Wall clock time and date at job start Sun Mar 7 2021 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47439 * 2 1 4 4 C 1.50697 * 109.46828 * 120.00003 * 2 1 3 5 5 C 1.38584 * 120.32786 * 65.02144 * 4 2 1 6 6 C 1.38630 * 118.49198 * 179.71036 * 5 4 2 7 7 C 1.39270 * 119.05841 * 0.52704 * 6 5 4 8 8 C 1.48170 * 119.72493 * 179.73682 * 7 6 5 9 9 O 1.21524 * 119.99681 * 359.72952 * 8 7 6 10 10 N 1.34774 * 120.00552 * 179.72669 * 8 7 6 11 11 C 1.46496 * 120.00099 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.91109 * 23.75176 * 11 10 8 13 13 C 1.53787 * 113.61210 * 155.00440 * 11 10 8 14 14 C 1.53778 * 87.08035 * 89.11438 * 13 11 10 15 15 H 1.09004 * 113.61682 * 270.87724 * 14 13 11 16 16 C 1.53001 * 113.61263 * 139.98349 * 14 13 11 17 17 N 1.46505 * 109.47164 * 174.99956 * 16 14 13 18 18 C 1.36871 * 126.39767 * 89.99950 * 17 16 14 19 19 C 1.34670 * 106.81724 * 180.02562 * 18 17 16 20 20 N 1.34127 * 108.01943 * 359.97438 * 19 18 17 21 21 C 1.30502 * 109.25751 * 359.73426 * 20 19 18 22 22 C 1.53778 * 87.08449 * 25.43264 * 14 13 11 23 23 N 1.32742 * 120.55649 * 359.45853 * 7 6 5 24 24 C 1.31492 * 121.64272 * 0.27821 * 23 7 6 25 25 H 0.96702 * 114.00193 * 59.99846 * 1 2 3 26 26 H 1.08994 * 109.46960 * 239.99520 * 2 1 3 27 27 H 1.48504 * 109.99985 * 59.99718 * 3 2 1 28 28 H 1.48494 * 109.99902 * 181.31752 * 3 2 1 29 29 H 1.08000 * 120.75349 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.47760 * 180.28714 * 6 5 4 31 31 H 0.97002 * 119.99411 * 0.02562 * 10 8 7 32 32 H 1.08998 * 113.61103 * 203.66698 * 13 11 10 33 33 H 1.08999 * 113.61167 * 334.56160 * 13 11 10 34 34 H 1.09008 * 109.46870 * 294.99672 * 16 14 13 35 35 H 1.09000 * 109.47055 * 54.99500 * 16 14 13 36 36 H 1.08005 * 126.59441 * 0.03544 * 18 17 16 37 37 H 1.08002 * 125.99001 * 180.02562 * 19 18 17 38 38 H 1.07990 * 125.65225 * 180.29092 * 21 20 19 39 39 H 1.08993 * 113.61229 * 220.02023 * 22 14 13 40 40 H 1.09000 * 113.61263 * 89.11673 * 22 14 13 41 41 H 1.08001 * 119.55568 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6882 -2.0635 1.4055 6 6 2.1730 -2.6800 2.5486 7 6 2.8739 -1.9199 3.4817 8 6 3.3934 -2.5626 4.7115 9 8 3.2030 -3.7471 4.9050 10 7 4.0772 -1.8335 5.6156 11 6 4.5904 -2.4689 6.8317 12 1 4.7321 -3.5440 6.7215 13 6 5.8049 -1.7466 7.4386 14 6 4.8018 -0.9002 8.2401 15 1 4.4778 0.0014 7.7202 16 6 5.2403 -0.6317 9.6811 17 7 4.2844 0.2754 10.3214 18 6 3.1627 -0.0863 11.0175 19 6 2.5770 1.0534 11.4318 20 7 3.3211 2.0828 11.0009 21 6 4.3487 1.6241 10.3401 22 6 3.8205 -2.0763 8.1038 23 7 3.0852 -0.6257 3.2759 24 6 2.6413 -0.0170 2.1981 25 1 -0.3934 0.4417 -0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 1.5616 2.4679 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 1.1375 -2.6258 0.6660 30 1 2.0061 -3.7340 2.7152 31 1 4.2289 -0.8880 5.4613 32 1 6.4291 -2.3887 8.0601 33 1 6.3789 -1.1717 6.7120 34 1 5.2739 -1.5718 10.2318 35 1 6.2301 -0.1752 9.6807 36 1 2.8144 -1.0922 11.1997 37 1 1.6679 1.1258 12.0104 38 1 5.1210 2.2239 9.8818 39 1 2.7926 -1.7674 7.9141 40 1 3.9022 -2.8084 8.9071 41 1 2.8329 1.0374 2.0648 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:12 Heat of formation + Delta-G solvation = 71.298448 kcal Electronic energy + Delta-G solvation = -25068.704982 eV Core-core repulsion = 21338.648130 eV Total energy + Delta-G solvation = -3730.056852 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.98007 -42.09501 -40.99790 -39.48867 -37.81610 -35.52400 -34.40420 -33.55275 -33.13795 -30.45481 -29.06481 -27.77717 -26.79889 -25.23775 -24.63481 -23.58443 -22.30308 -22.15445 -21.83988 -20.41074 -19.51079 -18.58929 -18.36035 -18.23412 -17.13090 -16.89888 -16.63792 -16.46990 -16.28085 -15.97675 -15.41256 -15.33954 -15.02110 -14.95148 -14.84776 -14.62914 -14.42224 -14.22518 -14.09082 -13.99002 -13.78712 -13.50223 -12.82677 -12.55641 -12.41604 -12.16091 -11.82974 -11.64620 -11.42181 -11.20261 -10.97683 -10.94208 -10.62402 -10.51196 -10.30474 -10.16868 -9.47260 -4.97960 -0.76159 -0.11203 1.13239 1.22488 1.35769 1.63616 1.78024 1.90607 1.92260 2.20364 2.46509 2.72651 3.21293 3.31889 3.40551 3.41868 3.54388 3.65034 3.70128 3.71736 3.81877 3.86318 4.00189 4.08361 4.13497 4.21634 4.27354 4.44158 4.45688 4.55963 4.59664 4.68847 4.70472 4.75957 4.77735 4.84848 4.91165 4.93760 5.06242 5.20675 5.32546 5.43313 5.80079 6.08587 6.29830 6.40393 6.85658 6.87498 7.13524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.075 4.075 3 Si 0.771 3.229 4 C -0.108 4.108 5 C -0.049 4.049 6 C -0.111 4.111 7 C 0.057 3.943 8 C 0.573 3.427 9 O -0.559 6.559 10 N -0.686 5.686 11 C 0.104 3.896 12 H 0.096 0.904 13 C -0.116 4.116 14 C -0.119 4.119 15 H 0.085 0.915 16 C 0.112 3.888 17 N -0.452 5.452 18 C -0.046 4.046 19 C -0.068 4.068 20 N -0.546 5.546 21 C 0.173 3.827 22 C -0.144 4.144 23 N -0.463 5.463 24 C 0.081 3.919 25 H 0.409 0.591 26 H 0.110 0.890 27 H -0.294 1.294 28 H -0.282 1.282 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.196 0.804 37 H 0.171 0.829 38 H 0.227 0.773 39 H 0.049 0.951 40 H 0.111 0.889 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -0.410 -6.881 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.186 4.186 3 Si 0.677 3.323 4 C -0.111 4.111 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.080 4.080 8 C 0.359 3.641 9 O -0.438 6.438 10 N -0.336 5.336 11 C -0.001 4.001 12 H 0.114 0.886 13 C -0.154 4.154 14 C -0.138 4.138 15 H 0.104 0.896 16 C -0.009 4.009 17 N -0.134 5.134 18 C -0.180 4.180 19 C -0.215 4.215 20 N -0.265 5.265 21 C -0.110 4.110 22 C -0.182 4.182 23 N -0.174 5.174 24 C -0.078 4.078 25 H 0.261 0.739 26 H 0.128 0.872 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.192 0.808 30 H 0.176 0.824 31 H 0.253 0.747 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.213 0.787 37 H 0.188 0.812 38 H 0.244 0.756 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.805 0.199 -5.030 6.310 hybrid contribution -0.516 -1.170 -0.460 1.359 sum 3.288 -0.971 -5.490 6.473 Atomic orbital electron populations 1.86436 1.16530 1.82529 1.51796 1.24738 0.86446 1.11118 0.96278 0.93984 0.77788 0.75334 0.85225 1.21036 0.97604 0.95496 0.96921 1.21853 0.95021 0.93724 0.96817 1.22396 0.94919 1.02603 0.93204 1.21184 1.00056 0.90536 0.96237 1.17985 0.77960 0.85641 0.82549 1.90787 1.59141 1.16004 1.77834 1.45509 1.54185 1.13814 1.20048 1.22058 0.96305 0.98530 0.83204 0.88561 1.23292 0.95151 0.98166 0.98840 1.22920 0.97769 0.97876 0.95212 0.89626 1.22227 0.91945 0.94680 0.92062 1.45750 1.20383 1.07603 1.39661 1.23080 0.91050 1.01534 1.02339 1.22613 1.02930 0.88845 1.07066 1.70235 1.06558 1.33716 1.15966 1.25500 1.00419 0.82122 1.02946 1.23535 0.98191 0.98439 0.98038 1.67421 1.18787 1.09634 1.21576 1.22700 0.95848 0.99859 0.89409 0.73904 0.87190 1.22144 1.20876 0.80821 0.82369 0.74679 0.85627 0.89586 0.86875 0.86293 0.78723 0.81222 0.75633 0.93192 0.87075 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.45 12.82 -148.98 -1.91 0.54 16 2 C -0.08 0.37 2.81 71.23 0.20 0.57 16 3 Si 0.77 -4.28 29.87 68.60 2.05 -2.23 16 4 C -0.11 -0.18 5.40 -19.69 -0.11 -0.29 16 5 C -0.05 -0.05 9.83 22.45 0.22 0.17 16 6 C -0.11 -0.50 9.63 22.61 0.22 -0.28 16 7 C 0.06 0.43 6.75 41.90 0.28 0.71 16 8 C 0.57 4.89 7.81 86.88 0.68 5.57 16 9 O -0.56 -7.77 15.92 -3.79 -0.06 -7.83 16 10 N -0.69 -1.90 5.25 -442.59 -2.32 -4.22 16 11 C 0.10 -0.13 4.32 45.52 0.20 0.06 16 12 H 0.10 0.16 7.46 -2.39 -0.02 0.14 16 13 C -0.12 0.96 7.39 31.12 0.23 1.19 16 14 C -0.12 0.79 3.84 -10.27 -0.04 0.75 16 15 H 0.09 -0.30 8.14 -2.38 -0.02 -0.31 16 16 C 0.11 -0.92 5.99 86.38 0.52 -0.41 16 17 N -0.45 0.23 2.75 -529.05 -1.46 -1.23 16 18 C -0.05 -0.10 11.58 83.09 0.96 0.87 16 19 C -0.07 -0.54 11.87 83.52 0.99 0.45 16 20 N -0.55 -6.21 11.25 -200.31 -2.25 -8.46 16 21 C 0.17 0.64 12.56 180.26 2.26 2.91 16 22 C -0.14 0.44 7.43 31.12 0.23 0.67 16 23 N -0.46 -3.22 9.54 -184.90 -1.76 -4.99 16 24 C 0.08 0.39 9.84 84.83 0.83 1.22 16 25 H 0.41 -6.05 8.74 -74.06 -0.65 -6.69 16 26 H 0.11 -1.11 7.96 -2.39 -0.02 -1.13 16 27 H -0.29 -0.70 7.05 99.48 0.70 0.01 16 28 H -0.28 0.09 7.11 99.48 0.71 0.79 16 29 H 0.17 -0.76 8.06 -2.91 -0.02 -0.78 16 30 H 0.16 0.50 7.64 -2.91 -0.02 0.48 16 31 H 0.42 0.37 8.03 -92.71 -0.74 -0.38 16 32 H 0.13 -1.54 8.10 -2.39 -0.02 -1.56 16 33 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.11 -1.26 7.84 -2.38 -0.02 -1.28 16 35 H 0.12 -1.43 8.14 -2.39 -0.02 -1.44 16 36 H 0.20 -0.74 8.06 -2.91 -0.02 -0.76 16 37 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.23 -0.76 8.06 -2.92 -0.02 -0.78 16 39 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.11 -0.69 7.90 -2.39 -0.02 -0.71 16 41 H 0.16 0.45 4.88 -2.91 -0.01 0.43 16 Total: 0.00 -27.66 351.98 -0.32 -27.98 By element: Atomic # 1 Polarization: -13.46 SS G_CDS: -0.29 Total: -13.75 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.68 Total: 14.18 kcal Atomic # 7 Polarization: -11.10 SS G_CDS: -7.80 Total: -18.89 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -1.97 Total: -7.29 kcal Atomic # 14 Polarization: -4.28 SS G_CDS: 2.05 Total: -2.23 kcal Total: -27.66 -0.32 -27.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.282 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds