Wall clock time and date at job start Sun Mar 7 2021 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47076 * 2 1 4 4 C 1.50704 * 109.47296 * 240.00421 * 2 1 3 5 5 C 1.33744 * 125.11383 * 300.00116 * 4 2 1 6 6 C 1.37804 * 115.07932 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69861 * 0.02562 * 6 5 4 8 8 C 1.47555 * 125.27478 * 179.97438 * 7 6 5 9 9 C 1.39824 * 119.99767 * 359.74833 * 8 7 6 10 10 C 1.36564 * 120.00101 * 179.76536 * 9 8 7 11 11 C 1.39840 * 119.99866 * 0.50912 * 10 9 8 12 12 C 1.47555 * 120.00338 * 179.76539 * 11 10 9 13 13 O 1.21595 * 119.99972 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00133 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00465 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84549 * 23.80370 * 15 14 12 17 17 C 1.53777 * 113.61629 * 154.99664 * 15 14 12 18 18 C 1.53782 * 87.07855 * 89.12017 * 17 15 14 19 19 H 1.09001 * 113.61720 * 270.79961 * 18 17 15 20 20 C 1.53005 * 113.61609 * 139.98024 * 18 17 15 21 21 N 1.46494 * 109.47266 * 174.99844 * 20 18 17 22 22 C 1.36883 * 126.40170 * 90.00090 * 21 20 18 23 23 C 1.34658 * 106.82342 * 180.02562 * 22 21 20 24 24 N 1.34133 * 108.02039 * 359.97438 * 23 22 21 25 25 C 1.30499 * 109.25249 * 359.73150 * 24 23 22 26 26 C 1.53774 * 87.08398 * 25.43055 * 18 17 15 27 27 C 1.39830 * 119.99308 * 359.74174 * 11 10 9 28 28 C 1.36565 * 120.00220 * 0.02562 * 27 11 10 29 29 S 1.75853 * 125.12121 * 119.97076 * 4 2 1 30 30 H 0.96697 * 114.00010 * 299.99354 * 1 2 3 31 31 H 1.08999 * 109.47107 * 120.00421 * 2 1 3 32 32 H 1.48500 * 110.00020 * 300.00234 * 3 2 1 33 33 H 1.48500 * 109.99756 * 61.32084 * 3 2 1 34 34 H 1.07997 * 122.46347 * 359.70306 * 5 4 2 35 35 H 1.07998 * 122.65025 * 179.97438 * 6 5 4 36 36 H 1.07993 * 120.00158 * 359.97438 * 9 8 7 37 37 H 1.07995 * 120.00726 * 180.25621 * 10 9 8 38 38 H 0.97008 * 119.99816 * 0.02562 * 14 12 11 39 39 H 1.08998 * 113.61286 * 203.66264 * 17 15 14 40 40 H 1.08998 * 113.61864 * 334.57234 * 17 15 14 41 41 H 1.08995 * 109.47091 * 295.00226 * 20 18 17 42 42 H 1.09000 * 109.46676 * 55.00152 * 20 18 17 43 43 H 1.08001 * 126.58372 * 359.96503 * 22 21 20 44 44 H 1.07999 * 125.99248 * 179.97438 * 23 22 21 45 45 H 1.08005 * 125.64514 * 180.29120 * 25 24 23 46 46 H 1.09005 * 113.61778 * 220.01787 * 26 18 17 47 47 H 1.09007 * 113.61454 * 89.11735 * 26 18 17 48 48 H 1.08005 * 119.99849 * 179.97438 * 27 11 10 49 49 H 1.08004 * 120.00057 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6721 -1.9847 -1.5429 6 6 2.2372 -2.4240 -2.7205 7 6 2.9668 -1.4968 -3.3764 8 6 3.6721 -1.7149 -4.6539 9 6 3.6183 -2.9652 -5.2776 10 6 4.2671 -3.1658 -6.4624 11 6 4.9940 -2.1238 -7.0466 12 6 5.6993 -2.3419 -8.3242 13 8 6.3310 -1.4357 -8.8324 14 7 5.6433 -3.5456 -8.9279 15 6 6.3431 -3.7620 -10.1967 16 1 7.1739 -3.0722 -10.3448 17 6 6.7103 -5.2329 -10.4545 18 6 5.3350 -5.3764 -11.1274 19 1 4.5389 -5.6581 -10.4382 20 6 5.3582 -6.2372 -12.3921 21 7 3.9912 -6.4116 -12.8892 22 6 3.3414 -5.6011 -13.7805 23 6 2.1130 -6.1234 -13.9584 24 7 2.0156 -7.2234 -13.1970 25 6 3.1389 -7.4056 -12.5584 26 6 5.4026 -3.8661 -11.4089 27 6 5.0520 -0.8750 -6.4202 28 6 4.3993 -0.6732 -5.2378 29 16 2.9461 0.0117 -2.4721 30 1 -0.3933 0.4416 0.7651 31 1 1.7923 -0.5139 0.8899 32 1 1.5614 2.4679 -1.2085 33 1 1.5879 2.4585 1.2243 34 1 1.0680 -2.6238 -0.9161 35 1 2.1073 -3.4308 -3.0891 36 1 3.0609 -3.7714 -4.8240 37 1 4.2221 -4.1303 -6.9463 38 1 5.1391 -4.2684 -8.5227 39 1 7.5475 -5.3600 -11.1408 40 1 6.8147 -5.8230 -9.5441 41 1 5.9623 -5.7461 -13.1548 42 1 5.7876 -7.2119 -12.1602 43 1 3.7374 -4.7127 -14.2499 44 1 1.3416 -5.7263 -14.6015 45 1 3.3508 -8.2155 -11.8761 46 1 4.4513 -3.3528 -11.2689 47 1 5.8824 -3.6196 -12.3562 48 1 5.6138 -0.0703 -6.8712 49 1 4.4438 0.2915 -4.7542 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:37 Heat of formation + Delta-G solvation = 96.340411 kcal Electronic energy + Delta-G solvation = -31979.423385 eV Core-core repulsion = 27581.050791 eV Total energy + Delta-G solvation = -4398.372594 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.92827 -41.63970 -40.42147 -39.44041 -38.84738 -37.53621 -35.45373 -34.22206 -33.30564 -32.22159 -30.63466 -30.37907 -28.80561 -27.23333 -26.72165 -24.98776 -24.14871 -23.88125 -23.26966 -22.23670 -21.89753 -21.77594 -20.35952 -20.11162 -19.14249 -18.71453 -18.41471 -18.20397 -17.25987 -17.01223 -16.53473 -16.33605 -16.25791 -16.03545 -15.76713 -15.59076 -15.45066 -15.00018 -14.95934 -14.89738 -14.69714 -14.55746 -14.36248 -14.20586 -14.17795 -14.09883 -13.75577 -13.46415 -13.37497 -13.30676 -13.09695 -12.77320 -12.73002 -12.40994 -12.33701 -12.18847 -11.70805 -11.61648 -11.34335 -11.18374 -10.89449 -10.85344 -10.52272 -10.45325 -10.21513 -10.15116 -9.56608 -9.42794 -9.03944 -5.11041 -0.91164 0.21665 0.31434 0.36492 0.74263 1.16252 1.18271 1.50383 1.54317 1.83290 1.92530 1.95369 1.99411 2.25310 2.79909 3.29694 3.38330 3.40763 3.48790 3.64324 3.67535 3.72721 3.75751 3.80992 3.82577 3.91569 4.06232 4.17206 4.19625 4.27945 4.29491 4.35998 4.45171 4.50703 4.55400 4.60653 4.61294 4.69622 4.76470 4.81108 4.83281 4.89643 4.98050 5.00338 5.01521 5.08335 5.14711 5.20129 5.26771 5.30221 5.37642 5.46829 5.53824 5.70912 5.84253 6.35541 6.39517 6.50981 7.07746 7.18666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.037 4.037 3 Si 0.703 3.297 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.162 4.162 8 C 0.009 3.991 9 C -0.109 4.109 10 C -0.067 4.067 11 C -0.152 4.152 12 C 0.560 3.440 13 O -0.579 6.579 14 N -0.695 5.695 15 C 0.107 3.893 16 H 0.086 0.914 17 C -0.117 4.117 18 C -0.116 4.116 19 H 0.095 0.905 20 C 0.110 3.890 21 N -0.451 5.451 22 C -0.047 4.047 23 C -0.067 4.067 24 N -0.546 5.546 25 C 0.175 3.825 26 C -0.147 4.147 27 C -0.063 4.063 28 C -0.129 4.129 29 S 0.122 5.878 30 H 0.399 0.601 31 H 0.113 0.887 32 H -0.285 1.285 33 H -0.252 1.252 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.414 0.586 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.193 0.807 44 H 0.168 0.832 45 H 0.230 0.770 46 H 0.052 0.948 47 H 0.102 0.898 48 H 0.130 0.870 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -4.572 4.659 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.149 4.149 3 Si 0.606 3.394 4 C -0.301 4.301 5 C -0.143 4.143 6 C -0.145 4.145 7 C -0.279 4.279 8 C 0.006 3.994 9 C -0.129 4.129 10 C -0.086 4.086 11 C -0.156 4.156 12 C 0.349 3.651 13 O -0.460 6.460 14 N -0.347 5.347 15 C 0.002 3.998 16 H 0.105 0.895 17 C -0.155 4.155 18 C -0.135 4.135 19 H 0.114 0.886 20 C -0.011 4.011 21 N -0.133 5.133 22 C -0.181 4.181 23 C -0.214 4.214 24 N -0.265 5.265 25 C -0.107 4.107 26 C -0.185 4.185 27 C -0.082 4.082 28 C -0.148 4.148 29 S 0.389 5.611 30 H 0.250 0.750 31 H 0.131 0.869 32 H -0.211 1.211 33 H -0.176 1.176 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.252 0.748 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.210 0.790 44 H 0.186 0.814 45 H 0.246 0.754 46 H 0.071 0.929 47 H 0.121 0.879 48 H 0.148 0.852 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.206 -2.429 3.686 6.825 hybrid contribution -1.584 -0.614 0.667 1.825 sum 3.621 -3.042 4.353 6.428 Atomic orbital electron populations 1.86555 1.17915 1.80490 1.51392 1.24126 0.84180 1.10034 0.96575 0.94585 0.91037 0.74169 0.79628 1.24092 1.06528 0.98282 1.01174 1.20206 1.01142 0.95100 0.97897 1.20638 0.97634 1.01390 0.94847 1.23169 1.06986 0.98036 0.99718 1.18455 0.94960 0.94662 0.91283 1.21194 0.99980 0.96381 0.95325 1.21236 0.93882 0.98616 0.94827 1.20019 1.03186 0.96231 0.96126 1.18452 0.79691 0.82540 0.84450 1.90783 1.44403 1.43759 1.67047 1.45475 1.52881 1.12906 1.23411 1.21938 0.95512 0.99336 0.83050 0.89538 1.23283 0.96855 0.93150 1.02205 1.22935 0.99293 0.94426 0.96814 0.88628 1.22233 0.78910 1.03494 0.96468 1.45739 1.14117 1.20453 1.32998 1.23039 0.94948 1.00606 0.99518 1.22578 0.98259 0.96096 1.04487 1.70242 1.24718 1.19338 1.12223 1.25538 0.85872 0.96070 1.03253 1.23535 0.99761 0.96266 0.98984 1.20946 0.96594 0.96562 0.94081 1.21038 0.98319 0.99327 0.96129 1.84164 1.48910 1.13129 1.14859 0.74962 0.86946 1.21137 1.17610 0.82703 0.81391 0.82185 0.82122 0.74778 0.86393 0.88884 0.87434 0.86200 0.79021 0.81445 0.75364 0.92939 0.87950 0.85226 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.54 12.83 -148.98 -1.91 -2.45 16 2 C -0.04 0.05 2.95 71.24 0.21 0.26 16 3 Si 0.70 -0.72 30.96 68.60 2.12 1.40 16 4 C -0.18 -0.34 5.76 24.67 0.14 -0.20 16 5 C -0.11 -0.08 10.00 21.15 0.21 0.13 16 6 C -0.11 0.07 9.64 21.42 0.21 0.28 16 7 C -0.16 -0.27 6.37 23.98 0.15 -0.12 16 8 C 0.01 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.11 0.34 9.48 22.26 0.21 0.55 16 10 C -0.07 0.25 9.48 22.27 0.21 0.46 16 11 C -0.15 -0.36 5.88 -20.05 -0.12 -0.48 16 12 C 0.56 2.73 7.76 86.70 0.67 3.40 16 13 O -0.58 -7.91 15.93 -4.02 -0.06 -7.98 16 14 N -0.70 2.02 5.21 -443.19 -2.31 -0.29 16 15 C 0.11 -0.44 4.32 45.52 0.20 -0.24 16 16 H 0.09 0.07 7.46 -2.39 -0.02 0.05 16 17 C -0.12 1.34 7.39 31.12 0.23 1.57 16 18 C -0.12 1.18 3.84 -10.27 -0.04 1.14 16 19 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 20 C 0.11 -1.16 5.99 86.38 0.52 -0.64 16 21 N -0.45 1.29 2.75 -529.08 -1.46 -0.17 16 22 C -0.05 -0.02 11.58 83.08 0.96 0.94 16 23 C -0.07 -0.42 11.87 83.52 0.99 0.57 16 24 N -0.55 -5.03 11.25 -200.31 -2.25 -7.29 16 25 C 0.18 0.19 12.56 180.26 2.26 2.45 16 26 C -0.15 0.80 7.43 31.12 0.23 1.03 16 27 C -0.06 -0.28 9.53 22.26 0.21 -0.07 16 28 C -0.13 -0.36 9.54 22.26 0.21 -0.15 16 29 S 0.12 0.27 19.46 -56.49 -1.10 -0.83 16 30 H 0.40 -2.97 8.74 -74.06 -0.65 -3.61 16 31 H 0.11 -0.70 7.96 -2.39 -0.02 -0.72 16 32 H -0.28 -1.98 7.11 99.48 0.71 -1.28 16 33 H -0.25 -0.27 7.11 99.48 0.71 0.43 16 34 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 35 H 0.17 -1.04 6.88 -2.91 -0.02 -1.06 16 36 H 0.16 -1.38 6.74 -2.91 -0.02 -1.40 16 37 H 0.16 -1.78 6.38 -2.91 -0.02 -1.80 16 38 H 0.41 -3.70 6.71 -92.70 -0.62 -4.33 16 39 H 0.12 -1.65 8.10 -2.39 -0.02 -1.66 16 40 H 0.09 -1.21 8.14 -2.39 -0.02 -1.23 16 41 H 0.11 -1.33 7.84 -2.39 -0.02 -1.35 16 42 H 0.12 -1.73 8.14 -2.39 -0.02 -1.75 16 43 H 0.19 -0.93 8.06 -2.91 -0.02 -0.95 16 44 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.23 -1.48 8.06 -2.91 -0.02 -1.50 16 46 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 47 H 0.10 -0.72 7.90 -2.38 -0.02 -0.74 16 48 H 0.13 0.76 7.64 -2.91 -0.02 0.74 16 49 H 0.13 0.16 7.26 -2.91 -0.02 0.13 16 Total: 0.00 -29.80 424.28 0.37 -29.44 By element: Atomic # 1 Polarization: -22.39 SS G_CDS: -0.22 Total: -22.62 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 7.56 Total: 10.78 kcal Atomic # 7 Polarization: -1.73 SS G_CDS: -6.02 Total: -7.74 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.98 Total: -10.42 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.12 Total: 1.40 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.10 Total: -0.83 kcal Total: -29.80 0.37 -29.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.775 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds