Wall clock time and date at job start Sun Mar 7 2021 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47439 * 2 1 4 4 C 1.50697 * 109.46828 * 120.00003 * 2 1 3 5 5 C 1.38584 * 120.32786 * 65.02144 * 4 2 1 6 6 C 1.38630 * 118.49198 * 179.71036 * 5 4 2 7 7 C 1.39270 * 119.05841 * 0.52704 * 6 5 4 8 8 C 1.48170 * 119.72493 * 179.73682 * 7 6 5 9 9 O 1.21524 * 119.99681 * 359.72952 * 8 7 6 10 10 N 1.34774 * 120.00552 * 179.72669 * 8 7 6 11 11 C 1.46496 * 120.00099 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.91109 * 23.75176 * 11 10 8 13 13 C 1.53787 * 113.61210 * 155.00440 * 11 10 8 14 14 C 1.53778 * 87.08035 * 89.11438 * 13 11 10 15 15 H 1.09004 * 113.61682 * 270.87724 * 14 13 11 16 16 C 1.53001 * 113.61263 * 139.98349 * 14 13 11 17 17 N 1.46505 * 109.47164 * 174.99956 * 16 14 13 18 18 C 1.36871 * 126.39767 * 89.99950 * 17 16 14 19 19 C 1.34670 * 106.81724 * 180.02562 * 18 17 16 20 20 N 1.34127 * 108.01943 * 359.97438 * 19 18 17 21 21 C 1.30502 * 109.25751 * 359.73426 * 20 19 18 22 22 C 1.53778 * 87.08449 * 25.43264 * 14 13 11 23 23 N 1.32742 * 120.55649 * 359.45853 * 7 6 5 24 24 C 1.31492 * 121.64272 * 0.27821 * 23 7 6 25 25 H 0.96702 * 114.00193 * 59.99846 * 1 2 3 26 26 H 1.08994 * 109.46960 * 239.99520 * 2 1 3 27 27 H 1.48504 * 109.99985 * 59.99718 * 3 2 1 28 28 H 1.48494 * 109.99902 * 181.31752 * 3 2 1 29 29 H 1.08000 * 120.75349 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.47760 * 180.28714 * 6 5 4 31 31 H 0.97002 * 119.99411 * 0.02562 * 10 8 7 32 32 H 1.08998 * 113.61103 * 203.66698 * 13 11 10 33 33 H 1.08999 * 113.61167 * 334.56160 * 13 11 10 34 34 H 1.09008 * 109.46870 * 294.99672 * 16 14 13 35 35 H 1.09000 * 109.47055 * 54.99500 * 16 14 13 36 36 H 1.08005 * 126.59441 * 0.03544 * 18 17 16 37 37 H 1.08002 * 125.99001 * 180.02562 * 19 18 17 38 38 H 1.07990 * 125.65225 * 180.29092 * 21 20 19 39 39 H 1.08993 * 113.61229 * 220.02023 * 22 14 13 40 40 H 1.09000 * 113.61263 * 89.11673 * 22 14 13 41 41 H 1.08001 * 119.55568 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6882 -2.0635 1.4055 6 6 2.1730 -2.6800 2.5486 7 6 2.8739 -1.9199 3.4817 8 6 3.3934 -2.5626 4.7115 9 8 3.2030 -3.7471 4.9050 10 7 4.0772 -1.8335 5.6156 11 6 4.5904 -2.4689 6.8317 12 1 4.7321 -3.5440 6.7215 13 6 5.8049 -1.7466 7.4386 14 6 4.8018 -0.9002 8.2401 15 1 4.4778 0.0014 7.7202 16 6 5.2403 -0.6317 9.6811 17 7 4.2844 0.2754 10.3214 18 6 3.1627 -0.0863 11.0175 19 6 2.5770 1.0534 11.4318 20 7 3.3211 2.0828 11.0009 21 6 4.3487 1.6241 10.3401 22 6 3.8205 -2.0763 8.1038 23 7 3.0852 -0.6257 3.2759 24 6 2.6413 -0.0170 2.1981 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 1.5616 2.4679 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 1.1375 -2.6258 0.6660 30 1 2.0061 -3.7340 2.7152 31 1 4.2289 -0.8880 5.4613 32 1 6.4291 -2.3887 8.0601 33 1 6.3789 -1.1717 6.7120 34 1 5.2739 -1.5718 10.2318 35 1 6.2301 -0.1752 9.6807 36 1 2.8144 -1.0922 11.1997 37 1 1.6679 1.1258 12.0104 38 1 5.1210 2.2239 9.8818 39 1 2.7926 -1.7674 7.9141 40 1 3.9022 -2.8084 8.9071 41 1 2.8329 1.0374 2.0648 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:13 Heat of formation + Delta-G solvation = 72.287647 kcal Electronic energy + Delta-G solvation = -25068.662087 eV Core-core repulsion = 21338.648130 eV Total energy + Delta-G solvation = -3730.013957 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.92691 -41.98716 -40.99371 -39.40683 -37.94493 -35.46838 -34.35141 -33.47382 -33.06696 -30.37270 -29.10497 -27.79962 -26.97192 -25.15346 -24.67445 -23.59526 -22.21781 -22.05294 -21.81706 -20.45932 -19.42842 -18.70572 -18.38415 -18.22572 -17.11759 -16.93226 -16.65549 -16.30918 -16.19140 -16.01213 -15.46251 -15.34073 -14.99513 -14.90942 -14.82903 -14.58879 -14.40739 -14.20044 -14.09101 -14.00684 -13.86214 -13.67385 -12.97276 -12.60581 -12.52615 -12.20694 -11.87779 -11.57694 -11.45823 -11.13019 -10.86001 -10.80352 -10.57768 -10.46475 -10.34160 -10.13512 -9.37300 -5.16530 -0.64631 -0.01991 1.04801 1.18731 1.44920 1.54871 1.76647 1.83250 1.85747 2.36334 2.58133 2.81952 3.12603 3.14618 3.24872 3.43744 3.48317 3.55877 3.58965 3.67741 3.80489 3.84371 3.87674 3.98402 4.05158 4.09842 4.17986 4.24920 4.42821 4.45247 4.45940 4.58691 4.60129 4.74643 4.78612 4.82120 4.87115 4.88612 4.94935 5.26533 5.36647 5.40758 5.88750 6.21517 6.29562 6.39518 6.52451 7.03429 7.23931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.072 4.072 3 Si 0.685 3.315 4 C -0.103 4.103 5 C -0.050 4.050 6 C -0.105 4.105 7 C 0.077 3.923 8 C 0.578 3.422 9 O -0.525 6.525 10 N -0.695 5.695 11 C 0.119 3.881 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.130 4.130 15 H 0.098 0.902 16 C 0.114 3.886 17 N -0.457 5.457 18 C -0.054 4.054 19 C -0.031 4.031 20 N -0.496 5.496 21 C 0.179 3.821 22 C -0.145 4.145 23 N -0.453 5.453 24 C 0.099 3.901 25 H 0.387 0.613 26 H 0.082 0.918 27 H -0.245 1.245 28 H -0.250 1.250 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.412 0.588 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.202 0.798 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 0.032 -5.898 6.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.183 4.183 3 Si 0.585 3.415 4 C -0.105 4.105 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.061 4.061 8 C 0.363 3.637 9 O -0.400 6.400 10 N -0.346 5.346 11 C 0.014 3.986 12 H 0.127 0.873 13 C -0.174 4.174 14 C -0.149 4.149 15 H 0.117 0.883 16 C -0.009 4.009 17 N -0.140 5.140 18 C -0.186 4.186 19 C -0.179 4.179 20 N -0.213 5.213 21 C -0.104 4.104 22 C -0.184 4.184 23 N -0.164 5.164 24 C -0.060 4.060 25 H 0.235 0.765 26 H 0.100 0.900 27 H -0.170 1.170 28 H -0.174 1.174 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.249 0.751 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.219 0.781 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.973 0.633 -4.019 5.039 hybrid contribution -0.246 -1.340 -0.757 1.559 sum 2.727 -0.708 -4.776 5.545 Atomic orbital electron populations 1.86487 1.16618 1.81947 1.50027 1.24632 0.86245 1.10812 0.96651 0.94889 0.81053 0.77701 0.87850 1.20655 0.98412 0.95149 0.96278 1.21560 0.95464 0.93647 0.96915 1.22237 0.95082 1.02366 0.92884 1.21126 0.98916 0.90201 0.95812 1.17812 0.77957 0.85891 0.82048 1.90821 1.57482 1.14737 1.76956 1.45478 1.55291 1.13766 1.20047 1.21845 0.94320 0.98912 0.83565 0.87256 1.23334 0.96163 0.98715 0.99188 1.23071 0.98144 0.98873 0.94787 0.88348 1.21961 0.91873 0.94285 0.92754 1.45575 1.20385 1.07693 1.40349 1.22733 0.91285 1.01158 1.03469 1.22348 1.02012 0.88054 1.05502 1.70310 1.04868 1.32094 1.14074 1.25017 1.00647 0.81099 1.03602 1.23518 0.99434 0.97404 0.98030 1.67484 1.18305 1.09607 1.20958 1.22453 0.95139 0.99427 0.89022 0.76451 0.89990 1.16985 1.17421 0.83194 0.82702 0.75146 0.87900 0.90044 0.88661 0.88495 0.81083 0.81435 0.78106 0.90694 0.88629 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.80 12.82 -35.23 -0.45 0.35 16 2 C -0.07 0.14 2.81 36.00 0.10 0.24 16 3 Si 0.68 -1.85 29.87 -169.99 -5.08 -6.93 16 4 C -0.10 -0.09 5.40 -104.36 -0.56 -0.65 16 5 C -0.05 -0.03 9.83 -39.31 -0.39 -0.42 16 6 C -0.11 -0.18 9.63 -39.05 -0.38 -0.56 16 7 C 0.08 0.22 6.75 -83.01 -0.56 -0.34 16 8 C 0.58 1.90 7.81 -12.18 -0.10 1.81 16 9 O -0.52 -3.07 15.92 5.34 0.09 -2.98 16 10 N -0.69 -0.48 5.25 -53.85 -0.28 -0.76 16 11 C 0.12 -0.10 4.32 -67.12 -0.29 -0.39 16 12 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 13 C -0.14 0.47 7.39 -25.92 -0.19 0.28 16 14 C -0.13 0.37 3.84 -89.81 -0.34 0.03 16 15 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 16 C 0.11 -0.36 5.99 -4.04 -0.02 -0.38 16 17 N -0.46 -0.04 2.75 -118.57 -0.33 -0.37 16 18 C -0.05 -0.06 11.58 -16.57 -0.19 -0.25 16 19 C -0.03 -0.10 11.87 -17.81 -0.21 -0.31 16 20 N -0.50 -2.49 11.25 -14.67 -0.17 -2.65 16 21 C 0.18 0.32 12.56 -90.37 -1.14 -0.81 16 22 C -0.15 0.23 7.43 -25.92 -0.19 0.04 16 23 N -0.45 -1.22 9.54 -9.80 -0.09 -1.31 16 24 C 0.10 0.18 9.84 -17.56 -0.17 0.01 16 25 H 0.39 -2.50 8.74 45.56 0.40 -2.10 16 26 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 27 H -0.25 -0.12 7.05 56.52 0.40 0.28 16 28 H -0.25 0.09 7.11 56.52 0.40 0.49 16 29 H 0.15 -0.23 8.06 -52.49 -0.42 -0.65 16 30 H 0.16 0.14 7.64 -52.49 -0.40 -0.26 16 31 H 0.41 -0.09 8.03 -40.82 -0.33 -0.42 16 32 H 0.10 -0.49 8.10 -51.93 -0.42 -0.91 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 34 H 0.10 -0.39 7.84 -51.92 -0.41 -0.80 16 35 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 36 H 0.17 -0.25 8.06 -52.48 -0.42 -0.67 16 37 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.20 -0.28 8.06 -52.49 -0.42 -0.71 16 39 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.10 -0.25 7.90 -51.93 -0.41 -0.66 16 41 H 0.16 0.11 4.88 -52.49 -0.26 -0.15 16 LS Contribution 351.98 15.07 5.30 5.30 Total: 0.00 -10.55 351.98 -10.85 -21.41 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -5.21 Total: -10.34 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -4.64 Total: -1.71 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -0.87 Total: -5.10 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -0.37 Total: -2.64 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -5.08 Total: -6.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -10.55 -10.85 -21.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.694 kcal (2) G-P(sol) polarization free energy of solvation -10.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds