Wall clock time and date at job start Sun Mar 7 2021 04:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37783 * 119.84754 * 2 1 4 4 C 1.39704 * 119.90781 * 180.29725 * 3 2 1 5 5 C 1.47544 * 120.19495 * 179.70135 * 4 3 2 6 6 O 1.21583 * 119.99904 * 179.72838 * 5 4 3 7 7 N 1.34771 * 119.99655 * 359.72455 * 5 4 3 8 8 C 1.46499 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.09000 * 112.84849 * 336.19231 * 8 7 5 10 10 C 1.53779 * 113.61746 * 107.50534 * 8 7 5 11 11 C 1.53779 * 87.08402 * 89.11614 * 10 8 7 12 12 H 1.09002 * 113.61557 * 270.88569 * 11 10 8 13 13 C 1.52994 * 113.61529 * 139.98073 * 11 10 8 14 14 N 1.46502 * 109.47057 * 87.50494 * 13 11 10 15 15 C 1.36879 * 126.39821 * 89.99896 * 14 13 11 16 16 C 1.34673 * 106.81695 * 180.02562 * 15 14 13 17 17 N 1.34129 * 108.02027 * 0.02562 * 16 15 14 18 18 C 1.30497 * 109.25635 * 359.72305 * 17 16 15 19 19 C 1.53784 * 87.08045 * 25.43458 * 11 10 8 20 20 C 1.40138 * 119.61465 * 359.42773 * 4 3 2 21 21 O 1.35652 * 120.15040 * 180.29633 * 20 4 3 22 22 C 1.38705 * 119.69922 * 0.27612 * 20 4 3 23 23 C 1.50701 * 119.95852 * 180.02562 * 22 20 4 24 24 O 1.42898 * 109.47222 * 285.00073 * 23 22 20 25 25 Si 1.86298 * 109.47161 * 164.99787 * 23 22 20 26 26 C 1.38045 * 120.08611 * 359.97438 * 22 20 4 27 27 H 1.08996 * 109.46602 * 270.29646 * 1 2 3 28 28 H 1.09000 * 109.47382 * 30.30000 * 1 2 3 29 29 H 1.09000 * 109.46810 * 150.29967 * 1 2 3 30 30 H 1.08008 * 120.05054 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00748 * 0.02562 * 7 5 4 32 32 H 1.09006 * 113.61280 * 203.66438 * 10 8 7 33 33 H 1.08999 * 113.61062 * 334.48192 * 10 8 7 34 34 H 1.08994 * 109.47510 * 207.50031 * 13 11 10 35 35 H 1.09001 * 109.47575 * 327.50582 * 13 11 10 36 36 H 1.07999 * 126.59322 * 359.96955 * 15 14 13 37 37 H 1.08003 * 125.98806 * 179.97438 * 16 15 14 38 38 H 1.08005 * 125.65230 * 180.29484 * 18 17 16 39 39 H 1.09004 * 113.61451 * 220.02152 * 19 11 10 40 40 H 1.08994 * 113.61477 * 89.11454 * 19 11 10 41 41 H 0.96693 * 114.00323 * 90.00167 * 21 20 4 42 42 H 1.09004 * 109.47155 * 44.99609 * 23 22 20 43 43 H 0.96700 * 114.00014 * 299.99932 * 24 23 22 44 44 H 1.48503 * 110.00112 * 180.02562 * 25 23 22 45 45 H 1.48501 * 110.00089 * 301.31802 * 25 23 22 46 46 H 1.08007 * 119.80910 * 180.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 -0.0063 5 6 4.3305 2.4726 -0.0130 6 8 5.5464 2.4697 -0.0134 7 7 3.6593 3.6412 -0.0186 8 6 4.3947 4.9083 -0.0258 9 1 5.4023 4.8151 0.3794 10 6 4.3365 5.6467 -1.3734 11 6 3.0598 6.3294 -0.8549 12 1 2.1476 5.7752 -1.0762 13 6 2.9621 7.8101 -1.2271 14 7 2.3296 7.9424 -2.5419 15 6 0.9895 8.0716 -2.7893 16 6 0.8469 8.1628 -4.1253 17 7 2.0666 8.0907 -4.6786 18 6 2.9601 7.9642 -3.7359 19 6 3.5999 6.0852 0.5641 20 6 4.2837 -0.0210 -0.0004 21 8 5.6402 -0.0322 -0.0003 22 6 3.5771 -1.2146 0.0058 23 6 4.3173 -2.5273 0.0128 24 8 4.8551 -2.7778 -1.2872 25 14 3.1445 -3.8991 0.4745 26 6 2.1967 -1.2016 0.0067 27 1 -0.3632 0.0053 1.0276 28 1 -0.3634 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5092 30 1 1.6511 2.1295 0.0004 31 1 2.6893 3.6436 -0.0179 32 1 5.1668 6.3353 -1.5303 33 1 4.1660 4.9882 -2.2251 34 1 2.3634 8.3334 -0.4817 35 1 3.9618 8.2434 -1.2596 36 1 0.1985 8.0949 -2.0543 37 1 -0.0861 8.2736 -4.6579 38 1 4.0269 7.8875 -3.8859 39 1 2.8334 5.7809 1.2768 40 1 4.2289 6.8936 0.9369 41 1 6.0335 -0.0312 0.8830 42 1 5.1288 -2.4830 0.7393 43 1 4.1882 -2.8300 -1.9854 44 1 3.8624 -5.1990 0.4856 45 1 2.5541 -3.6342 1.8112 46 1 1.6510 -2.1337 0.0120 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:46 Heat of formation + Delta-G solvation = 12.254384 kcal Electronic energy + Delta-G solvation = -29673.676350 eV Core-core repulsion = 25532.265255 eV Total energy + Delta-G solvation = -4141.411095 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93932 -41.89207 -40.78755 -39.28343 -38.08275 -37.64566 -35.40730 -34.14600 -33.05481 -32.50507 -30.37039 -28.84215 -27.52575 -26.82012 -26.74885 -25.53488 -23.90465 -22.24656 -22.06074 -21.82072 -21.65812 -20.37229 -19.63969 -18.62781 -18.26763 -17.88466 -17.48578 -16.87428 -16.76946 -16.47254 -16.08045 -15.93386 -15.76619 -15.48235 -15.28282 -15.07347 -14.89042 -14.78576 -14.58448 -14.40686 -14.21290 -14.20060 -13.67445 -13.64138 -13.43826 -13.33655 -12.86566 -12.81451 -12.56544 -12.35044 -12.21441 -12.12250 -11.80596 -11.71535 -11.37003 -11.04667 -10.89104 -10.48607 -10.42465 -10.28747 -10.03720 -9.53196 -9.42585 -5.05309 -0.38881 0.03951 1.17328 1.23939 1.61277 1.65684 1.91056 1.94062 1.99497 2.24848 2.51861 3.12289 3.35431 3.38628 3.45993 3.49335 3.61719 3.70080 3.75794 3.80534 3.89905 4.08191 4.09634 4.13086 4.15260 4.25350 4.31058 4.45498 4.51992 4.59039 4.62707 4.67567 4.73922 4.78075 4.80728 4.81538 4.90801 4.95021 4.96574 4.99214 5.11869 5.16053 5.25655 5.37176 5.40445 5.52329 5.66328 5.85597 6.32567 6.38331 6.65738 6.73127 7.09246 7.18386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.063 4.063 4 C -0.183 4.183 5 C 0.557 3.443 6 O -0.564 6.564 7 N -0.697 5.697 8 C 0.108 3.892 9 H 0.084 0.916 10 C -0.149 4.149 11 C -0.113 4.113 12 H 0.095 0.905 13 C 0.110 3.890 14 N -0.451 5.451 15 C -0.045 4.045 16 C -0.068 4.068 17 N -0.547 5.547 18 C 0.172 3.828 19 C -0.116 4.116 20 C 0.159 3.841 21 O -0.492 6.492 22 C -0.159 4.159 23 C -0.076 4.076 24 O -0.555 6.555 25 Si 0.791 3.209 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.204 0.796 37 H 0.172 0.828 38 H 0.218 0.782 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.392 0.608 44 H -0.301 1.301 45 H -0.275 1.275 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 1.123 6.184 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.187 4.187 5 C 0.345 3.655 6 O -0.443 6.443 7 N -0.349 5.349 8 C 0.003 3.997 9 H 0.103 0.897 10 C -0.188 4.188 11 C -0.132 4.132 12 H 0.113 0.887 13 C -0.011 4.011 14 N -0.133 5.133 15 C -0.179 4.179 16 C -0.214 4.214 17 N -0.266 5.266 18 C -0.111 4.111 19 C -0.154 4.154 20 C 0.113 3.887 21 O -0.303 6.303 22 C -0.160 4.160 23 C -0.185 4.185 24 O -0.363 6.363 25 Si 0.695 3.305 26 C -0.087 4.087 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.175 0.825 31 H 0.250 0.750 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.220 0.780 37 H 0.189 0.811 38 H 0.235 0.765 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.258 0.742 42 H 0.114 0.886 43 H 0.242 0.758 44 H -0.229 1.229 45 H -0.202 1.202 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.834 0.556 5.786 9.756 hybrid contribution 0.645 0.324 1.149 1.357 sum -7.189 0.881 6.935 10.028 Atomic orbital electron populations 1.20943 0.87713 1.04879 1.03902 1.20163 0.98293 0.91669 0.99190 1.21412 0.90868 0.99958 0.95871 1.20418 0.95160 0.92491 1.10588 1.18344 0.86914 0.84450 0.75787 1.90809 1.15039 1.87892 1.50563 1.45460 1.10556 1.04342 1.74569 1.21910 0.96981 0.82878 0.97927 0.89741 1.23561 0.98852 0.99547 0.96823 1.22908 0.98272 0.94832 0.97227 0.88698 1.22226 1.00749 0.97030 0.81066 1.45751 1.06695 1.52382 1.08481 1.23169 0.86413 1.09697 0.98622 1.22653 0.96433 1.09562 0.92802 1.70241 1.01309 1.21101 1.33941 1.25340 1.00439 1.05271 0.80007 1.23280 0.99911 0.96791 0.95426 1.18600 0.83489 0.91017 0.95643 1.84768 1.15584 1.96090 1.33900 1.20784 0.94948 0.95109 1.05201 1.25303 1.04199 0.99969 0.89010 1.86535 1.38614 1.94098 1.17036 0.93794 0.80956 0.72957 0.82786 1.21323 0.91727 0.99537 0.96136 0.89707 0.90049 0.89429 0.82516 0.74997 0.87792 0.93165 0.86552 0.87078 0.77957 0.81051 0.76530 0.88956 0.86361 0.74235 0.88622 0.75825 1.22895 1.20170 0.81806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.34 10.00 71.24 0.71 2.05 16 2 C -0.09 0.54 5.87 -19.90 -0.12 0.42 16 3 C -0.06 0.24 9.18 22.52 0.21 0.45 16 4 C -0.18 -0.66 5.89 -20.01 -0.12 -0.78 16 5 C 0.56 3.62 7.76 86.70 0.67 4.29 16 6 O -0.56 -8.68 14.76 16.94 0.25 -8.43 16 7 N -0.70 1.26 5.21 -443.20 -2.31 -1.05 16 8 C 0.11 -0.34 4.32 45.52 0.20 -0.14 16 9 H 0.08 0.17 7.46 -2.39 -0.02 0.15 16 10 C -0.15 0.65 7.43 31.12 0.23 0.89 16 11 C -0.11 1.09 3.84 -10.27 -0.04 1.05 16 12 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 13 C 0.11 -1.13 5.99 86.38 0.52 -0.61 16 14 N -0.45 1.17 2.75 -529.07 -1.46 -0.29 16 15 C -0.05 0.05 11.58 83.09 0.96 1.02 16 16 C -0.07 -0.36 11.87 83.52 0.99 0.63 16 17 N -0.55 -5.48 11.25 -200.30 -2.25 -7.73 16 18 C 0.17 0.51 12.56 180.26 2.26 2.78 16 19 C -0.12 1.26 7.39 31.12 0.23 1.49 16 20 C 0.16 1.02 6.69 22.84 0.15 1.18 16 21 O -0.49 -5.28 10.91 -68.75 -0.75 -6.03 16 22 C -0.16 -0.21 5.27 -19.80 -0.10 -0.31 16 23 C -0.08 -0.12 2.38 71.24 0.17 0.05 16 24 O -0.56 -2.48 12.88 -148.98 -1.92 -4.40 16 25 Si 0.79 -2.51 29.91 68.60 2.05 -0.46 16 26 C -0.07 0.31 8.30 22.30 0.19 0.50 16 27 H 0.08 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.08 -1.03 8.08 -2.39 -0.02 -1.05 16 29 H 0.09 -1.16 8.08 -2.39 -0.02 -1.18 16 30 H 0.16 -1.64 6.41 -2.91 -0.02 -1.66 16 31 H 0.41 -3.28 6.73 -92.71 -0.62 -3.90 16 32 H 0.10 -0.65 7.90 -2.38 -0.02 -0.67 16 33 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.12 -1.59 8.14 -2.39 -0.02 -1.61 16 35 H 0.11 -1.37 7.84 -2.39 -0.02 -1.39 16 36 H 0.20 -1.71 8.06 -2.91 -0.02 -1.73 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.22 -0.53 8.06 -2.91 -0.02 -0.56 16 39 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16 40 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 41 H 0.40 1.78 9.06 -74.06 -0.67 1.11 16 42 H 0.10 0.36 7.83 -2.38 -0.02 0.34 16 43 H 0.39 -1.69 8.70 -74.06 -0.64 -2.33 16 44 H -0.30 -1.53 7.11 99.48 0.71 -0.82 16 45 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 46 H 0.17 -1.76 5.10 -2.91 -0.01 -1.77 16 Total: 0.00 -34.02 384.38 -0.13 -34.15 By element: Atomic # 1 Polarization: -19.84 SS G_CDS: -0.86 Total: -20.70 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 7.11 Total: 14.95 kcal Atomic # 7 Polarization: -3.05 SS G_CDS: -6.02 Total: -9.07 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -2.42 Total: -18.87 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.05 Total: -0.46 kcal Total: -34.02 -0.13 -34.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.403 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds