Wall clock time and date at job start Sun Mar 7 2021 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36417 * 125.80174 * 2 1 4 4 C 1.47381 * 127.19390 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99816 * 359.70203 * 4 3 2 6 6 N 1.34777 * 120.00222 * 179.70704 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27565 * 6 4 3 8 8 H 1.09002 * 112.85022 * 335.91707 * 7 6 4 9 9 C 1.53782 * 113.61718 * 107.22525 * 7 6 4 10 10 C 1.53774 * 87.08161 * 89.11276 * 9 7 6 11 11 H 1.09004 * 113.61904 * 270.88211 * 10 9 7 12 12 C 1.53006 * 113.69346 * 139.99149 * 10 9 7 13 13 N 1.46499 * 109.46946 * 87.46501 * 12 10 9 14 14 C 1.36880 * 126.39805 * 90.00161 * 13 12 10 15 15 C 1.34674 * 106.81857 * 180.02562 * 14 13 12 16 16 N 1.34131 * 108.02014 * 0.02562 * 15 14 13 17 17 C 1.30506 * 109.25409 * 359.72010 * 16 15 14 18 18 C 1.53781 * 113.61158 * 204.72374 * 7 6 4 19 19 C 1.47023 * 105.61634 * 179.75564 * 3 2 1 20 20 C 1.34177 * 105.95272 * 0.22857 * 19 3 2 21 21 C 1.50696 * 125.43725 * 179.97438 * 20 19 3 22 22 O 1.42900 * 109.47300 * 299.99967 * 21 20 19 23 23 Si 1.86303 * 109.47402 * 180.02562 * 21 20 19 24 24 O 1.33655 * 125.80292 * 180.14933 * 2 1 3 25 25 H 1.08993 * 109.47345 * 89.99365 * 1 2 3 26 26 H 1.09000 * 109.46820 * 209.99618 * 1 2 3 27 27 H 1.09008 * 109.46918 * 329.99304 * 1 2 3 28 28 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 29 29 H 1.08999 * 113.61704 * 203.66488 * 9 7 6 30 30 H 1.09006 * 113.61098 * 334.56706 * 9 7 6 31 31 H 1.08993 * 109.47269 * 207.46631 * 12 10 9 32 32 H 1.09003 * 109.46505 * 327.46812 * 12 10 9 33 33 H 1.07998 * 126.59007 * 359.96858 * 14 13 12 34 34 H 1.07995 * 125.99159 * 180.02562 * 15 14 13 35 35 H 1.08001 * 125.64526 * 180.28719 * 17 16 15 36 36 H 1.08995 * 113.61890 * 25.43111 * 18 7 6 37 37 H 1.08997 * 113.61580 * 156.33630 * 18 7 6 38 38 H 1.08004 * 127.02181 * 180.24688 * 19 3 2 39 39 H 1.09000 * 109.47334 * 59.99982 * 21 20 19 40 40 H 0.96703 * 114.00267 * 300.00066 * 22 21 20 41 41 H 1.48496 * 110.00323 * 180.02562 * 23 21 20 42 42 H 1.48500 * 109.99545 * 301.31857 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5158 0.0005 5 8 0.6890 2.7892 -0.0045 6 7 2.7931 3.5016 0.0064 7 6 2.3645 4.9025 0.0130 8 1 1.3642 5.0410 -0.3972 9 6 2.5820 5.6069 1.3626 10 6 3.9829 5.9823 0.8518 11 1 4.7443 5.2352 1.0762 12 6 4.4144 7.4014 1.2271 13 7 5.0534 7.3850 2.5453 14 6 6.3862 7.2044 2.7996 15 6 6.5388 7.2598 4.1366 16 7 5.3319 7.4679 4.6837 17 6 4.4382 7.5495 3.7362 18 6 3.4089 5.8688 -0.5704 19 6 3.6849 0.5991 0.0060 20 6 3.5859 -0.7390 0.0039 21 6 4.7459 -1.7010 0.0077 22 8 5.5477 -1.4851 -1.1552 23 14 4.1027 -3.4495 0.0019 24 8 2.2889 -1.0840 -0.0028 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 3.7382 3.2834 0.0107 29 1 1.9289 6.4657 1.5172 30 1 2.5955 4.9256 2.2135 31 1 5.1207 7.7746 0.4856 32 1 3.5398 8.0515 1.2554 33 1 7.1655 7.0468 2.0687 34 1 7.4696 7.1550 4.6740 35 1 3.3813 7.7183 3.8807 36 1 4.0900 5.3992 -1.2800 37 1 2.9819 6.7993 -0.9443 38 1 4.5928 1.1841 0.0114 39 1 5.3497 -1.5386 0.9006 40 1 5.0742 -1.6125 -1.9887 41 1 5.2370 -4.4079 0.0063 42 1 3.2411 -3.6776 1.1897 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:33 Heat of formation + Delta-G solvation = 44.747078 kcal Electronic energy + Delta-G solvation = -26063.972536 eV Core-core repulsion = 22207.734189 eV Total energy + Delta-G solvation = -3856.238347 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.81191 -42.95484 -41.20218 -39.42045 -38.02803 -35.42292 -34.40579 -33.65784 -33.02989 -30.40377 -29.54150 -28.76561 -26.73947 -26.05376 -24.75335 -23.76685 -22.39691 -22.23007 -21.82445 -20.86560 -20.18395 -19.00614 -18.39428 -17.95456 -17.74252 -17.04884 -16.84458 -16.45888 -16.10783 -15.93051 -15.67748 -15.53008 -15.23733 -14.93136 -14.80514 -14.65030 -14.29449 -14.23756 -14.16798 -13.99688 -13.84398 -13.62230 -13.42357 -12.91859 -12.81258 -12.78440 -12.34848 -12.26970 -11.74619 -11.37069 -11.19609 -10.98367 -10.91469 -10.64918 -10.48747 -10.14363 -9.61413 -9.45142 -5.02858 0.18376 0.78181 1.15192 1.15331 1.36817 1.73674 1.89481 1.92455 2.07278 2.18429 2.22455 3.18357 3.37406 3.44149 3.47197 3.64276 3.71464 3.73931 3.80099 3.87863 4.06995 4.07774 4.11689 4.24861 4.28352 4.41373 4.50438 4.57809 4.60101 4.60813 4.66963 4.74259 4.75809 4.78362 4.84930 4.96635 4.99613 5.09072 5.15803 5.18403 5.35204 5.54731 5.82723 5.85481 6.31269 6.41210 6.60288 7.09996 7.15950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.271 4.271 4 C 0.591 3.409 5 O -0.572 6.572 6 N -0.697 5.697 7 C 0.111 3.889 8 H 0.092 0.908 9 C -0.147 4.147 10 C -0.117 4.117 11 H 0.089 0.911 12 C 0.111 3.889 13 N -0.452 5.452 14 C -0.048 4.048 15 C -0.067 4.067 16 N -0.547 5.547 17 C 0.174 3.826 18 C -0.117 4.117 19 C -0.149 4.149 20 C -0.059 4.059 21 C -0.024 4.024 22 O -0.538 6.538 23 Si 0.777 3.223 24 O -0.171 6.171 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.410 0.590 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.201 0.799 34 H 0.171 0.829 35 H 0.221 0.779 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.175 0.825 39 H 0.137 0.863 40 H 0.400 0.600 41 H -0.279 1.279 42 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -0.006 -7.668 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.275 4.275 4 C 0.380 3.620 5 O -0.453 6.453 6 N -0.347 5.347 7 C 0.005 3.995 8 H 0.110 0.890 9 C -0.186 4.186 10 C -0.136 4.136 11 H 0.107 0.893 12 C -0.010 4.010 13 N -0.133 5.133 14 C -0.181 4.181 15 C -0.214 4.214 16 N -0.267 5.267 17 C -0.109 4.109 18 C -0.156 4.156 19 C -0.168 4.168 20 C -0.107 4.107 21 C -0.134 4.134 22 O -0.347 6.347 23 Si 0.682 3.318 24 O -0.069 6.069 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.247 0.753 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.218 0.782 34 H 0.189 0.811 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.192 0.808 39 H 0.154 0.846 40 H 0.251 0.749 41 H -0.205 1.205 42 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 0.141 -0.662 -6.140 6.177 hybrid contribution 0.858 0.381 -0.001 0.939 sum 0.999 -0.281 -6.140 6.227 Atomic orbital electron populations 1.20716 0.82502 1.05376 1.05481 1.23251 0.94818 0.82977 0.95671 1.21216 0.94202 0.93547 1.18557 1.17347 0.85232 0.84391 0.75005 1.90757 1.17864 1.84485 1.52186 1.45380 1.09788 1.05173 1.74374 1.21917 0.99930 0.79816 0.97804 0.89030 1.23559 0.97143 1.01041 0.96814 1.22911 0.96759 0.96404 0.97492 0.89319 1.22237 1.00179 0.97799 0.80833 1.45758 1.07248 1.51746 1.08583 1.23153 0.86700 1.09723 0.98552 1.22634 0.96729 1.09250 0.92822 1.70244 1.01421 1.21109 1.33882 1.25383 1.00580 1.04968 0.79921 1.23285 0.96922 1.00098 0.95252 1.22760 0.96342 0.93692 1.04008 1.22919 0.82902 0.96018 1.08888 1.24440 0.89255 1.07007 0.92712 1.86533 1.38619 1.93337 1.16180 0.93295 0.78887 0.72400 0.87260 1.83678 1.16752 1.34991 1.71432 0.87772 0.88489 0.88654 0.75306 0.87393 0.93167 0.86766 0.86740 0.78186 0.81147 0.76227 0.89412 0.86108 0.80784 0.84553 0.74889 1.20503 1.22346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.00 9.89 71.24 0.70 0.70 16 2 C 0.09 0.28 7.37 25.26 0.19 0.47 16 3 C -0.27 -0.99 6.31 -18.99 -0.12 -1.11 16 4 C 0.59 3.14 7.81 86.65 0.68 3.82 16 5 O -0.57 -6.53 14.45 -4.07 -0.06 -6.59 16 6 N -0.70 0.88 5.26 -443.34 -2.33 -1.45 16 7 C 0.11 -0.40 4.32 45.52 0.20 -0.20 16 8 H 0.09 0.03 7.47 -2.39 -0.02 0.01 16 9 C -0.15 0.72 7.43 31.12 0.23 0.95 16 10 C -0.12 1.03 3.84 -10.27 -0.04 0.99 16 11 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 12 C 0.11 -1.06 5.99 86.38 0.52 -0.55 16 13 N -0.45 0.83 2.75 -529.05 -1.46 -0.62 16 14 C -0.05 0.00 11.58 83.09 0.96 0.96 16 15 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 16 N -0.55 -5.80 11.25 -200.30 -2.25 -8.05 16 17 C 0.17 0.56 12.56 180.26 2.26 2.83 16 18 C -0.12 1.22 7.39 31.12 0.23 1.45 16 19 C -0.15 0.02 10.46 23.65 0.25 0.26 16 20 C -0.06 0.01 6.20 24.76 0.15 0.16 16 21 C -0.02 0.07 2.98 71.23 0.21 0.29 16 22 O -0.54 2.13 12.86 -148.98 -1.92 0.21 16 23 Si 0.78 -2.10 32.08 68.60 2.20 0.10 16 24 O -0.17 -0.35 8.89 4.44 0.04 -0.31 16 25 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.09 0.33 6.49 -2.38 -0.02 0.32 16 28 H 0.41 -2.24 7.87 -92.71 -0.73 -2.97 16 29 H 0.11 -0.80 7.90 -2.39 -0.02 -0.82 16 30 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.11 -1.45 8.14 -2.39 -0.02 -1.47 16 32 H 0.11 -1.43 7.85 -2.39 -0.02 -1.45 16 33 H 0.20 -1.34 8.06 -2.91 -0.02 -1.37 16 34 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 35 H 0.22 -0.62 8.06 -2.91 -0.02 -0.64 16 36 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.12 -1.63 8.10 -2.39 -0.02 -1.65 16 38 H 0.17 -0.80 7.74 -2.91 -0.02 -0.82 16 39 H 0.14 -0.53 7.96 -2.39 -0.02 -0.55 16 40 H 0.40 -4.60 8.70 -74.06 -0.64 -5.24 16 41 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 42 H -0.30 -1.37 7.11 99.48 0.71 -0.67 16 Total: 0.00 -25.47 360.86 1.36 -24.11 By element: Atomic # 1 Polarization: -18.69 SS G_CDS: -0.28 Total: -18.97 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.41 Total: 11.58 kcal Atomic # 7 Polarization: -4.09 SS G_CDS: -6.04 Total: -10.13 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -1.94 Total: -6.68 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.20 Total: 0.10 kcal Total: -25.47 1.36 -24.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.858 kcal (2) G-P(sol) polarization free energy of solvation -25.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds