Wall clock time and date at job start Sun Mar 7 2021 04:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.46898 * 2 1 4 4 C 1.50693 * 109.47434 * 120.00245 * 2 1 3 5 5 C 1.38507 * 119.80584 * 244.99809 * 4 2 1 6 6 C 1.37831 * 120.30106 * 180.02562 * 5 4 2 7 7 C 1.39672 * 119.90725 * 0.02562 * 6 5 4 8 8 C 1.47537 * 120.18920 * 179.97438 * 7 6 5 9 9 O 1.21593 * 119.99856 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00133 * 359.72637 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27865 * 10 8 7 12 12 H 1.08994 * 112.85022 * 336.19146 * 11 10 8 13 13 C 1.53783 * 113.61316 * 107.50055 * 11 10 8 14 14 C 1.53783 * 87.07906 * 89.11585 * 13 11 10 15 15 H 1.09003 * 113.68860 * 270.86321 * 14 13 11 16 16 C 1.52997 * 113.61314 * 139.98325 * 14 13 11 17 17 N 1.46500 * 109.47442 * 87.49594 * 16 14 13 18 18 C 1.36879 * 126.39267 * 90.00070 * 17 16 14 19 19 C 1.34673 * 106.81440 * 180.02562 * 18 17 16 20 20 N 1.34125 * 108.01972 * 359.97438 * 19 18 17 21 21 C 1.30495 * 109.25722 * 359.72457 * 20 19 18 22 22 C 1.53774 * 87.08299 * 25.43119 * 14 13 11 23 23 C 1.40171 * 119.61674 * 0.25364 * 7 6 5 24 24 O 1.35650 * 120.14957 * 179.72547 * 23 7 6 25 25 C 1.38105 * 119.80770 * 65.02473 * 4 2 1 26 26 H 0.96700 * 113.99434 * 299.99228 * 1 2 3 27 27 H 1.09002 * 109.47106 * 240.00484 * 2 1 3 28 28 H 1.48497 * 109.99706 * 178.68474 * 3 2 1 29 29 H 1.48492 * 109.99938 * 300.00346 * 3 2 1 30 30 H 1.07995 * 119.84729 * 0.02562 * 5 4 2 31 31 H 1.08001 * 120.04627 * 180.02562 * 6 5 4 32 32 H 0.97000 * 119.99736 * 0.27139 * 10 8 7 33 33 H 1.09003 * 113.60807 * 203.66362 * 13 11 10 34 34 H 1.08996 * 113.61699 * 334.56556 * 13 11 10 35 35 H 1.09004 * 109.47069 * 207.50006 * 16 14 13 36 36 H 1.09000 * 109.47209 * 327.49532 * 16 14 13 37 37 H 1.07998 * 126.59521 * 359.96888 * 18 17 16 38 38 H 1.07998 * 125.98800 * 180.02562 * 19 18 17 39 39 H 1.08002 * 125.65391 * 180.29099 * 21 20 19 40 40 H 1.09004 * 113.61080 * 220.01891 * 22 14 13 41 41 H 1.08997 * 113.69550 * 89.13214 * 22 14 13 42 42 H 0.96704 * 113.99890 * 90.00592 * 24 23 7 43 43 H 1.07998 * 119.95139 * 359.95251 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 2.6398 -0.0070 2.1904 6 6 3.1045 -0.6467 3.3194 7 6 2.8611 -2.0105 3.4971 8 6 3.3561 -2.7016 4.7029 9 8 3.1426 -3.8891 4.8539 10 7 4.0502 -2.0180 5.6343 11 6 4.5469 -2.7056 6.8288 12 1 3.9785 -3.6046 7.0668 13 6 6.0698 -2.9197 6.8277 14 6 6.1844 -1.5446 7.5066 15 1 6.2629 -0.7146 6.8042 16 6 7.2438 -1.4918 8.6091 17 7 8.5429 -1.1535 8.0224 18 6 9.0524 0.1050 7.8484 19 6 10.2636 -0.0406 7.2778 20 7 10.4876 -1.3521 7.1087 21 6 9.4639 -2.0251 7.5581 22 6 4.7579 -1.7732 8.0333 23 6 2.1488 -2.7201 2.5203 24 8 1.9111 -4.0461 2.6792 25 6 1.6832 -2.0591 1.3938 26 1 -0.3932 0.4416 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 3.5345 1.7703 0.0320 29 1 1.5614 2.4679 -1.2084 30 1 2.8289 1.0474 2.0538 31 1 3.6561 -0.0941 4.0657 32 1 4.2208 -1.0708 5.5137 33 1 6.3948 -3.7467 7.4590 34 1 6.5056 -2.9514 5.8292 35 1 6.9678 -0.7339 9.3423 36 1 7.3081 -2.4638 9.0981 37 1 8.5746 1.0358 8.1161 38 1 10.9368 0.7586 7.0051 39 1 9.3677 -3.1008 7.5561 40 1 4.1346 -0.8793 8.0080 41 1 4.7228 -2.2865 8.9942 42 1 1.0856 -4.2450 3.1420 43 1 1.1298 -2.6006 0.6409 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:42 Heat of formation + Delta-G solvation = 17.124762 kcal Electronic energy + Delta-G solvation = -27349.350216 eV Core-core repulsion = 23363.687935 eV Total energy + Delta-G solvation = -3985.662281 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.93383 -41.80227 -40.66860 -39.26920 -38.39550 -37.16135 -35.37523 -34.09273 -32.50081 -31.13876 -30.36851 -28.90551 -27.44518 -26.70612 -24.50352 -23.93434 -23.37314 -22.23903 -21.83383 -21.78158 -20.35210 -19.44311 -18.84470 -18.27057 -18.19666 -17.34207 -16.87848 -16.52600 -16.40880 -16.26243 -15.95717 -15.72804 -15.56240 -15.27493 -15.17379 -14.91966 -14.75303 -14.65694 -14.36612 -14.20503 -13.86146 -13.63207 -13.41150 -13.24967 -12.96947 -12.76864 -12.33357 -12.32297 -12.21422 -11.76962 -11.67675 -11.33529 -11.00094 -10.88585 -10.50734 -10.46792 -10.24383 -10.02915 -9.80833 -9.42238 -5.01126 -0.45260 0.11280 1.17940 1.26511 1.62373 1.68676 1.94812 1.98601 1.99431 2.25039 2.54067 3.08592 3.38825 3.41848 3.49116 3.52585 3.64954 3.72409 3.75768 3.83103 3.90243 4.05302 4.10562 4.14624 4.23394 4.28128 4.34694 4.52101 4.58281 4.63241 4.69850 4.72812 4.77477 4.80956 4.83805 4.98095 4.99937 5.02777 5.10651 5.16872 5.21325 5.37906 5.55026 5.57451 5.85912 6.33481 6.42320 6.68284 6.74090 7.12601 7.18810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.085 4.085 3 Si 0.792 3.208 4 C -0.073 4.073 5 C -0.129 4.129 6 C -0.053 4.053 7 C -0.181 4.181 8 C 0.557 3.443 9 O -0.563 6.563 10 N -0.696 5.696 11 C 0.110 3.890 12 H 0.086 0.914 13 C -0.151 4.151 14 C -0.115 4.115 15 H 0.095 0.905 16 C 0.110 3.890 17 N -0.451 5.451 18 C -0.044 4.044 19 C -0.069 4.069 20 N -0.548 5.548 21 C 0.172 3.828 22 C -0.115 4.115 23 C 0.152 3.848 24 O -0.499 6.499 25 C -0.141 4.141 26 H 0.398 0.602 27 H 0.106 0.894 28 H -0.280 1.280 29 H -0.303 1.303 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.413 0.587 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.204 0.796 38 H 0.171 0.829 39 H 0.218 0.782 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.408 0.592 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 7.987 6.773 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.697 3.303 4 C -0.074 4.074 5 C -0.147 4.147 6 C -0.071 4.071 7 C -0.184 4.184 8 C 0.346 3.654 9 O -0.442 6.442 10 N -0.349 5.349 11 C 0.004 3.996 12 H 0.104 0.896 13 C -0.189 4.189 14 C -0.134 4.134 15 H 0.114 0.886 16 C -0.011 4.011 17 N -0.133 5.133 18 C -0.178 4.178 19 C -0.216 4.216 20 N -0.267 5.267 21 C -0.111 4.111 22 C -0.153 4.153 23 C 0.106 3.894 24 O -0.312 6.312 25 C -0.160 4.160 26 H 0.248 0.752 27 H 0.123 0.877 28 H -0.207 1.207 29 H -0.231 1.231 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.221 0.779 38 H 0.189 0.811 39 H 0.235 0.765 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.268 0.732 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.608 6.957 5.381 9.506 hybrid contribution -0.773 -0.434 -0.248 0.920 sum -4.381 6.523 5.134 9.386 Atomic orbital electron populations 1.86508 1.16846 1.82239 1.50583 1.25417 0.85645 1.11641 0.96687 0.93728 0.77774 0.73865 0.84962 1.20578 0.96514 0.93606 0.96682 1.21238 0.98775 1.01077 0.93568 1.21492 0.96313 0.91358 0.97952 1.20453 1.06469 0.95605 0.95921 1.18311 0.77854 0.86241 0.83023 1.90813 1.58702 1.16486 1.78230 1.45460 1.55156 1.13514 1.20767 1.21899 0.94802 0.97251 0.85622 0.89587 1.23572 0.95911 0.98301 1.01136 1.22924 0.94915 0.97962 0.97566 0.88627 1.22244 0.78192 1.04995 0.95705 1.45759 1.16088 1.06212 1.45225 1.23174 0.97225 0.89825 1.07594 1.22644 0.98247 0.93714 1.06967 1.70235 1.27450 1.06055 1.22990 1.25333 0.86107 0.98635 1.00980 1.23272 0.94267 1.00209 0.97586 1.18763 0.94823 0.83249 0.92612 1.84721 1.47139 1.19022 1.80337 1.21353 1.01636 0.94731 0.98272 0.75199 0.87656 1.20710 1.23085 0.81734 0.81425 0.74849 0.87862 0.93237 0.86528 0.87115 0.77879 0.81150 0.76519 0.88736 0.86424 0.73237 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.19 12.83 -148.98 -1.91 -0.72 16 2 C -0.08 0.25 2.79 71.23 0.20 0.45 16 3 Si 0.79 -4.64 29.78 68.60 2.04 -2.60 16 4 C -0.07 0.18 5.35 -19.83 -0.11 0.07 16 5 C -0.13 0.86 8.64 22.24 0.19 1.05 16 6 C -0.05 0.32 9.54 22.52 0.21 0.53 16 7 C -0.18 -0.28 5.89 -20.01 -0.12 -0.40 16 8 C 0.56 2.41 7.76 86.70 0.67 3.08 16 9 O -0.56 -7.41 14.76 16.91 0.25 -7.17 16 10 N -0.70 2.65 5.21 -443.19 -2.31 0.34 16 11 C 0.11 -0.52 4.32 45.52 0.20 -0.32 16 12 H 0.09 0.02 7.46 -2.39 -0.02 0.00 16 13 C -0.15 0.82 7.43 31.12 0.23 1.05 16 14 C -0.11 1.22 3.84 -10.27 -0.04 1.18 16 15 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 16 C 0.11 -1.19 5.99 86.38 0.52 -0.67 16 17 N -0.45 1.35 2.75 -529.07 -1.46 -0.11 16 18 C -0.04 0.07 11.58 83.09 0.96 1.03 16 19 C -0.07 -0.37 11.87 83.52 0.99 0.63 16 20 N -0.55 -5.46 11.25 -200.31 -2.25 -7.71 16 21 C 0.17 0.46 12.56 180.26 2.26 2.73 16 22 C -0.11 1.42 7.39 31.12 0.23 1.65 16 23 C 0.15 0.72 6.72 22.84 0.15 0.87 16 24 O -0.50 -3.92 11.58 -68.74 -0.80 -4.71 16 25 C -0.14 -0.28 9.60 22.34 0.21 -0.07 16 26 H 0.40 -4.38 8.70 -74.06 -0.64 -5.03 16 27 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 28 H -0.28 0.43 7.11 99.48 0.71 1.14 16 29 H -0.30 -0.81 7.11 99.48 0.71 -0.11 16 30 H 0.17 -2.09 4.88 -2.91 -0.01 -2.10 16 31 H 0.17 -2.32 6.40 -2.91 -0.02 -2.33 16 32 H 0.41 -4.24 6.73 -92.71 -0.62 -4.86 16 33 H 0.10 -0.74 7.90 -2.39 -0.02 -0.76 16 34 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.12 -1.68 8.14 -2.38 -0.02 -1.70 16 36 H 0.11 -1.44 7.84 -2.39 -0.02 -1.46 16 37 H 0.20 -1.79 8.06 -2.91 -0.02 -1.82 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 39 H 0.22 -0.60 8.06 -2.91 -0.02 -0.63 16 40 H 0.09 -1.35 8.14 -2.38 -0.02 -1.37 16 41 H 0.12 -1.73 8.10 -2.39 -0.02 -1.75 16 42 H 0.41 0.22 9.06 -74.05 -0.67 -0.45 16 43 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -32.87 363.49 -0.48 -33.35 By element: Atomic # 1 Polarization: -22.71 SS G_CDS: -0.82 Total: -23.53 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.78 Total: 12.86 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -6.02 Total: -7.48 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -2.46 Total: -12.60 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 2.04 Total: -2.60 kcal Total: -32.87 -0.48 -33.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.474 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds