Wall clock time and date at job start Sun Mar 7 2021 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47092 * 2 1 4 4 C 1.50697 * 109.47055 * 119.99939 * 2 1 3 5 5 C 1.32693 * 124.68605 * 65.29607 * 4 2 1 6 6 C 1.44508 * 113.10150 * 180.15815 * 5 4 2 7 7 C 1.47044 * 123.49224 * 179.80880 * 6 5 4 8 8 O 1.21663 * 119.99829 * 179.73160 * 7 6 5 9 9 N 1.34777 * 120.00116 * 359.45884 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27714 * 9 7 6 11 11 H 1.08998 * 112.84936 * 23.79679 * 10 9 7 12 12 C 1.53781 * 113.61288 * 154.99591 * 10 9 7 13 13 C 1.53781 * 87.07867 * 89.11536 * 12 10 9 14 14 H 1.09010 * 113.61500 * 270.88346 * 13 12 10 15 15 C 1.52997 * 113.61397 * 140.06578 * 13 12 10 16 16 N 1.46509 * 109.46974 * 174.99936 * 15 13 12 17 17 C 1.36875 * 126.39981 * 89.99996 * 16 15 13 18 18 C 1.34665 * 106.81822 * 179.97438 * 17 16 15 19 19 N 1.34122 * 108.02362 * 359.97438 * 18 17 16 20 20 C 1.30502 * 109.25167 * 359.72592 * 19 18 17 21 21 C 1.53779 * 87.08432 * 25.43214 * 13 12 10 22 22 C 1.36228 * 113.01266 * 359.54501 * 6 5 4 23 23 Cl 1.73595 * 124.60180 * 180.26712 * 22 6 5 24 24 S 1.70444 * 110.78983 * 0.24117 * 22 6 5 25 25 H 0.96699 * 113.99547 * 299.99931 * 1 2 3 26 26 H 1.09003 * 109.47105 * 239.99697 * 2 1 3 27 27 H 1.48504 * 109.99844 * 178.67872 * 3 2 1 28 28 H 1.48493 * 110.00049 * 299.99845 * 3 2 1 29 29 H 1.07999 * 123.45040 * 359.95453 * 5 4 2 30 30 H 0.96990 * 119.99728 * 0.26992 * 9 7 6 31 31 H 1.08999 * 113.61022 * 203.66276 * 12 10 9 32 32 H 1.08994 * 113.61312 * 334.48508 * 12 10 9 33 33 H 1.08998 * 109.47230 * 294.99784 * 15 13 12 34 34 H 1.08996 * 109.47606 * 54.99985 * 15 13 12 35 35 H 1.08009 * 126.58995 * 0.03349 * 17 16 15 36 36 H 1.08001 * 125.98489 * 180.02562 * 18 17 16 37 37 H 1.08005 * 125.65055 * 180.28968 * 20 19 18 38 38 H 1.09000 * 113.61513 * 220.01986 * 21 13 12 39 39 H 1.08999 * 113.61644 * 89.11386 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7531 -2.0008 1.4830 6 6 2.3362 -2.4188 2.7374 7 6 2.2699 -3.7979 3.2434 8 8 2.7879 -4.0810 4.3072 9 7 1.6307 -4.7470 2.5314 10 6 1.5595 -6.1196 3.0385 11 1 1.6708 -6.1771 4.1212 12 6 0.3579 -6.9138 2.4996 13 6 1.2622 -7.3362 1.3296 14 1 1.2339 -6.6475 0.4851 15 6 1.0811 -8.7968 0.9115 16 7 1.8920 -9.0683 -0.2781 17 6 3.1882 -9.5078 -0.2946 18 6 3.5434 -9.6250 -1.5883 19 7 2.4927 -9.2674 -2.3412 20 6 1.4979 -8.9385 -1.5632 21 6 2.4556 -7.1067 2.2719 22 6 2.9585 -1.4041 3.3999 23 17 3.7637 -1.5724 4.9286 24 16 2.8398 0.0530 2.5235 25 1 -0.3932 0.4417 0.7651 26 1 1.7924 -0.5139 -0.8900 27 1 3.5347 1.7703 0.0322 28 1 1.5616 2.4679 -1.2084 29 1 1.2235 -2.6695 0.8206 30 1 1.2177 -4.5212 1.6833 31 1 0.0589 -7.7424 3.1416 32 1 -0.4813 -6.2862 2.2000 33 1 1.3989 -9.4496 1.7245 34 1 0.0312 -8.9826 0.6856 35 1 3.8068 -9.7207 0.5648 36 1 4.5056 -9.9508 -1.9552 37 1 0.5220 -8.6135 -1.8926 38 1 3.3102 -6.6347 1.7872 39 1 2.7300 -7.9880 2.8517 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:00 Heat of formation + Delta-G solvation = 62.849453 kcal Electronic energy + Delta-G solvation = -25824.211324 eV Core-core repulsion = 21888.566461 eV Total energy + Delta-G solvation = -3935.644863 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94532 -41.46560 -39.88783 -38.76963 -37.98350 -36.97348 -35.37541 -33.82008 -31.67733 -30.42142 -28.92813 -26.94182 -26.73529 -26.07652 -23.89807 -22.35918 -22.23343 -21.79175 -20.91761 -20.32159 -19.45886 -18.37652 -17.94861 -17.76004 -17.08288 -16.53025 -16.38546 -16.22152 -15.92509 -15.73815 -15.47074 -15.02355 -14.93107 -14.82841 -14.61542 -14.45626 -14.32966 -14.16502 -14.08740 -13.71772 -13.44602 -12.94199 -12.74884 -12.62646 -12.40183 -12.34563 -12.18342 -11.90016 -11.70299 -11.35326 -11.01825 -10.91219 -10.60314 -10.47138 -10.19867 -9.92848 -9.67477 -9.44355 -5.16260 -0.66603 -0.22190 0.44808 0.67917 1.01148 1.16396 1.16581 1.56145 1.88641 1.93551 2.07897 2.11736 2.23534 3.25175 3.38655 3.48382 3.57268 3.70022 3.76419 3.82208 3.85852 3.89727 4.04803 4.17894 4.26730 4.32542 4.41776 4.52647 4.59079 4.68969 4.73825 4.76148 4.79592 4.83883 4.92561 4.98323 5.00905 5.14738 5.36160 5.54391 5.82686 6.33590 6.38938 6.68616 7.08862 7.16869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.020 4.020 3 Si 0.715 3.285 4 C -0.229 4.229 5 C -0.069 4.069 6 C -0.169 4.169 7 C 0.572 3.428 8 O -0.558 6.558 9 N -0.694 5.694 10 C 0.111 3.889 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.116 4.116 14 H 0.093 0.907 15 C 0.110 3.890 16 N -0.452 5.452 17 C -0.047 4.047 18 C -0.067 4.067 19 N -0.546 5.546 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.139 4.139 23 Cl 0.004 6.996 24 S 0.268 5.732 25 H 0.399 0.601 26 H 0.133 0.867 27 H -0.263 1.263 28 H -0.266 1.266 29 H 0.177 0.823 30 H 0.412 0.588 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.193 0.807 36 H 0.169 0.831 37 H 0.229 0.771 38 H 0.051 0.949 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 2.485 1.440 6.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.133 4.133 3 Si 0.617 3.383 4 C -0.346 4.346 5 C -0.098 4.098 6 C -0.189 4.189 7 C 0.359 3.641 8 O -0.437 6.437 9 N -0.345 5.345 10 C 0.005 3.995 11 H 0.106 0.894 12 C -0.155 4.155 13 C -0.135 4.135 14 H 0.111 0.889 15 C -0.011 4.011 16 N -0.133 5.133 17 C -0.181 4.181 18 C -0.214 4.214 19 N -0.265 5.265 20 C -0.108 4.108 21 C -0.184 4.184 22 C -0.285 4.285 23 Cl 0.033 6.967 24 S 0.534 5.466 25 H 0.249 0.751 26 H 0.150 0.850 27 H -0.189 1.189 28 H -0.191 1.191 29 H 0.194 0.806 30 H 0.250 0.750 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.246 0.754 38 H 0.070 0.930 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.533 4.063 0.907 6.155 hybrid contribution 0.075 -1.953 0.298 1.977 sum -4.458 2.110 1.205 5.078 Atomic orbital electron populations 1.86520 1.16059 1.81983 1.50485 1.24436 0.85584 1.08818 0.94468 0.94342 0.79745 0.75729 0.88438 1.24954 1.08247 0.98627 1.02790 1.21109 0.99097 0.95504 0.94091 1.20320 1.06550 0.94178 0.97825 1.17676 0.78152 0.84486 0.83818 1.90860 1.47091 1.82451 1.23326 1.45397 1.56119 1.08399 1.24630 1.21904 0.98419 0.80169 0.98965 0.89381 1.23279 0.95885 1.00195 0.96168 1.22923 0.97159 0.95835 0.97546 0.88863 1.22232 0.96749 0.96588 0.85512 1.45747 1.11265 1.48147 1.08177 1.23046 0.87191 1.07504 1.00338 1.22585 0.99514 1.08520 0.90802 1.70240 1.01523 1.19163 1.35589 1.25524 1.01169 1.04562 0.79520 1.23525 0.96949 0.99889 0.98077 1.25815 1.04542 1.02197 0.95980 1.98427 1.76278 1.97501 1.24493 1.83196 1.49774 1.04791 1.08880 0.75086 0.85006 1.18865 1.19059 0.80576 0.75036 0.86380 0.89051 0.87377 0.86273 0.78979 0.81383 0.75447 0.93023 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.43 12.88 -148.98 -1.92 1.51 16 2 C -0.02 0.13 2.94 71.23 0.21 0.34 16 3 Si 0.71 -4.13 30.92 68.60 2.12 -2.01 16 4 C -0.23 1.08 5.65 24.51 0.14 1.22 16 5 C -0.07 0.27 9.75 22.70 0.22 0.49 16 6 C -0.17 -0.37 5.98 -19.84 -0.12 -0.49 16 7 C 0.57 2.87 7.79 86.55 0.67 3.54 16 8 O -0.56 -7.13 14.51 -4.23 -0.06 -7.19 16 9 N -0.69 1.63 5.24 -443.64 -2.33 -0.69 16 10 C 0.11 -0.43 4.32 45.52 0.20 -0.23 16 11 H 0.09 0.07 7.46 -2.39 -0.02 0.06 16 12 C -0.12 1.27 7.39 31.12 0.23 1.50 16 13 C -0.12 1.10 3.84 -10.27 -0.04 1.06 16 14 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 15 C 0.11 -1.10 5.99 86.38 0.52 -0.58 16 16 N -0.45 1.04 2.75 -529.05 -1.46 -0.42 16 17 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 18 C -0.07 -0.44 11.87 83.52 0.99 0.55 16 19 N -0.55 -5.28 11.25 -200.31 -2.25 -7.53 16 20 C 0.17 0.29 12.56 180.26 2.26 2.56 16 21 C -0.15 0.74 7.43 31.12 0.23 0.97 16 22 C -0.14 -0.48 6.87 67.35 0.46 -0.02 16 23 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 24 S 0.27 -0.76 20.19 -56.49 -1.14 -1.90 16 25 H 0.40 -5.48 8.70 -74.06 -0.64 -6.12 16 26 H 0.13 -0.90 7.96 -2.39 -0.02 -0.92 16 27 H -0.26 0.26 7.11 99.48 0.71 0.96 16 28 H -0.27 -0.17 7.11 99.48 0.71 0.54 16 29 H 0.18 -1.54 7.10 -2.91 -0.02 -1.56 16 30 H 0.41 -3.15 7.24 -92.72 -0.67 -3.82 16 31 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 32 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.11 -1.29 7.85 -2.39 -0.02 -1.31 16 34 H 0.12 -1.63 8.14 -2.39 -0.02 -1.65 16 35 H 0.19 -0.88 8.06 -2.91 -0.02 -0.90 16 36 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.23 -1.30 8.06 -2.91 -0.02 -1.32 16 38 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.10 -0.69 7.90 -2.39 -0.02 -0.71 16 Total: 0.00 -25.71 362.18 -0.33 -26.04 By element: Atomic # 1 Polarization: -19.43 SS G_CDS: -0.16 Total: -19.59 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.94 Total: 11.83 kcal Atomic # 7 Polarization: -2.61 SS G_CDS: -6.03 Total: -8.64 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -1.98 Total: -5.68 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.12 Total: -2.01 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.14 Total: -1.90 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -25.71 -0.33 -26.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.889 kcal (2) G-P(sol) polarization free energy of solvation -25.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds