Wall clock time and date at job start Sun Mar 7 2021 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.34847 * 125.89886 * 149.69762 * 4 2 1 6 6 C 1.40944 * 107.46880 * 179.90800 * 5 4 2 7 7 C 1.34851 * 107.46592 * 0.35166 * 6 5 4 8 8 N 1.36564 * 108.19940 * 359.78532 * 7 6 5 9 9 C 1.40206 * 125.66649 * 179.97438 * 8 7 6 10 10 C 1.38833 * 120.06550 * 129.76912 * 9 8 7 11 11 C 1.38120 * 119.93181 * 179.72406 * 10 9 8 12 12 C 1.38274 * 120.06665 * 0.57286 * 11 10 9 13 13 C 1.50696 * 119.93444 * 179.70284 * 12 11 10 14 14 C 1.50696 * 109.47265 * 269.97789 * 13 12 11 15 15 O 1.21283 * 119.99937 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00318 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00222 * 179.97438 * 16 14 13 18 18 H 1.08993 * 112.84827 * 334.67453 * 17 16 14 19 19 C 1.53786 * 113.60975 * 105.86445 * 17 16 14 20 20 C 1.54056 * 86.98322 * 89.16428 * 19 17 16 21 21 H 1.09000 * 113.60866 * 270.87819 * 20 19 17 22 22 C 1.53003 * 113.69182 * 139.98762 * 20 19 17 23 23 N 1.46496 * 109.47167 * 87.46791 * 22 20 19 24 24 C 1.36884 * 126.39361 * 269.71072 * 23 22 20 25 25 C 1.34674 * 106.81570 * 179.84230 * 24 23 22 26 26 N 1.34127 * 108.02029 * 0.42109 * 25 24 23 27 27 C 1.30498 * 109.25696 * 359.73161 * 26 25 24 28 28 C 1.53775 * 113.61422 * 203.47174 * 17 16 14 29 29 C 1.38278 * 120.12952 * 359.67968 * 12 11 10 30 30 C 1.38118 * 120.06826 * 0.04583 * 29 12 11 31 31 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 32 32 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 33 33 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 34 34 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 35 35 H 1.07998 * 126.26409 * 0.02854 * 5 4 2 36 36 H 1.07997 * 126.26782 * 180.14147 * 6 5 4 37 37 H 1.07991 * 125.89850 * 179.78650 * 7 6 5 38 38 H 1.08001 * 120.03172 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.96016 * 180.25711 * 11 10 9 40 40 H 1.09005 * 109.47345 * 29.97758 * 13 12 11 41 41 H 1.09004 * 109.47353 * 149.97640 * 13 12 11 42 42 H 0.97002 * 119.99929 * 0.02562 * 16 14 13 43 43 H 1.09003 * 113.60817 * 203.66379 * 19 17 16 44 44 H 1.08993 * 113.61536 * 334.56631 * 19 17 16 45 45 H 1.09006 * 109.46639 * 207.46281 * 22 20 19 46 46 H 1.08995 * 109.47159 * 327.46080 * 22 20 19 47 47 H 1.07997 * 126.59154 * 359.97438 * 24 23 22 48 48 H 1.08001 * 125.98949 * 180.12116 * 25 24 23 49 49 H 1.08002 * 125.65305 * 180.02562 * 27 26 25 50 50 H 1.08994 * 113.61545 * 25.43410 * 28 17 16 51 51 H 1.08998 * 113.61289 * 156.25743 * 28 17 16 52 52 H 1.08006 * 119.96428 * 180.02562 * 29 12 11 53 53 H 1.07997 * 120.03098 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 3.0841 -0.4488 -1.8793 6 6 3.1681 -1.3394 -2.9685 7 6 2.0599 -2.1075 -2.9496 8 7 1.2951 -1.7267 -1.8842 9 6 0.0614 -2.2858 -1.5222 10 6 -0.1596 -2.6954 -0.2142 11 6 -1.3780 -3.2406 0.1408 12 6 -2.3731 -3.3895 -0.8078 13 6 -3.6989 -3.9908 -0.4188 14 6 -3.6467 -5.4853 -0.6050 15 8 -2.6328 -6.0104 -1.0139 16 7 -4.7267 -6.2385 -0.3172 17 6 -4.6761 -7.6913 -0.4988 18 1 -3.9428 -7.9994 -1.2439 19 6 -4.5791 -8.4741 0.8214 20 6 -6.1196 -8.4764 0.8388 21 1 -6.5518 -7.6101 1.3396 22 6 -6.7271 -9.7993 1.3097 23 7 -6.8510 -9.7877 2.7693 24 6 -5.9121 -10.2183 3.6676 25 6 -6.4307 -10.0259 4.8955 26 7 -7.6565 -9.5010 4.7507 27 6 -7.9150 -9.3555 3.4799 28 6 -6.0586 -8.3365 -0.6915 29 6 -2.1540 -2.9873 -2.1125 30 6 -0.9397 -2.4362 -2.4722 31 1 -0.3934 0.4418 0.7650 32 1 1.7923 -0.5138 0.8901 33 1 1.5616 2.4678 -1.2086 34 1 1.5878 2.4586 1.2241 35 1 3.8109 0.3041 -1.6122 36 1 3.9712 -1.3942 -3.6884 37 1 1.8189 -2.8887 -3.6552 38 1 0.6190 -2.5841 0.5259 39 1 -1.5519 -3.5555 1.1591 40 1 -3.9092 -3.7620 0.6261 41 1 -4.4856 -3.5736 -1.0474 42 1 -5.5378 -5.8185 0.0095 43 1 -4.1423 -9.4664 0.7094 44 1 -4.1327 -7.9033 1.6356 45 1 -7.7131 -9.9259 0.8623 46 1 -6.0819 -10.6238 1.0063 47 1 -4.9413 -10.6308 3.4361 48 1 -5.9465 -10.2584 5.8325 49 1 -8.8284 -8.9554 3.0650 50 1 -6.8058 -7.6549 -1.0977 51 1 -6.0257 -9.2907 -1.2174 52 1 -2.9332 -3.1044 -2.8512 53 1 -0.7691 -2.1227 -3.4915 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:24 Heat of formation + Delta-G solvation = 118.046486 kcal Electronic energy + Delta-G solvation = -35097.420617 eV Core-core repulsion = 30518.099633 eV Total energy + Delta-G solvation = -4579.320984 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.94454 -42.67648 -41.39898 -40.18685 -39.16201 -37.85397 -35.35968 -34.87612 -33.85010 -32.19873 -31.77264 -31.17946 -30.41799 -28.95431 -27.67371 -26.73569 -26.01106 -24.37840 -24.01369 -23.33369 -22.25035 -21.81794 -21.70769 -21.41101 -20.52195 -20.30386 -18.81436 -18.52067 -18.45824 -18.01696 -17.34855 -17.03355 -16.65579 -16.44224 -16.18803 -15.89199 -15.74626 -15.69510 -15.39258 -15.10785 -14.97064 -14.90592 -14.70646 -14.57772 -14.53209 -14.29066 -14.19326 -14.17111 -13.78224 -13.56118 -13.46266 -13.21792 -13.17273 -13.03821 -12.82475 -12.70879 -12.64201 -12.31859 -12.14031 -12.08289 -11.71749 -11.34770 -11.07390 -10.91529 -10.78309 -10.47404 -10.32384 -10.09439 -10.00641 -9.44523 -9.16950 -9.01722 -4.91555 -0.01174 0.32243 1.02591 1.16312 1.42385 1.56807 1.60027 1.88873 1.93240 1.97521 2.08389 2.11187 2.23494 2.70529 3.19579 3.38029 3.48752 3.57779 3.68901 3.71184 3.72095 3.79211 3.85487 3.89718 3.96076 4.04386 4.14941 4.17295 4.19466 4.26728 4.28790 4.37085 4.48822 4.50078 4.51944 4.59081 4.60901 4.62912 4.69427 4.74441 4.79305 4.80341 4.85912 4.92917 4.97819 5.00736 5.15958 5.16852 5.18407 5.27484 5.35232 5.36018 5.46077 5.57906 5.77043 5.82549 5.95962 6.20757 6.33356 6.46916 6.49597 6.53106 7.16809 7.21903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.061 4.061 3 Si 0.795 3.205 4 C 0.011 3.989 5 C -0.198 4.198 6 C -0.195 4.195 7 C -0.031 4.031 8 N -0.400 5.400 9 C 0.123 3.877 10 C -0.099 4.099 11 C -0.097 4.097 12 C -0.071 4.071 13 C -0.097 4.097 14 C 0.516 3.484 15 O -0.578 6.578 16 N -0.703 5.703 17 C 0.110 3.890 18 H 0.080 0.920 19 C -0.147 4.147 20 C -0.114 4.114 21 H 0.096 0.904 22 C 0.109 3.891 23 N -0.451 5.451 24 C -0.047 4.047 25 C -0.066 4.066 26 N -0.546 5.546 27 C 0.175 3.825 28 C -0.118 4.118 29 C -0.097 4.097 30 C -0.134 4.134 31 H 0.393 0.607 32 H 0.093 0.907 33 H -0.311 1.311 34 H -0.276 1.276 35 H 0.174 0.826 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.416 0.584 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.192 0.808 48 H 0.169 0.831 49 H 0.230 0.770 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.143 0.857 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -0.190 -1.342 3.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.169 4.169 3 Si 0.699 3.301 4 C -0.099 4.099 5 C -0.222 4.222 6 C -0.219 4.219 7 C -0.158 4.158 8 N -0.073 5.073 9 C 0.033 3.967 10 C -0.119 4.119 11 C -0.115 4.115 12 C -0.071 4.071 13 C -0.136 4.136 14 C 0.303 3.697 15 O -0.457 6.457 16 N -0.355 5.355 17 C 0.004 3.996 18 H 0.098 0.902 19 C -0.185 4.185 20 C -0.133 4.133 21 H 0.115 0.885 22 C -0.012 4.012 23 N -0.133 5.133 24 C -0.181 4.181 25 C -0.213 4.213 26 N -0.265 5.265 27 C -0.108 4.108 28 C -0.156 4.156 29 C -0.116 4.116 30 C -0.153 4.153 31 H 0.244 0.756 32 H 0.111 0.889 33 H -0.239 1.239 34 H -0.203 1.203 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.254 0.746 43 H 0.115 0.885 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.124 0.876 47 H 0.209 0.791 48 H 0.187 0.813 49 H 0.246 0.754 50 H 0.111 0.889 51 H 0.131 0.869 52 H 0.161 0.839 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.210 0.010 -1.605 3.589 hybrid contribution -0.586 -0.280 -0.020 0.650 sum -3.796 -0.270 -1.625 4.138 Atomic orbital electron populations 1.86632 1.17931 1.80454 1.50932 1.24721 0.84387 1.11716 0.96039 0.93597 0.90128 0.70253 0.76137 1.20402 0.95937 0.94619 0.98913 1.21023 0.98331 1.04764 0.98092 1.21228 0.99606 0.99362 1.01747 1.22323 0.94251 1.04981 0.94236 1.41610 1.15130 1.27403 1.23173 1.17817 0.84848 0.99170 0.94901 1.20879 0.98309 0.98277 0.94387 1.21037 0.92030 0.98155 1.00300 1.19536 0.95879 0.98276 0.93436 1.20738 0.96214 0.89866 1.06759 1.20979 0.82679 0.90011 0.76002 1.90751 1.32826 1.75292 1.46826 1.45602 1.15953 1.06693 1.67292 1.21831 0.99710 0.80068 0.97952 0.90199 1.23557 0.96282 1.01239 0.97458 1.22964 0.95441 0.97656 0.97222 0.88549 1.22228 1.05110 0.98951 0.74874 1.45739 1.13480 1.45728 1.08369 1.23040 0.97824 1.07776 0.89500 1.22590 0.93339 1.06778 0.98623 1.70243 1.17213 1.20258 1.18757 1.25530 0.95043 1.03393 0.86792 1.23258 0.95207 1.02666 0.94514 1.21044 0.96612 0.97582 0.96330 1.21098 0.93117 1.01798 0.99326 0.75646 0.88940 1.23916 1.20253 0.80855 0.82248 0.81150 0.85958 0.84097 0.85203 0.84939 0.74641 0.88482 0.92825 0.86337 0.87605 0.79060 0.81348 0.75417 0.88926 0.86862 0.83930 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.82 9.84 -148.98 -1.47 -3.29 16 2 C -0.06 -0.11 2.28 71.24 0.16 0.05 16 3 Si 0.80 -0.35 31.13 68.60 2.14 1.78 16 4 C 0.01 0.08 6.06 41.04 0.25 0.32 16 5 C -0.20 -0.96 9.42 22.15 0.21 -0.76 16 6 C -0.20 -1.14 10.86 22.15 0.24 -0.90 16 7 C -0.03 -0.24 11.12 83.18 0.93 0.68 16 8 N -0.40 -3.81 2.87 -333.42 -0.96 -4.77 16 9 C 0.12 1.10 4.89 38.08 0.19 1.29 16 10 C -0.10 -0.65 7.66 22.38 0.17 -0.47 16 11 C -0.10 -0.32 9.69 22.25 0.22 -0.11 16 12 C -0.07 -0.14 4.37 -19.85 -0.09 -0.23 16 13 C -0.10 0.50 5.83 29.10 0.17 0.67 16 14 C 0.52 0.14 7.82 87.66 0.69 0.82 16 15 O -0.58 -6.31 15.65 -3.04 -0.05 -6.35 16 16 N -0.70 4.11 5.26 -440.04 -2.32 1.79 16 17 C 0.11 -0.57 4.30 45.52 0.20 -0.37 16 18 H 0.08 0.04 7.50 -2.39 -0.02 0.02 16 19 C -0.15 0.87 7.45 31.22 0.23 1.11 16 20 C -0.11 1.20 3.85 -10.17 -0.04 1.16 16 21 H 0.10 -0.93 8.14 -2.39 -0.02 -0.94 16 22 C 0.11 -1.15 5.99 86.38 0.52 -0.63 16 23 N -0.45 1.36 2.75 -529.06 -1.46 -0.09 16 24 C -0.05 -0.01 11.58 83.09 0.96 0.96 16 25 C -0.07 -0.39 11.87 83.52 0.99 0.60 16 26 N -0.55 -4.83 11.25 -200.31 -2.25 -7.09 16 27 C 0.18 0.15 12.56 180.26 2.26 2.42 16 28 C -0.12 1.39 7.38 31.12 0.23 1.62 16 29 C -0.10 -0.38 9.69 22.25 0.22 -0.16 16 30 C -0.13 -1.00 9.66 22.38 0.22 -0.78 16 31 H 0.39 -1.90 8.74 -74.06 -0.65 -2.55 16 32 H 0.09 -0.19 7.96 -2.38 -0.02 -0.21 16 33 H -0.31 -2.85 7.11 99.48 0.71 -2.14 16 34 H -0.28 -0.54 7.11 99.48 0.71 0.16 16 35 H 0.17 -0.30 6.88 -2.91 -0.02 -0.32 16 36 H 0.16 0.22 8.06 -2.91 -0.02 0.19 16 37 H 0.17 0.79 8.06 -2.92 -0.02 0.76 16 38 H 0.12 0.67 7.67 -2.91 -0.02 0.65 16 39 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 40 H 0.13 -1.30 8.08 -2.38 -0.02 -1.32 16 41 H 0.13 -1.38 8.08 -2.39 -0.02 -1.40 16 42 H 0.42 -4.97 8.70 -92.71 -0.81 -5.78 16 43 H 0.10 -0.66 7.91 -2.39 -0.02 -0.68 16 44 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.12 -1.68 8.14 -2.38 -0.02 -1.70 16 46 H 0.11 -1.28 7.85 -2.39 -0.02 -1.29 16 47 H 0.19 -0.98 8.06 -2.91 -0.02 -1.00 16 48 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 49 H 0.23 -1.49 8.06 -2.91 -0.02 -1.52 16 50 H 0.09 -1.24 8.14 -2.39 -0.02 -1.26 16 51 H 0.11 -1.54 8.10 -2.39 -0.02 -1.56 16 52 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 53 H 0.12 0.80 8.06 -2.91 -0.02 0.77 16 Total: 0.00 -33.68 441.84 2.07 -31.61 By element: Atomic # 1 Polarization: -20.40 SS G_CDS: -0.48 Total: -20.88 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 8.91 Total: 7.29 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -6.98 Total: -10.16 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -1.51 Total: -9.64 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: 2.14 Total: 1.78 kcal Total: -33.68 2.07 -31.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.654 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds