Wall clock time and date at job start Sun Mar 7 2021 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38354 * 120.35230 * 65.00111 * 4 2 1 6 6 C 1.40019 * 118.29189 * 179.97438 * 5 4 2 7 7 C 1.47846 * 120.55893 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00183 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99989 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00013 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85181 * 23.79810 * 10 9 7 12 12 C 1.53779 * 113.61567 * 155.00102 * 10 9 7 13 13 C 1.53781 * 87.08495 * 89.11356 * 12 10 9 14 14 H 1.08998 * 113.61220 * 270.80171 * 13 12 10 15 15 C 1.52998 * 113.61445 * 139.98022 * 13 12 10 16 16 N 1.46505 * 109.46963 * 175.00179 * 15 13 12 17 17 C 1.36875 * 126.39597 * 90.00058 * 16 15 13 18 18 C 1.34679 * 106.81660 * 180.02562 * 17 16 15 19 19 N 1.34131 * 108.01826 * 359.97438 * 18 17 16 20 20 C 1.30504 * 109.25393 * 359.72854 * 19 18 17 21 21 C 1.53784 * 113.61373 * 252.49588 * 10 9 7 22 22 C 1.39524 * 118.88197 * 0.02562 * 6 5 4 23 23 N 1.31685 * 120.56574 * 359.97438 * 22 6 5 24 24 C 1.31927 * 121.88251 * 359.70521 * 23 22 6 25 25 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 26 26 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 27 27 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 28 28 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 29 29 H 1.08002 * 120.85163 * 359.97438 * 5 4 2 30 30 H 0.97003 * 119.99718 * 359.97438 * 9 7 6 31 31 H 1.08999 * 113.61664 * 203.66481 * 12 10 9 32 32 H 1.09006 * 113.61163 * 334.47868 * 12 10 9 33 33 H 1.08993 * 109.47088 * 295.00176 * 15 13 12 34 34 H 1.09001 * 109.47141 * 55.00251 * 15 13 12 35 35 H 1.07994 * 126.59554 * 0.03740 * 17 16 15 36 36 H 1.07998 * 125.98798 * 180.02562 * 18 17 16 37 37 H 1.08005 * 125.64640 * 180.29310 * 20 19 18 38 38 H 1.08999 * 113.61212 * 25.42811 * 21 10 9 39 39 H 1.08997 * 113.61534 * 156.33336 * 21 10 9 40 40 H 1.08004 * 119.71365 * 180.02562 * 22 6 5 41 41 H 1.08002 * 119.46671 * 180.31311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.6885 -2.0610 1.4061 6 6 2.1754 -2.6776 2.5652 7 6 1.9453 -4.1185 2.8033 8 8 1.3294 -4.7784 1.9893 9 7 2.4185 -4.7004 3.9232 10 6 2.1911 -6.1283 4.1589 11 1 2.0168 -6.6867 3.2392 12 6 3.2366 -6.7743 5.0831 13 6 2.3261 -6.3807 6.2582 14 1 2.5333 -5.3879 6.6576 15 6 2.2331 -7.4517 7.3469 16 7 1.4450 -6.9388 8.4704 17 6 0.0897 -7.0474 8.6282 18 6 -0.2168 -6.4417 9.7915 19 7 0.9204 -5.9766 10.3293 20 6 1.9207 -6.2760 9.5465 21 6 1.1564 -6.4136 5.2603 22 6 2.8813 -1.9093 3.4915 23 7 3.0867 -0.6260 3.2793 24 6 2.6453 -0.0199 2.1938 25 1 -0.3934 0.4417 0.7649 26 1 1.7924 -0.5139 -0.8899 27 1 3.5346 1.7703 0.0322 28 1 1.5616 2.4678 -1.2086 29 1 1.1377 -2.6253 0.6681 30 1 2.9104 -4.1739 4.5726 31 1 3.3333 -7.8515 4.9474 32 1 4.1976 -6.2597 5.0822 33 1 1.7514 -8.3413 6.9413 34 1 3.2350 -7.7065 7.6924 35 1 -0.6011 -7.5268 7.9505 36 1 -1.2050 -6.3479 10.2169 37 1 2.9570 -6.0316 9.7278 38 1 0.4376 -5.6069 5.4036 39 1 0.6843 -7.3921 5.1730 40 1 3.2632 -2.3713 4.3900 41 1 2.8404 1.0335 2.0570 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:29 Heat of formation + Delta-G solvation = 69.554486 kcal Electronic energy + Delta-G solvation = -25095.292363 eV Core-core repulsion = 21365.159887 eV Total energy + Delta-G solvation = -3730.132476 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92710 -42.03139 -40.94011 -39.42295 -37.95650 -35.49277 -34.22247 -33.81321 -32.76528 -30.39718 -28.84653 -27.31788 -26.74238 -26.05673 -24.07030 -23.84168 -22.23702 -21.93249 -21.77204 -20.40428 -19.34418 -18.36372 -18.15183 -17.85635 -17.71702 -16.92059 -16.55443 -16.49113 -16.05856 -15.99743 -15.70816 -15.16011 -14.98963 -14.87632 -14.68492 -14.55535 -14.39629 -14.25918 -14.17134 -13.75359 -13.53954 -13.45014 -12.77066 -12.74981 -12.35659 -12.20483 -11.73291 -11.51632 -11.35660 -11.13095 -10.89043 -10.64189 -10.61161 -10.47346 -10.38175 -10.14870 -9.42284 -5.04028 -0.62756 -0.07978 1.18513 1.20561 1.57536 1.60889 1.84887 1.95327 1.96378 2.25742 2.57704 3.05715 3.33932 3.38129 3.41980 3.47577 3.61003 3.65815 3.69149 3.74270 3.78182 3.92067 4.05763 4.06014 4.19292 4.21464 4.28005 4.43319 4.52463 4.61052 4.66714 4.75241 4.77277 4.80304 4.81621 4.89920 4.97644 5.00096 5.11767 5.27457 5.37517 5.49995 5.84764 6.28166 6.35709 6.59730 6.67987 6.96718 7.19139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.074 4.074 3 Si 0.783 3.217 4 C -0.176 4.176 5 C -0.003 4.003 6 C -0.198 4.198 7 C 0.567 3.433 8 O -0.573 6.573 9 N -0.692 5.692 10 C 0.108 3.892 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.116 4.116 14 H 0.096 0.904 15 C 0.110 3.890 16 N -0.452 5.452 17 C -0.047 4.047 18 C -0.067 4.067 19 N -0.546 5.546 20 C 0.175 3.825 21 C -0.146 4.146 22 C 0.147 3.853 23 N -0.493 5.493 24 C 0.132 3.868 25 H 0.397 0.603 26 H 0.111 0.889 27 H -0.276 1.276 28 H -0.295 1.295 29 H 0.136 0.864 30 H 0.414 0.586 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.193 0.807 36 H 0.169 0.831 37 H 0.230 0.770 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.190 0.810 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -0.309 1.009 4.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.184 4.184 3 Si 0.687 3.313 4 C -0.178 4.178 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.354 3.646 8 O -0.453 6.453 9 N -0.344 5.344 10 C 0.002 3.998 11 H 0.106 0.894 12 C -0.156 4.156 13 C -0.135 4.135 14 H 0.115 0.885 15 C -0.011 4.011 16 N -0.133 5.133 17 C -0.181 4.181 18 C -0.214 4.214 19 N -0.265 5.265 20 C -0.108 4.108 21 C -0.184 4.184 22 C -0.011 4.011 23 N -0.200 5.200 24 C -0.024 4.024 25 H 0.247 0.753 26 H 0.129 0.871 27 H -0.203 1.203 28 H -0.222 1.222 29 H 0.154 0.846 30 H 0.253 0.747 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.246 0.754 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.207 0.793 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.785 0.325 0.737 4.852 hybrid contribution -0.674 -1.309 -1.432 2.054 sum 4.111 -0.984 -0.695 4.284 Atomic orbital electron populations 1.86513 1.16987 1.82184 1.50536 1.25251 0.85500 1.11527 0.96077 0.93763 0.78060 0.73885 0.85564 1.21459 1.01921 0.94827 0.99631 1.21655 0.92183 0.94028 0.95066 1.20993 1.05835 0.94610 0.98878 1.18200 0.78206 0.86680 0.81502 1.90800 1.42360 1.65401 1.46750 1.45457 1.56591 1.10573 1.21771 1.21957 0.98331 0.80755 0.98725 0.89394 1.23291 0.97379 1.03146 0.91755 1.22947 0.97230 0.99685 0.93679 0.88532 1.22228 0.97555 0.97067 0.84264 1.45741 1.07083 1.42076 1.18449 1.23042 0.85383 1.08081 1.01562 1.22592 0.98013 1.04603 0.96211 1.70245 0.99887 1.24667 1.31705 1.25532 1.00940 0.98926 0.85364 1.23532 0.96681 1.02944 0.95278 1.23415 0.91011 0.89128 0.97563 1.67799 1.20095 1.10918 1.21228 1.23242 0.90529 1.00860 0.87769 0.75296 0.87133 1.20265 1.22245 0.84641 0.74725 0.86386 0.88874 0.87429 0.86289 0.78973 0.81405 0.75420 0.92727 0.87891 0.79321 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.32 12.84 -148.98 -1.91 -1.60 16 2 C -0.07 0.15 2.82 71.24 0.20 0.35 16 3 Si 0.78 -3.86 29.83 68.60 2.05 -1.82 16 4 C -0.18 0.18 5.35 -19.81 -0.11 0.07 16 5 C 0.00 -0.01 9.38 22.73 0.21 0.21 16 6 C -0.20 -0.21 5.89 -19.99 -0.12 -0.32 16 7 C 0.57 1.86 7.78 86.79 0.68 2.53 16 8 O -0.57 -6.96 16.02 -3.88 -0.06 -7.03 16 9 N -0.69 3.01 5.22 -442.91 -2.31 0.70 16 10 C 0.11 -0.57 4.32 45.52 0.20 -0.38 16 11 H 0.09 -0.04 7.46 -2.39 -0.02 -0.06 16 12 C -0.12 1.44 7.39 31.12 0.23 1.67 16 13 C -0.12 1.28 3.84 -10.27 -0.04 1.24 16 14 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 15 C 0.11 -1.22 5.99 86.38 0.52 -0.70 16 16 N -0.45 1.49 2.75 -529.06 -1.46 0.04 16 17 C -0.05 0.01 11.58 83.09 0.96 0.97 16 18 C -0.07 -0.39 11.87 83.53 0.99 0.60 16 19 N -0.55 -4.83 11.25 -200.30 -2.25 -7.09 16 20 C 0.17 0.13 12.56 180.26 2.26 2.40 16 21 C -0.15 0.96 7.43 31.12 0.23 1.19 16 22 C 0.15 -0.41 10.71 85.03 0.91 0.50 16 23 N -0.49 0.20 10.35 -194.75 -2.01 -1.81 16 24 C 0.13 -0.33 9.84 84.71 0.83 0.50 16 25 H 0.40 -3.55 8.70 -74.06 -0.64 -4.19 16 26 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 27 H -0.28 0.25 7.11 99.48 0.71 0.96 16 28 H -0.29 -0.87 7.11 99.48 0.71 -0.17 16 29 H 0.14 0.76 7.74 -2.91 -0.02 0.74 16 30 H 0.41 -4.27 6.77 -92.71 -0.63 -4.90 16 31 H 0.12 -1.73 8.10 -2.39 -0.02 -1.74 16 32 H 0.09 -1.28 8.14 -2.38 -0.02 -1.30 16 33 H 0.11 -1.39 7.84 -2.39 -0.02 -1.40 16 34 H 0.12 -1.75 8.14 -2.39 -0.02 -1.77 16 35 H 0.19 -1.06 8.06 -2.91 -0.02 -1.09 16 36 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.23 -1.51 8.06 -2.91 -0.02 -1.54 16 38 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.10 -0.83 7.90 -2.39 -0.02 -0.85 16 40 H 0.19 -1.92 6.42 -2.91 -0.02 -1.94 16 41 H 0.19 -1.47 4.91 -2.91 -0.01 -1.49 16 Total: 0.00 -28.99 349.76 -0.15 -29.15 By element: Atomic # 1 Polarization: -21.23 SS G_CDS: -0.15 Total: -21.38 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.96 Total: 10.83 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -8.03 Total: -8.16 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -1.98 Total: -8.62 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.05 Total: -1.82 kcal Total: -28.99 -0.15 -29.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.704 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds