H 0.96998 * 119.99821 * 359.97438 * 16 14 13 41 41 H 1.08998 * 113.61409 * 203.66009 * 19 17 16 42 42 H 1.09000 * 113.61208 * 334.56610 * 19 17 16 43 43 H 1.08996 * 109.46700 * 207.50379 * 22 20 19 44 44 H 1.09008 * 109.46717 * 327.50145 * 22 20 19 45 45 H 1.08000 * 126.59227 * 359.97438 * 24 23 22 46 46 H 1.07996 * 125.98878 * 180.11857 * 25 24 23 47 47 H 1.07997 * 125.64948 * 180.02562 * 27 26 25 48 48 H 1.08996 * 113.61740 * 220.01623 * 28 20 19 49 49 H 1.09007 * 113.61401 * 89.10927 * 28 20 19 50 50 H 1.07992 * 120.11838 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6815 -1.9942 -1.5531 6 6 2.3352 -2.2471 -2.7763 7 6 2.9608 -1.0938 -3.1317 8 6 3.7778 -0.8889 -4.3465 9 6 3.9659 -1.9409 -5.2479 10 6 4.7218 -1.7539 -6.3849 11 6 5.3113 -0.5233 -6.6378 12 8 6.0594 -0.3463 -7.7555 13 6 5.1340 0.5374 -5.7374 14 6 5.7592 1.8472 -6.0038 15 8 6.4298 2.0084 -7.0052 16 7 5.5868 2.8649 -5.1371 17 6 6.2070 4.1655 -5.4019 18 1 7.0777 4.0943 -6.0538 19 6 5.2041 5.2512 -5.8266 20 6 5.0404 5.5737 -4.3320 21 1 4.2602 4.9918 -3.8412 22 6 4.9399 7.0714 -4.0355 23 7 3.5415 7.4963 -4.1359 24 6 2.9117 7.9583 -5.2599 25 6 1.6400 8.2304 -4.9100 26 7 1.4998 7.9509 -3.6057 27 6 2.6347 7.5108 -3.1354 28 6 6.4534 5.0000 -4.1339 29 6 4.3644 0.3498 -4.5901 30 8 2.7072 -0.1702 -2.1849 31 1 -0.3933 0.4418 0.7651 32 1 1.7923 -0.5139 0.8900 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2084 35 1 1.0911 -2.6963 -0.9834 36 1 2.3410 -3.1783 -3.3232 37 1 3.5138 -2.9026 -5.0545 38 1 4.8598 -2.5694 -7.0794 39 1 6.9973 -0.5499 -7.6373 40 1 5.0515 2.7364 -4.3385 41 1 5.6543 6.0607 -6.4012 42 1 4.3005 4.8541 -6.2891 43 1 5.3081 7.2679 -3.0286 44 1 5.5408 7.6256 -4.7567 45 1 3.3498 8.0793 -6.2397 46 1 0.8696 8.6116 -5.5638 47 1 2.8181 7.2079 -2.1151 48 1 6.5583 4.4001 -3.2300 49 1 7.2451 5.7408 -4.2458 50 1 4.2235 1.1626 -3.8931 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:03 Heat of formation + Delta-G solvation = 40.195474 kcal Electronic energy + Delta-G solvation = -36489.597229 eV Core-core repulsion = 31646.037137 eV Total energy + Delta-G solvation = -4843.560092 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.85173 -42.99869 -41.85782 -40.63865 -39.18081 -38.11802 -37.80429 -35.48769 -34.46764 -34.06939 -32.90634 -32.31459 -30.46612 -30.20699 -28.84435 -26.84027 -26.42806 -25.71043 -24.30569 -23.54147 -23.07354 -22.30286 -21.98436 -21.86890 -21.33259 -20.48751 -19.69700 -19.14892 -18.67479 -18.41979 -17.95378 -17.37217 -17.20510 -16.92105 -16.63244 -16.54058 -16.26981 -15.99657 -15.89312 -15.83409 -15.48203 -15.11620 -14.98388 -14.81666 -14.62706 -14.53781 -14.42783 -14.25262 -14.21950 -13.99063 -13.85413 -13.66360 -13.53322 -13.30186 -13.21969 -12.83984 -12.71110 -12.43425 -12.21693 -12.03860 -11.79934 -11.45731 -11.20114 -11.07363 -10.96662 -10.71533 -10.54145 -10.45830 -10.38248 -10.19205 -9.49115 -9.02855 -5.10595 -0.69444 -0.37019 0.62441 1.11143 1.13490 1.32413 1.47678 1.61423 1.71519 1.84644 1.88684 1.95963 2.18850 2.48379 2.97712 3.10034 3.26440 3.32695 3.37574 3.48286 3.60532 3.69109 3.69518 3.71988 3.84293 3.89467 3.92877 3.97524 4.05830 4.10325 4.17071 4.22349 4.35101 4.42062 4.50225 4.52721 4.54220 4.59334 4.65949 4.67616 4.72134 4.73937 4.77444 4.86313 4.89402 4.90136 5.00666 5.03315 5.07818 5.30443 5.33614 5.38697 5.42898 5.78185 5.85410 6.21598 6.27853 6.63334 6.80577 6.94423 7.11655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.041 4.041 3 Si 0.798 3.202 4 C -0.032 4.032 5 C -0.175 4.175 6 C -0.184 4.184 7 C 0.012 3.988 8 C -0.044 4.044 9 C -0.042 4.042 10 C -0.142 4.142 11 C 0.167 3.833 12 O -0.492 6.492 13 C -0.181 4.181 14 C 0.560 3.440 15 O -0.552 6.552 16 N -0.704 5.704 17 C 0.109 3.891 18 H 0.094 0.906 19 C -0.145 4.145 20 C -0.120 4.120 21 H 0.083 0.917 22 C 0.112 3.888 23 N -0.453 5.453 24 C -0.047 4.047 25 C -0.066 4.066 26 N -0.543 5.543 27 C 0.172 3.828 28 C -0.117 4.117 29 C -0.058 4.058 30 O -0.193 6.193 31 H 0.413 0.587 32 H 0.125 0.875 33 H -0.283 1.283 34 H -0.308 1.308 35 H 0.171 0.829 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.412 0.588 40 H 0.405 0.595 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.195 0.805 46 H 0.171 0.829 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.126 0.874 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -2.547 7.730 9.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.150 4.150 3 Si 0.703 3.297 4 C -0.081 4.081 5 C -0.194 4.194 6 C -0.202 4.202 7 C -0.037 4.037 8 C -0.044 4.044 9 C -0.060 4.060 10 C -0.160 4.160 11 C 0.121 3.879 12 O -0.306 6.306 13 C -0.184 4.184 14 C 0.348 3.652 15 O -0.431 6.431 16 N -0.356 5.356 17 C 0.004 3.996 18 H 0.113 0.887 19 C -0.184 4.184 20 C -0.139 4.139 21 H 0.101 0.899 22 C -0.009 4.009 23 N -0.135 5.135 24 C -0.181 4.181 25 C -0.213 4.213 26 N -0.262 5.262 27 C -0.110 4.110 28 C -0.155 4.155 29 C -0.077 4.077 30 O -0.092 6.092 31 H 0.266 0.734 32 H 0.142 0.858 33 H -0.210 1.210 34 H -0.236 1.236 35 H 0.188 0.812 36 H 0.200 0.800 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.273 0.727 40 H 0.242 0.758 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.212 0.788 46 H 0.188 0.812 47 H 0.244 0.756 48 H 0.104 0.896 49 H 0.144 0.856 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.964 -1.616 6.279 7.600 hybrid contribution 0.486 -0.827 -0.467 1.067 sum 4.450 -2.443 5.812 7.717 Atomic orbital electron populations 1.86410 1.16215 1.82576 1.52094 1.23972 0.86427 1.11883 0.92712 0.94319 0.77414 0.73912 0.84070 1.22086 0.98986 0.94120 0.92949 1.21849 1.03322 0.96078 0.98160 1.22234 1.00569 0.99386 0.98047 1.20590 1.03584 0.88652 0.90856 1.17760 0.99261 0.95041 0.92349 1.21455 0.94642 0.98837 0.91096 1.21630 0.99200 0.96825 0.98343 1.18854 0.93125 0.91387 0.84552 1.84708 1.24983 1.90605 1.30274 1.20268 1.05338 0.95282 0.97534 1.18213 0.80048 0.84190 0.82750 1.90802 1.40734 1.83736 1.27778 1.45600 1.53335 1.11016 1.25655 1.21963 0.96603 0.81415 0.99649 0.88743 1.23536 0.99194 0.99131 0.96490 1.22930 0.98791 0.95370 0.96854 0.89910 1.22223 0.77901 0.94305 1.06483 1.45749 1.11945 1.47100 1.08706 1.23074 0.94618 1.06765 0.93619 1.22612 0.97268 1.08533 0.92916 1.70235 1.25749 1.18923 1.11342 1.25515 0.84529 1.04123 0.96874 1.23302 0.96438 0.98834 0.96915 1.21278 0.94216 0.97061 0.95147 1.83918 1.56288 1.40254 1.28756 0.73359 0.85769 1.20950 1.23640 0.81166 0.80009 0.81289 0.81200 0.72680 0.75809 0.87223 0.93387 0.86161 0.86873 0.78844 0.81211 0.75562 0.89580 0.85606 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.10 12.85 -148.98 -1.91 -0.81 16 2 C -0.04 0.08 2.97 71.24 0.21 0.30 16 3 Si 0.80 -2.15 32.10 68.60 2.20 0.05 16 4 C -0.03 -0.16 6.25 24.87 0.16 -0.01 16 5 C -0.18 -0.57 10.77 22.13 0.24 -0.33 16 6 C -0.18 -0.38 10.26 22.41 0.23 -0.15 16 7 C 0.01 0.06 7.03 24.27 0.17 0.23 16 8 C -0.04 -0.13 5.87 -20.13 -0.12 -0.25 16 9 C -0.04 0.07 9.54 22.55 0.22 0.28 16 10 C -0.14 0.12 9.96 22.30 0.22 0.34 16 11 C 0.17 0.76 6.72 22.89 0.15 0.91 16 12 O -0.49 -2.91 11.55 -68.66 -0.79 -3.70 16 13 C -0.18 -1.04 5.88 -20.04 -0.12 -1.16 16 14 C 0.56 4.49 7.76 86.70 0.67 5.16 16 15 O -0.55 -7.97 14.74 17.00 0.25 -7.71 16 16 N -0.70 -1.35 5.21 -443.16 -2.31 -3.66 16 17 C 0.11 -0.13 4.32 45.52 0.20 0.07 16 18 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 19 C -0.14 0.35 7.43 31.12 0.23 0.59 16 20 C -0.12 0.77 3.84 -10.27 -0.04 0.73 16 21 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 22 C 0.11 -0.91 5.99 86.38 0.52 -0.40 16 23 N -0.45 0.19 2.75 -529.05 -1.46 -1.27 16 24 C -0.05 -0.11 11.58 83.09 0.96 0.85 16 25 C -0.07 -0.53 11.87 83.52 0.99 0.46 16 26 N -0.54 -6.07 11.25 -200.31 -2.25 -8.32 16 27 C 0.17 0.62 12.56 180.26 2.26 2.88 16 28 C -0.12 0.97 7.39 31.12 0.23 1.20 16 29 C -0.06 -0.22 9.20 22.79 0.21 -0.01 16 30 O -0.19 -1.49 8.78 -6.57 -0.06 -1.55 16 31 H 0.41 -5.51 8.74 -74.05 -0.65 -6.16 16 32 H 0.12 -1.02 7.96 -2.39 -0.02 -1.04 16 33 H -0.28 -0.60 7.11 99.48 0.71 0.11 16 34 H -0.31 -2.22 7.11 99.48 0.71 -1.51 16 35 H 0.17 -0.09 8.06 -2.91 -0.02 -0.11 16 36 H 0.18 -0.80 7.24 -2.91 -0.02 -0.82 16 37 H 0.17 -1.29 6.96 -2.91 -0.02 -1.31 16 38 H 0.17 -0.99 8.06 -2.91 -0.02 -1.01 16 39 H 0.41 -0.72 9.06 -74.06 -0.67 -1.40 16 40 H 0.41 -0.48 6.73 -92.71 -0.62 -1.10 16 41 H 0.11 -0.59 7.90 -2.39 -0.02 -0.61 16 42 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.12 -1.46 8.14 -2.39 -0.02 -1.48 16 44 H 0.11 -1.24 7.84 -2.38 -0.02 -1.25 16 45 H 0.19 -0.64 8.06 -2.91 -0.02 -0.66 16 46 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 47 H 0.23 -0.85 8.06 -2.91 -0.02 -0.88 16 48 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 49 H 0.13 -1.54 8.10 -2.38 -0.02 -1.56 16 50 H 0.13 0.26 6.24 -2.91 -0.02 0.24 16 Total: 0.00 -36.07 427.74 0.39 -35.68 By element: Atomic # 1 Polarization: -19.53 SS G_CDS: -0.88 Total: -20.40 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 7.60 Total: 11.70 kcal Atomic # 7 Polarization: -7.23 SS G_CDS: -6.02 Total: -13.25 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -2.51 Total: -13.77 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.20 Total: 0.05 kcal Total: -36.07 0.39 -35.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.872 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds