Wall clock time and date at job start Sun Mar 7 2021 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47076 * 2 1 4 4 C 1.50704 * 109.47296 * 240.00421 * 2 1 3 5 5 C 1.33744 * 125.11383 * 300.00116 * 4 2 1 6 6 C 1.37804 * 115.07932 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69861 * 0.02562 * 6 5 4 8 8 C 1.47555 * 125.27478 * 179.97438 * 7 6 5 9 9 C 1.39824 * 119.99767 * 359.74833 * 8 7 6 10 10 C 1.36564 * 120.00101 * 179.76536 * 9 8 7 11 11 C 1.39840 * 119.99866 * 0.50912 * 10 9 8 12 12 C 1.47555 * 120.00338 * 179.76539 * 11 10 9 13 13 O 1.21595 * 119.99972 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00133 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00465 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84549 * 23.80370 * 15 14 12 17 17 C 1.53777 * 113.61629 * 154.99664 * 15 14 12 18 18 C 1.53782 * 87.07855 * 89.12017 * 17 15 14 19 19 H 1.09001 * 113.61720 * 270.79961 * 18 17 15 20 20 C 1.53005 * 113.61609 * 139.98024 * 18 17 15 21 21 N 1.46494 * 109.47266 * 174.99844 * 20 18 17 22 22 C 1.36883 * 126.40170 * 90.00090 * 21 20 18 23 23 C 1.34658 * 106.82342 * 180.02562 * 22 21 20 24 24 N 1.34133 * 108.02039 * 359.97438 * 23 22 21 25 25 C 1.30499 * 109.25249 * 359.73150 * 24 23 22 26 26 C 1.53774 * 87.08398 * 25.43055 * 18 17 15 27 27 C 1.39830 * 119.99308 * 359.74174 * 11 10 9 28 28 C 1.36565 * 120.00220 * 0.02562 * 27 11 10 29 29 S 1.75853 * 125.12121 * 119.97076 * 4 2 1 30 30 H 0.96697 * 114.00010 * 299.99354 * 1 2 3 31 31 H 1.08999 * 109.47107 * 120.00421 * 2 1 3 32 32 H 1.48500 * 110.00020 * 300.00234 * 3 2 1 33 33 H 1.48500 * 109.99756 * 61.32084 * 3 2 1 34 34 H 1.07997 * 122.46347 * 359.70306 * 5 4 2 35 35 H 1.07998 * 122.65025 * 179.97438 * 6 5 4 36 36 H 1.07993 * 120.00158 * 359.97438 * 9 8 7 37 37 H 1.07995 * 120.00726 * 180.25621 * 10 9 8 38 38 H 0.97008 * 119.99816 * 0.02562 * 14 12 11 39 39 H 1.08998 * 113.61286 * 203.66264 * 17 15 14 40 40 H 1.08998 * 113.61864 * 334.57234 * 17 15 14 41 41 H 1.08995 * 109.47091 * 295.00226 * 20 18 17 42 42 H 1.09000 * 109.46676 * 55.00152 * 20 18 17 43 43 H 1.08001 * 126.58372 * 359.96503 * 22 21 20 44 44 H 1.07999 * 125.99248 * 179.97438 * 23 22 21 45 45 H 1.08005 * 125.64514 * 180.29120 * 25 24 23 46 46 H 1.09005 * 113.61778 * 220.01787 * 26 18 17 47 47 H 1.09007 * 113.61454 * 89.11735 * 26 18 17 48 48 H 1.08005 * 119.99849 * 179.97438 * 27 11 10 49 49 H 1.08004 * 120.00057 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6721 -1.9847 -1.5429 6 6 2.2372 -2.4240 -2.7205 7 6 2.9668 -1.4968 -3.3764 8 6 3.6721 -1.7149 -4.6539 9 6 3.6183 -2.9652 -5.2776 10 6 4.2671 -3.1658 -6.4624 11 6 4.9940 -2.1238 -7.0466 12 6 5.6993 -2.3419 -8.3242 13 8 6.3310 -1.4357 -8.8324 14 7 5.6433 -3.5456 -8.9279 15 6 6.3431 -3.7620 -10.1967 16 1 7.1739 -3.0722 -10.3448 17 6 6.7103 -5.2329 -10.4545 18 6 5.3350 -5.3764 -11.1274 19 1 4.5389 -5.6581 -10.4382 20 6 5.3582 -6.2372 -12.3921 21 7 3.9912 -6.4116 -12.8892 22 6 3.3414 -5.6011 -13.7805 23 6 2.1130 -6.1234 -13.9584 24 7 2.0156 -7.2234 -13.1970 25 6 3.1389 -7.4056 -12.5584 26 6 5.4026 -3.8661 -11.4089 27 6 5.0520 -0.8750 -6.4202 28 6 4.3993 -0.6732 -5.2378 29 16 2.9461 0.0117 -2.4721 30 1 -0.3933 0.4416 0.7651 31 1 1.7923 -0.5139 0.8899 32 1 1.5614 2.4679 -1.2085 33 1 1.5879 2.4585 1.2243 34 1 1.0680 -2.6238 -0.9161 35 1 2.1073 -3.4308 -3.0891 36 1 3.0609 -3.7714 -4.8240 37 1 4.2221 -4.1303 -6.9463 38 1 5.1391 -4.2684 -8.5227 39 1 7.5475 -5.3600 -11.1408 40 1 6.8147 -5.8230 -9.5441 41 1 5.9623 -5.7461 -13.1548 42 1 5.7876 -7.2119 -12.1602 43 1 3.7374 -4.7127 -14.2499 44 1 1.3416 -5.7263 -14.6015 45 1 3.3508 -8.2155 -11.8761 46 1 4.4513 -3.3528 -11.2689 47 1 5.8824 -3.6196 -12.3562 48 1 5.6138 -0.0703 -6.8712 49 1 4.4438 0.2915 -4.7542 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:38 Heat of formation + Delta-G solvation = 93.054908 kcal Electronic energy + Delta-G solvation = -31979.565855 eV Core-core repulsion = 27581.050791 eV Total energy + Delta-G solvation = -4398.515064 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.95121 -41.65191 -40.52349 -39.45809 -38.83786 -37.55144 -35.48271 -34.22366 -33.32872 -32.25718 -30.65505 -30.36893 -28.94248 -27.25856 -26.99199 -25.03973 -24.23465 -23.93790 -23.30479 -22.21860 -21.90597 -21.82563 -20.51447 -20.12676 -19.18690 -18.74724 -18.47190 -18.26442 -17.31176 -17.04000 -16.65062 -16.41719 -16.28653 -15.96931 -15.85025 -15.61537 -15.48975 -15.05483 -15.00083 -14.91933 -14.77771 -14.57310 -14.44055 -14.22042 -14.19369 -14.07563 -13.93787 -13.69919 -13.41113 -13.32070 -13.10656 -12.96628 -12.73074 -12.55020 -12.39895 -12.20536 -11.88351 -11.62408 -11.57864 -11.03928 -10.84142 -10.82777 -10.55013 -10.48544 -10.24571 -10.19608 -9.54378 -9.39825 -9.03938 -5.15715 -0.90563 0.22378 0.28988 0.36536 0.72951 1.13280 1.16264 1.48963 1.56193 1.80672 1.82784 1.92989 1.97056 2.33962 2.79990 3.11762 3.18178 3.21851 3.37849 3.45036 3.54139 3.59355 3.65237 3.70009 3.76132 3.82063 3.84998 3.94979 4.02407 4.11785 4.22570 4.23286 4.25383 4.39709 4.43239 4.43940 4.48106 4.56339 4.57787 4.62967 4.73017 4.80195 4.84011 4.85044 4.90063 4.96817 5.06424 5.18059 5.24972 5.26615 5.34259 5.40448 5.44258 5.67920 5.86435 6.27115 6.28303 6.33538 7.10144 7.21537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.035 4.035 3 Si 0.645 3.355 4 C -0.172 4.172 5 C -0.105 4.105 6 C -0.116 4.116 7 C -0.152 4.152 8 C 0.017 3.983 9 C -0.110 4.110 10 C -0.077 4.077 11 C -0.139 4.139 12 C 0.564 3.436 13 O -0.530 6.530 14 N -0.711 5.711 15 C 0.122 3.878 16 H 0.109 0.891 17 C -0.136 4.136 18 C -0.129 4.129 19 H 0.097 0.903 20 C 0.113 3.887 21 N -0.457 5.457 22 C -0.053 4.053 23 C -0.031 4.031 24 N -0.495 5.495 25 C 0.178 3.822 26 C -0.146 4.146 27 C -0.047 4.047 28 C -0.121 4.121 29 S 0.142 5.858 30 H 0.383 0.617 31 H 0.088 0.912 32 H -0.235 1.235 33 H -0.238 1.238 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.400 0.600 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.202 0.798 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.142 0.858 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -2.022 3.859 6.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.147 4.147 3 Si 0.543 3.457 4 C -0.289 4.289 5 C -0.135 4.135 6 C -0.147 4.147 7 C -0.269 4.269 8 C 0.015 3.985 9 C -0.130 4.130 10 C -0.096 4.096 11 C -0.142 4.142 12 C 0.352 3.648 13 O -0.407 6.407 14 N -0.363 5.363 15 C 0.016 3.984 16 H 0.127 0.873 17 C -0.175 4.175 18 C -0.149 4.149 19 H 0.115 0.885 20 C -0.009 4.009 21 N -0.140 5.140 22 C -0.186 4.186 23 C -0.179 4.179 24 N -0.213 5.213 25 C -0.104 4.104 26 C -0.184 4.184 27 C -0.066 4.066 28 C -0.139 4.139 29 S 0.409 5.591 30 H 0.232 0.768 31 H 0.105 0.895 32 H -0.159 1.159 33 H -0.161 1.161 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.236 0.764 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.189 0.811 44 H 0.186 0.814 45 H 0.219 0.781 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.160 0.840 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.611 0.160 2.861 5.429 hybrid contribution -1.377 -1.453 0.926 2.206 sum 3.234 -1.292 3.788 5.146 Atomic orbital electron populations 1.86604 1.17337 1.80069 1.49983 1.24015 0.84537 1.10006 0.96107 0.95294 0.91836 0.75377 0.83167 1.23833 1.06392 0.97898 1.00794 1.19977 1.01030 0.95041 0.97495 1.20365 0.98516 1.00532 0.95267 1.23064 1.06354 0.98081 0.99444 1.18295 0.94974 0.94036 0.91189 1.20869 1.00280 0.96403 0.95458 1.20936 0.95441 0.98055 0.95184 1.19960 1.02360 0.95684 0.96241 1.18214 0.80174 0.82248 0.84176 1.90813 1.42107 1.42099 1.65721 1.45567 1.53583 1.13601 1.23504 1.21787 0.95811 0.97618 0.83164 0.87320 1.23343 0.96813 0.95800 1.01525 1.23067 0.98976 0.96008 0.96805 0.88465 1.21960 0.80537 1.02070 0.96353 1.45572 1.13238 1.21379 1.33813 1.22737 0.95591 1.00351 0.99928 1.22347 0.96829 0.95388 1.03327 1.70315 1.22464 1.18010 1.10529 1.25016 0.86403 0.95387 1.03629 1.23520 1.01076 0.94936 0.98912 1.20943 0.95951 0.96200 0.93527 1.20986 0.97977 0.98795 0.96181 1.84104 1.48433 1.12316 1.14209 0.76838 0.89473 1.15900 1.16083 0.83743 0.83709 0.84769 0.85379 0.76377 0.87965 0.90112 0.88672 0.88511 0.81082 0.81441 0.78111 0.90681 0.88721 0.84034 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.34 12.83 -35.23 -0.45 -0.80 16 2 C -0.03 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.64 -0.56 30.96 -169.99 -5.26 -5.83 16 4 C -0.17 -0.16 5.76 -35.88 -0.21 -0.37 16 5 C -0.11 -0.08 10.00 -41.32 -0.41 -0.49 16 6 C -0.12 -0.02 9.64 -40.90 -0.39 -0.42 16 7 C -0.15 -0.13 6.37 -36.94 -0.24 -0.36 16 8 C 0.02 0.01 5.88 -104.91 -0.62 -0.61 16 9 C -0.11 0.10 9.48 -39.59 -0.38 -0.28 16 10 C -0.08 0.10 9.48 -39.59 -0.38 -0.27 16 11 C -0.14 -0.11 5.88 -104.90 -0.62 -0.73 16 12 C 0.56 1.03 7.76 -12.46 -0.10 0.93 16 13 O -0.53 -2.93 15.93 5.28 0.08 -2.85 16 14 N -0.71 0.96 5.21 -54.05 -0.28 0.68 16 15 C 0.12 -0.24 4.32 -67.12 -0.29 -0.53 16 16 H 0.11 -0.02 7.46 -51.93 -0.39 -0.41 16 17 C -0.14 0.63 7.39 -25.92 -0.19 0.43 16 18 C -0.13 0.53 3.84 -89.81 -0.34 0.18 16 19 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 20 C 0.11 -0.45 5.99 -4.04 -0.02 -0.48 16 21 N -0.46 0.33 2.75 -118.58 -0.33 0.01 16 22 C -0.05 -0.02 11.58 -16.56 -0.19 -0.21 16 23 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 24 N -0.50 -2.13 11.25 -14.67 -0.17 -2.29 16 25 C 0.18 0.17 12.56 -90.38 -1.14 -0.96 16 26 C -0.15 0.37 7.43 -25.92 -0.19 0.17 16 27 C -0.05 -0.06 9.53 -39.59 -0.38 -0.43 16 28 C -0.12 -0.07 9.54 -39.59 -0.38 -0.45 16 29 S 0.14 0.09 19.46 -107.50 -2.09 -2.01 16 30 H 0.38 -1.35 8.74 45.56 0.40 -0.95 16 31 H 0.09 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H -0.24 -0.53 7.11 56.52 0.40 -0.12 16 33 H -0.24 -0.10 7.11 56.52 0.40 0.31 16 34 H 0.14 -0.04 8.06 -52.49 -0.42 -0.47 16 35 H 0.15 -0.28 6.88 -52.49 -0.36 -0.64 16 36 H 0.13 -0.39 6.74 -52.49 -0.35 -0.74 16 37 H 0.13 -0.54 6.38 -52.49 -0.33 -0.87 16 38 H 0.40 -1.49 6.71 -40.82 -0.27 -1.76 16 39 H 0.10 -0.56 8.10 -51.93 -0.42 -0.98 16 40 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 41 H 0.09 -0.45 7.84 -51.93 -0.41 -0.86 16 42 H 0.10 -0.52 8.14 -51.93 -0.42 -0.94 16 43 H 0.17 -0.34 8.06 -52.49 -0.42 -0.77 16 44 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 45 H 0.20 -0.46 8.06 -52.48 -0.42 -0.89 16 46 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.09 -0.30 7.90 -51.93 -0.41 -0.71 16 48 H 0.14 0.16 7.64 -52.48 -0.40 -0.24 16 49 H 0.13 -0.08 7.26 -52.48 -0.38 -0.46 16 LS Contribution 424.28 15.07 6.39 6.39 Total: 0.00 -11.15 424.28 -14.99 -26.13 By element: Atomic # 1 Polarization: -8.08 SS G_CDS: -6.33 Total: -14.41 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -6.56 Total: -5.04 kcal Atomic # 7 Polarization: -0.83 SS G_CDS: -0.77 Total: -1.60 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.37 Total: -3.64 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: -5.26 Total: -5.83 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.09 Total: -2.01 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -11.15 -14.99 -26.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.189 kcal (2) G-P(sol) polarization free energy of solvation -11.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds