Wall clock time and date at job start Sun Mar 7 2021 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47010 * 2 1 4 4 C 1.50699 * 109.46938 * 119.99897 * 2 1 3 5 5 C 1.34184 * 126.54331 * 255.03876 * 4 2 1 6 6 N 1.36864 * 109.97265 * 179.97438 * 5 4 2 7 7 C 1.37408 * 109.98061 * 0.02562 * 6 5 4 8 8 C 1.39322 * 133.25329 * 179.97438 * 7 6 5 9 9 C 1.36359 * 120.23153 * 179.73219 * 8 7 6 10 10 C 1.40163 * 120.67215 * 0.52376 * 9 8 7 11 11 C 1.47655 * 119.97265 * 179.74983 * 10 9 8 12 12 O 1.21578 * 119.99704 * 179.72493 * 11 10 9 13 13 N 1.34776 * 120.00194 * 359.72642 * 11 10 9 14 14 C 1.46492 * 120.00221 * 179.97438 * 13 11 10 15 15 H 1.09009 * 112.90751 * 336.25072 * 14 13 11 16 16 C 1.53954 * 113.53996 * 107.50248 * 14 13 11 17 17 C 1.53788 * 87.01667 * 89.19185 * 16 14 13 18 18 H 1.09002 * 113.61236 * 270.76916 * 17 16 14 19 19 C 1.52999 * 113.61514 * 139.95431 * 17 16 14 20 20 N 1.46500 * 109.46933 * 85.85880 * 19 17 16 21 21 C 1.36880 * 126.40231 * 270.02423 * 20 19 17 22 22 C 1.34663 * 106.81873 * 180.02562 * 21 20 19 23 23 N 1.34120 * 108.02403 * 0.02562 * 22 21 20 24 24 C 1.30504 * 109.25474 * 359.97438 * 23 22 21 25 25 C 1.53784 * 87.17409 * 25.36366 * 17 16 14 26 26 C 1.39188 * 120.05097 * 359.48016 * 10 9 8 27 27 C 1.39225 * 119.39757 * 0.24779 * 26 10 9 28 28 H 0.96704 * 114.00165 * 299.99545 * 1 2 3 29 29 H 1.08998 * 109.46777 * 239.99787 * 2 1 3 30 30 H 1.48495 * 109.99906 * 300.00181 * 3 2 1 31 31 H 1.48506 * 109.99985 * 61.31965 * 3 2 1 32 32 H 1.08000 * 125.01339 * 359.93496 * 5 4 2 33 33 H 0.97002 * 125.01273 * 180.02562 * 6 5 4 34 34 H 1.07991 * 119.88141 * 359.97438 * 8 7 6 35 35 H 1.08005 * 119.66077 * 180.25429 * 9 8 7 36 36 H 0.97004 * 119.99772 * 359.97438 * 13 11 10 37 37 H 1.08998 * 113.66630 * 334.66338 * 16 14 13 38 38 H 1.09000 * 113.61285 * 203.70652 * 16 14 13 39 39 H 1.09004 * 109.46662 * 325.86062 * 19 17 16 40 40 H 1.08999 * 109.46962 * 205.86040 * 19 17 16 41 41 H 1.08005 * 126.58721 * 359.97438 * 21 20 19 42 42 H 1.08009 * 125.98602 * 180.02562 * 22 21 20 43 43 H 1.08001 * 125.64551 * 179.73478 * 24 23 22 44 44 H 1.08994 * 113.61766 * 89.15670 * 25 17 16 45 45 H 1.08998 * 113.60893 * 219.97983 * 25 17 16 46 46 H 1.08004 * 120.29926 * 180.23276 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4600 -0.1387 2.3232 6 7 2.8017 -1.1004 3.2351 7 6 2.4952 -2.3456 2.7414 8 6 2.6346 -3.6351 3.2502 9 6 2.2266 -4.7101 2.5172 10 6 1.6730 -4.5370 1.2413 11 6 1.2414 -5.7124 0.4587 12 8 0.7565 -5.5624 -0.6460 13 7 1.3850 -6.9515 0.9691 14 6 0.9563 -8.1176 0.1930 15 1 0.1956 -7.8767 -0.5497 16 6 2.1260 -8.9471 -0.3673 17 6 2.0863 -9.7429 0.9481 18 1 2.7141 -9.3208 1.7329 19 6 2.2993 -11.2465 0.7615 20 7 3.7348 -11.5386 0.7498 21 6 4.5502 -11.5618 -0.3493 22 6 5.7853 -11.8722 0.0882 23 7 5.7257 -12.0348 1.4182 24 6 4.5006 -11.8363 1.8216 25 6 0.6065 -9.3394 1.0590 26 6 1.5245 -3.2576 0.7136 27 6 1.9351 -2.1578 1.4621 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5614 2.4678 -1.2084 31 1 1.5878 2.4586 1.2243 32 1 2.5964 0.9236 2.4624 33 1 3.2013 -0.9284 4.1021 34 1 3.0636 -3.7834 4.2301 35 1 2.3352 -5.7054 2.9223 36 1 1.7722 -7.0711 1.8505 37 1 3.0431 -8.3740 -0.5034 38 1 1.8613 -9.5388 -1.2436 39 1 1.8567 -11.5615 -0.1836 40 1 1.8254 -11.7851 1.5821 41 1 4.2587 -11.3690 -1.3713 42 1 6.6691 -11.9727 -0.5246 43 1 4.1554 -11.9039 2.8427 44 1 -0.0742 -10.0383 0.5733 45 1 0.2985 -9.0838 2.0728 46 1 1.0950 -3.1193 -0.2676 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:08 Heat of formation + Delta-G solvation = 90.735783 kcal Electronic energy + Delta-G solvation = -29746.251233 eV Core-core repulsion = 25605.047347 eV Total energy + Delta-G solvation = -4141.203886 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.92530 -42.48970 -41.32507 -39.63295 -38.05551 -37.48049 -35.40293 -33.91635 -33.30108 -30.92744 -30.53992 -30.34826 -28.68369 -26.73007 -26.51153 -25.30178 -23.83222 -23.51267 -22.23181 -21.82189 -21.76093 -20.82880 -20.32390 -19.40773 -18.61432 -18.20318 -17.60636 -17.39125 -17.02060 -16.51205 -16.32594 -16.12102 -15.97035 -15.66536 -15.41717 -15.16707 -15.04184 -14.88752 -14.82900 -14.77016 -14.60569 -14.17560 -14.12034 -13.79113 -13.73839 -13.58746 -13.43877 -12.80035 -12.61124 -12.52840 -12.33226 -12.16931 -11.81061 -11.70271 -11.34646 -11.14802 -10.89311 -10.83511 -10.49664 -10.45129 -10.16605 -9.42287 -9.35867 -8.84153 -4.87633 -0.18864 0.17341 1.18726 1.34113 1.49442 1.60341 1.78591 1.95518 1.99786 2.03781 2.10191 2.25807 2.84750 3.39542 3.48819 3.50695 3.58575 3.66588 3.73456 3.81345 3.81437 3.88866 3.91930 4.05951 4.10799 4.19468 4.28346 4.34555 4.44025 4.49024 4.55358 4.58261 4.61124 4.69543 4.75768 4.77367 4.81603 4.84522 4.97957 4.98955 5.01522 5.15495 5.23812 5.31342 5.38239 5.44993 5.55329 5.56997 5.84710 5.95626 6.35809 6.44794 6.53922 6.60064 7.13750 7.18977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.063 4.063 3 Si 0.787 3.213 4 C -0.216 4.216 5 C 0.082 3.918 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.125 4.125 9 C -0.067 4.067 10 C -0.180 4.180 11 C 0.562 3.438 12 O -0.587 6.587 13 N -0.695 5.695 14 C 0.106 3.894 15 H 0.082 0.918 16 C -0.146 4.146 17 C -0.114 4.114 18 H 0.097 0.903 19 C 0.110 3.890 20 N -0.451 5.451 21 C -0.047 4.047 22 C -0.067 4.067 23 N -0.545 5.545 24 C 0.175 3.825 25 C -0.117 4.117 26 C -0.021 4.021 27 C -0.128 4.128 28 H 0.384 0.616 29 H 0.099 0.901 30 H -0.311 1.311 31 H -0.258 1.258 32 H 0.210 0.790 33 H 0.439 0.561 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.414 0.586 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.192 0.808 42 H 0.169 0.831 43 H 0.230 0.770 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 1.528 7.957 8.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.171 4.171 3 Si 0.690 3.310 4 C -0.223 4.223 5 C -0.046 4.046 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.146 4.146 9 C -0.087 4.087 10 C -0.185 4.185 11 C 0.352 3.648 12 O -0.469 6.469 13 N -0.347 5.347 14 C 0.001 3.999 15 H 0.101 0.899 16 C -0.185 4.185 17 C -0.133 4.133 18 H 0.115 0.885 19 C -0.011 4.011 20 N -0.133 5.133 21 C -0.181 4.181 22 C -0.214 4.214 23 N -0.264 5.264 24 C -0.107 4.107 25 C -0.155 4.155 26 C -0.041 4.041 27 C -0.132 4.132 28 H 0.233 0.767 29 H 0.117 0.883 30 H -0.239 1.239 31 H -0.183 1.183 32 H 0.226 0.774 33 H 0.280 0.720 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.252 0.748 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.209 0.791 42 H 0.186 0.814 43 H 0.246 0.754 44 H 0.135 0.865 45 H 0.111 0.889 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.535 1.994 7.284 7.571 hybrid contribution -1.394 0.048 -0.010 1.395 sum -0.860 2.042 7.274 7.603 Atomic orbital electron populations 1.86599 1.19356 1.80632 1.49917 1.24767 0.82756 1.12443 0.97088 0.94076 0.89651 0.70010 0.77278 1.20760 1.11178 0.91451 0.98942 1.22178 0.98431 0.95725 0.88266 1.41771 1.53792 1.03162 1.18723 1.18630 0.99676 0.87856 0.93617 1.20061 1.04295 0.88033 1.02169 1.20853 0.96005 1.00145 0.91662 1.19570 1.09200 0.92226 0.97455 1.18488 0.77104 0.84061 0.85160 1.90765 1.46861 1.86794 1.22457 1.45422 1.63542 1.04382 1.21340 1.21961 0.97518 0.85024 0.95401 0.89948 1.23552 0.98295 0.98403 0.98250 1.22920 0.98177 0.93869 0.98309 0.88518 1.22221 0.76279 0.96055 1.06506 1.45734 1.10275 1.50386 1.06922 1.23038 0.91408 1.09584 0.94109 1.22583 0.98467 1.08657 0.91667 1.70239 1.21025 1.22166 1.12998 1.25539 0.86293 1.03500 0.95416 1.23274 0.95470 0.95218 1.01530 1.20596 0.94349 0.90737 0.98370 1.19194 1.05114 0.93544 0.95371 0.76680 0.88273 1.23926 1.18348 0.77398 0.71990 0.82107 0.82414 0.74791 0.92919 0.88069 0.87485 0.86179 0.79087 0.81370 0.75356 0.86478 0.88903 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.73 12.88 -148.98 -1.92 -5.65 16 2 C -0.06 -0.16 3.06 71.24 0.22 0.06 16 3 Si 0.79 -2.40 30.82 68.60 2.11 -0.29 16 4 C -0.22 -0.36 5.58 -18.61 -0.10 -0.47 16 5 C 0.08 -0.42 10.43 82.98 0.87 0.44 16 6 N -0.57 3.49 6.05 -187.48 -1.13 2.35 16 7 C 0.11 0.00 7.27 39.19 0.28 0.28 16 8 C -0.13 0.41 10.00 22.09 0.22 0.63 16 9 C -0.07 0.12 9.46 22.30 0.21 0.33 16 10 C -0.18 -1.10 5.87 -20.09 -0.12 -1.21 16 11 C 0.56 4.80 7.76 86.73 0.67 5.47 16 12 O -0.59 -10.58 15.93 -3.96 -0.06 -10.65 16 13 N -0.70 0.22 5.21 -442.80 -2.31 -2.09 16 14 C 0.11 -0.20 4.33 45.58 0.20 0.00 16 15 H 0.08 0.30 7.47 -2.38 -0.02 0.28 16 16 C -0.15 0.55 7.44 31.18 0.23 0.78 16 17 C -0.11 1.02 3.83 -10.26 -0.04 0.98 16 18 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 19 C 0.11 -1.07 5.98 86.38 0.52 -0.56 16 20 N -0.45 1.01 2.75 -529.06 -1.46 -0.44 16 21 C -0.05 -0.05 11.58 83.09 0.96 0.92 16 22 C -0.07 -0.44 11.87 83.52 0.99 0.55 16 23 N -0.55 -5.14 11.25 -200.31 -2.25 -7.39 16 24 C 0.18 0.26 12.56 180.26 2.26 2.52 16 25 C -0.12 1.14 7.39 31.12 0.23 1.37 16 26 C -0.02 -0.21 9.64 22.74 0.22 0.01 16 27 C -0.13 -0.75 6.34 -20.21 -0.13 -0.87 16 28 H 0.38 -0.20 8.70 -74.05 -0.64 -0.84 16 29 H 0.10 0.46 7.96 -2.39 -0.02 0.44 16 30 H -0.31 -1.93 7.11 99.48 0.71 -1.22 16 31 H -0.26 0.83 7.00 99.48 0.70 1.52 16 32 H 0.21 -2.55 6.27 -2.91 -0.02 -2.57 16 33 H 0.44 -5.75 8.96 -92.71 -0.83 -6.58 16 34 H 0.16 -1.62 8.06 -2.92 -0.02 -1.64 16 35 H 0.16 -1.44 6.36 -2.91 -0.02 -1.46 16 36 H 0.41 -2.78 6.70 -92.71 -0.62 -3.40 16 37 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.10 -0.54 7.92 -2.39 -0.02 -0.56 16 39 H 0.11 -1.22 7.88 -2.38 -0.02 -1.24 16 40 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 41 H 0.19 -0.80 8.06 -2.91 -0.02 -0.82 16 42 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.23 -1.40 8.06 -2.91 -0.02 -1.43 16 44 H 0.12 -1.45 8.10 -2.39 -0.02 -1.47 16 45 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.11 1.58 7.64 -2.91 -0.02 1.56 16 Total: 0.00 -34.83 388.17 -0.34 -35.17 By element: Atomic # 1 Polarization: -21.25 SS G_CDS: -1.02 Total: -22.27 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 7.70 Total: 11.24 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -7.15 Total: -7.57 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.98 Total: -16.30 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.11 Total: -0.29 kcal Total: -34.83 -0.34 -35.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.909 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds