Wall clock time and date at job start Sun Mar 7 2021 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34665 * 124.85033 * 2 1 4 4 C 1.36770 * 108.39285 * 180.14453 * 3 2 1 5 5 C 1.47264 * 126.93590 * 179.83246 * 4 3 2 6 6 O 1.21633 * 119.99665 * 179.68871 * 5 4 3 7 7 N 1.34777 * 120.00360 * 359.69309 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27622 * 7 5 4 9 9 H 1.09002 * 112.85022 * 335.91707 * 8 7 5 10 10 C 1.53782 * 113.61718 * 107.22525 * 8 7 5 11 11 C 1.53774 * 87.08161 * 89.11276 * 10 8 7 12 12 H 1.09004 * 113.61904 * 270.88211 * 11 10 8 13 13 C 1.53006 * 113.69346 * 139.99149 * 11 10 8 14 14 N 1.46499 * 109.46946 * 87.46501 * 13 11 10 15 15 C 1.36880 * 126.39805 * 90.00161 * 14 13 11 16 16 C 1.34674 * 106.81857 * 180.02562 * 15 14 13 17 17 N 1.34131 * 108.02014 * 0.02562 * 16 15 14 18 18 C 1.30506 * 109.25409 * 359.72010 * 17 16 15 19 19 C 1.53781 * 113.61158 * 204.72374 * 8 7 5 20 20 C 1.46686 * 106.11692 * 359.57831 * 4 3 2 21 21 C 1.34489 * 106.33069 * 0.25697 * 20 4 3 22 22 C 1.50702 * 125.56620 * 179.97438 * 21 20 4 23 23 O 1.42902 * 109.46909 * 150.02666 * 22 21 20 24 24 Si 1.86298 * 109.47256 * 30.02433 * 22 21 20 25 25 H 1.08998 * 109.47327 * 270.34197 * 1 2 3 26 26 H 1.09004 * 109.46952 * 30.33870 * 1 2 3 27 27 H 1.08996 * 109.47403 * 150.33557 * 1 2 3 28 28 H 1.08001 * 125.79977 * 0.02562 * 3 2 1 29 29 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 30 30 H 1.08999 * 113.61704 * 203.66488 * 10 8 7 31 31 H 1.09006 * 113.61098 * 334.56706 * 10 8 7 32 32 H 1.08993 * 109.47269 * 207.46631 * 13 11 10 33 33 H 1.09003 * 109.46505 * 327.46812 * 13 11 10 34 34 H 1.07991 * 126.59217 * 0.04137 * 15 14 13 35 35 H 1.07995 * 125.99159 * 180.02562 * 16 15 14 36 36 H 1.08001 * 125.64526 * 180.28719 * 18 17 16 37 37 H 1.08995 * 113.61890 * 25.43111 * 19 8 7 38 38 H 1.09004 * 113.61421 * 156.25407 * 19 8 7 39 39 H 1.07998 * 126.83203 * 180.29763 * 20 4 3 40 40 H 1.08999 * 109.46890 * 270.02002 * 22 21 20 41 41 H 0.96702 * 113.99850 * 299.99395 * 23 22 21 42 42 H 1.48497 * 109.99998 * 58.68167 * 24 22 21 43 43 H 1.48509 * 109.99641 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0033 5 6 4.7283 1.5958 -0.0079 6 8 5.8447 1.1128 -0.0048 7 7 4.5734 2.9346 -0.0155 8 6 5.7494 3.8081 -0.0262 9 1 6.6379 3.3268 0.3827 10 6 5.9892 4.5020 -1.3775 11 6 5.0853 5.6362 -0.8663 12 1 4.0286 5.4861 -1.0881 13 6 5.5791 7.0340 -1.2450 14 7 5.0518 7.3978 -2.5625 15 6 3.8712 8.0427 -2.8151 16 6 3.7782 8.1758 -4.1521 17 7 4.8719 7.6264 -4.7008 18 6 5.6420 7.1634 -3.7544 19 6 5.4834 5.2065 0.5556 20 6 3.5375 -0.7492 0.0050 21 6 2.2447 -1.1197 0.0067 22 6 1.7397 -2.5396 0.0140 23 8 0.4804 -2.5938 0.6871 24 14 2.9643 -3.6296 0.8988 25 1 -0.3634 0.0061 1.0276 26 1 -0.3633 0.8870 -0.5191 27 1 -0.3634 -0.8929 -0.5086 28 1 1.8767 2.1241 0.0004 29 1 3.6831 3.3197 -0.0183 30 1 7.0241 4.8057 -1.5349 31 1 5.5721 3.9603 -2.2265 32 1 5.2336 7.7545 -0.5038 33 1 6.6686 7.0383 -1.2758 34 1 3.1526 8.3803 -2.0831 35 1 2.9654 8.6428 -4.6883 36 1 6.5926 6.6720 -3.9004 37 1 4.6582 5.2337 1.2671 38 1 6.3799 5.7022 0.9280 39 1 4.3981 -1.4017 0.0096 40 1 1.6186 -2.8873 -1.0119 41 1 0.5131 -2.2979 1.6072 42 1 3.1623 -3.1468 2.2890 43 1 2.4776 -5.0326 0.9133 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:16 Heat of formation + Delta-G solvation = 80.821486 kcal Electronic energy + Delta-G solvation = -25816.218811 eV Core-core repulsion = 22059.263430 eV Total energy + Delta-G solvation = -3756.955381 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.92149 -42.48320 -41.00269 -39.20394 -37.89281 -35.31656 -34.03323 -33.55803 -31.38777 -30.35470 -28.87349 -27.52599 -26.67913 -26.30779 -24.50318 -23.42920 -22.22171 -21.78104 -21.08509 -20.71308 -20.17955 -19.12263 -18.31784 -17.47489 -17.22696 -16.81855 -16.75163 -16.42706 -15.84656 -15.65536 -15.50436 -15.42659 -15.26474 -14.86496 -14.84126 -14.60969 -14.44503 -14.19364 -14.10164 -13.61295 -13.44766 -13.38067 -13.21670 -13.13447 -12.73625 -12.44872 -12.28705 -12.02201 -11.67903 -11.31111 -11.04463 -10.96531 -10.87705 -10.44710 -10.08650 -9.59177 -9.41487 -9.23299 -4.90672 0.70770 1.01810 1.18805 1.43384 1.61515 1.78775 1.95907 2.03380 2.24452 2.25933 2.52682 3.19225 3.43109 3.52476 3.54909 3.74898 3.83138 3.85948 3.91479 3.93285 4.12227 4.15656 4.26162 4.29718 4.38239 4.43746 4.51221 4.56246 4.63641 4.71669 4.76642 4.79740 4.81791 4.84495 4.93862 4.97662 5.03740 5.05439 5.22323 5.39149 5.59804 5.67542 5.86458 5.94234 6.19871 6.33664 6.34493 6.61335 7.19602 7.32706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.427 5.427 3 C 0.070 3.930 4 C -0.262 4.262 5 C 0.590 3.410 6 O -0.591 6.591 7 N -0.701 5.701 8 C 0.110 3.890 9 H 0.083 0.917 10 C -0.148 4.148 11 C -0.113 4.113 12 H 0.093 0.907 13 C 0.110 3.890 14 N -0.451 5.451 15 C -0.046 4.046 16 C -0.068 4.068 17 N -0.547 5.547 18 C 0.174 3.826 19 C -0.117 4.117 20 C -0.156 4.156 21 C -0.023 4.023 22 C -0.044 4.044 23 O -0.540 6.540 24 Si 0.772 3.228 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.205 0.795 29 H 0.411 0.589 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.202 0.798 35 H 0.171 0.829 36 H 0.220 0.780 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.386 0.614 42 H -0.294 1.294 43 H -0.289 1.289 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 3.320 5.034 7.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.101 5.101 3 C -0.067 4.067 4 C -0.272 4.272 5 C 0.380 3.620 6 O -0.472 6.472 7 N -0.352 5.352 8 C 0.005 3.995 9 H 0.102 0.898 10 C -0.187 4.187 11 C -0.132 4.132 12 H 0.112 0.888 13 C -0.011 4.011 14 N -0.133 5.133 15 C -0.180 4.180 16 C -0.215 4.215 17 N -0.266 5.266 18 C -0.109 4.109 19 C -0.156 4.156 20 C -0.180 4.180 21 C -0.132 4.132 22 C -0.154 4.154 23 O -0.348 6.348 24 Si 0.677 3.323 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.222 0.778 29 H 0.247 0.753 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.219 0.781 35 H 0.189 0.811 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.235 0.765 42 H -0.220 1.220 43 H -0.216 1.216 Dipole moment (debyes) X Y Z Total from point charges -3.720 2.116 4.442 6.168 hybrid contribution -1.300 0.511 1.199 1.841 sum -5.020 2.627 5.640 7.995 Atomic orbital electron populations 1.22447 0.74556 1.05893 1.04906 1.43725 1.08056 1.04666 1.53670 1.22367 0.89100 0.93111 1.02154 1.20339 0.92192 0.94021 1.20619 1.17672 0.87788 0.82177 0.74363 1.90753 1.27649 1.76109 1.52726 1.45358 1.09906 1.04690 1.75211 1.21859 0.89183 0.90804 0.97704 0.89830 1.23552 1.01177 0.96972 0.96953 1.22898 1.00211 0.92858 0.97268 0.88830 1.22236 1.01125 0.96877 0.80862 1.45756 1.16586 1.42414 1.08518 1.23150 0.91909 1.04412 0.98538 1.22638 0.99082 1.06940 0.92828 1.70246 1.05931 1.16568 1.33896 1.25365 1.01424 1.04170 0.79953 1.23274 1.04121 0.92807 0.95364 1.21823 0.95602 0.93556 1.06988 1.20863 0.90466 0.89780 1.12078 1.24729 0.92622 0.94001 1.04042 1.86562 1.29372 1.88825 1.30037 0.93339 0.84550 0.74630 0.79831 0.89365 0.87919 0.88833 0.77799 0.75263 0.87832 0.93004 0.86729 0.87011 0.78086 0.81138 0.76374 0.89214 0.86528 0.82776 0.85049 0.76465 1.22038 1.21568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.53 9.81 127.77 1.25 0.73 16 2 N -0.43 1.22 3.09 -533.23 -1.65 -0.43 16 3 C 0.07 -0.23 10.83 83.91 0.91 0.68 16 4 C -0.26 -0.99 6.29 -19.04 -0.12 -1.11 16 5 C 0.59 4.06 7.81 86.62 0.68 4.73 16 6 O -0.59 -9.53 16.57 -4.14 -0.07 -9.60 16 7 N -0.70 1.09 5.25 -443.44 -2.33 -1.24 16 8 C 0.11 -0.31 4.32 45.52 0.20 -0.12 16 9 H 0.08 0.20 7.47 -2.39 -0.02 0.19 16 10 C -0.15 0.67 7.43 31.12 0.23 0.91 16 11 C -0.11 1.07 3.84 -10.27 -0.04 1.03 16 12 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 13 C 0.11 -1.10 5.99 86.38 0.52 -0.58 16 14 N -0.45 1.11 2.75 -529.06 -1.46 -0.34 16 15 C -0.05 0.04 11.58 83.09 0.96 1.00 16 16 C -0.07 -0.38 11.87 83.52 0.99 0.61 16 17 N -0.55 -5.48 11.25 -200.30 -2.25 -7.73 16 18 C 0.17 0.50 12.56 180.26 2.26 2.76 16 19 C -0.12 1.22 7.39 31.12 0.23 1.45 16 20 C -0.16 -0.66 9.49 23.62 0.22 -0.43 16 21 C -0.02 -0.01 6.14 40.99 0.25 0.24 16 22 C -0.04 0.09 2.87 71.24 0.20 0.29 16 23 O -0.54 1.20 10.32 -148.98 -1.54 -0.33 16 24 Si 0.77 -0.64 31.12 68.60 2.13 1.50 16 25 H 0.09 -0.95 8.14 -2.39 -0.02 -0.96 16 26 H 0.10 -1.26 8.13 -2.39 -0.02 -1.28 16 27 H 0.09 -0.61 6.73 -2.39 -0.02 -0.62 16 28 H 0.21 -2.40 7.45 -2.91 -0.02 -2.42 16 29 H 0.41 -3.25 7.64 -92.71 -0.71 -3.96 16 30 H 0.10 -0.68 7.90 -2.39 -0.02 -0.69 16 31 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.11 -1.52 8.14 -2.39 -0.02 -1.54 16 33 H 0.11 -1.37 7.85 -2.39 -0.02 -1.39 16 34 H 0.20 -1.61 8.06 -2.92 -0.02 -1.63 16 35 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 36 H 0.22 -0.61 8.06 -2.91 -0.02 -0.64 16 37 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.12 -1.51 8.10 -2.39 -0.02 -1.53 16 39 H 0.15 0.54 6.89 -2.91 -0.02 0.52 16 40 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 41 H 0.39 -2.60 8.70 -74.06 -0.64 -3.25 16 42 H -0.29 -1.55 7.11 99.48 0.71 -0.84 16 43 H -0.29 -1.46 7.11 99.48 0.71 -0.75 16 Total: 0.00 -30.05 362.48 1.32 -28.73 By element: Atomic # 1 Polarization: -22.48 SS G_CDS: -0.28 Total: -22.76 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 8.75 Total: 12.20 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: -7.68 Total: -9.74 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.61 Total: -9.93 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: 2.13 Total: 1.50 kcal Total: -30.05 1.32 -28.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.547 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds