Wall clock time and date at job start Sun Mar 7 2021 04:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47013 * 119.99918 * 2 1 3 5 5 C 1.34184 * 125.43720 * 65.00047 * 4 2 1 6 6 C 1.47020 * 105.95357 * 179.97438 * 5 4 2 7 7 C 1.47375 * 127.18976 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00375 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99717 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99932 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84986 * 336.19159 * 10 9 7 12 12 C 1.53775 * 113.61559 * 107.50077 * 10 9 7 13 13 C 1.53779 * 87.08237 * 89.11422 * 12 10 9 14 14 H 1.08994 * 113.61871 * 270.88229 * 13 12 10 15 15 C 1.53001 * 113.68992 * 139.98922 * 13 12 10 16 16 N 1.46496 * 109.47096 * 87.47123 * 15 13 12 17 17 C 1.36881 * 126.39453 * 269.71386 * 16 15 13 18 18 C 1.34671 * 106.82016 * 179.84231 * 17 16 15 19 19 N 1.34128 * 108.01839 * 0.42033 * 18 17 16 20 20 C 1.30502 * 109.25608 * 359.73290 * 19 18 17 21 21 C 1.53785 * 87.08148 * 25.43618 * 13 12 10 22 22 C 1.36411 * 105.61474 * 359.97438 * 6 5 4 23 23 O 1.33658 * 108.40014 * 0.02562 * 22 6 5 24 24 H 0.96697 * 113.99979 * 300.00097 * 1 2 3 25 25 H 1.09003 * 109.47091 * 239.99650 * 2 1 3 26 26 H 1.48507 * 109.99829 * 299.99638 * 3 2 1 27 27 H 1.48493 * 110.00062 * 61.32045 * 3 2 1 28 28 H 1.07999 * 127.02209 * 359.70047 * 5 4 2 29 29 H 0.97000 * 120.00222 * 359.97438 * 9 7 6 30 30 H 1.09000 * 113.61823 * 203.66272 * 12 10 9 31 31 H 1.09004 * 113.61557 * 334.56944 * 12 10 9 32 32 H 1.09008 * 109.47215 * 207.46661 * 15 13 12 33 33 H 1.09000 * 109.47254 * 327.46615 * 15 13 12 34 34 H 1.07999 * 126.59273 * 359.97438 * 17 16 15 35 35 H 1.08002 * 125.99378 * 180.11928 * 18 17 16 36 36 H 1.07999 * 125.64932 * 180.02562 * 20 19 18 37 37 H 1.09000 * 113.61212 * 220.02563 * 21 13 12 38 38 H 1.08998 * 113.61712 * 89.11263 * 21 13 12 39 39 H 1.08001 * 125.80413 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7551 -2.0122 1.5037 6 6 2.4130 -2.2463 2.7975 7 6 2.5005 -3.5193 3.5349 8 8 1.9922 -4.5242 3.0760 9 7 3.1441 -3.5697 4.7181 10 6 3.2316 -4.8352 5.4509 11 1 2.4357 -5.5322 5.1886 12 6 4.6350 -5.4635 5.4297 13 6 4.9340 -4.6469 6.6980 14 1 5.3343 -3.6539 6.4937 15 6 5.7475 -5.4118 7.7440 16 7 7.1767 -5.2442 7.4694 17 6 7.9521 -6.0504 6.6805 18 6 9.1962 -5.5351 6.7005 19 7 9.1829 -4.4492 7.4878 20 6 7.9765 -4.2689 7.9518 21 6 3.4199 -4.6575 6.9669 22 6 2.9253 -1.0390 3.1726 23 8 2.6272 -0.1422 2.2275 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8900 26 1 1.5616 2.4679 -1.2086 27 1 1.5880 2.4585 1.2242 28 1 1.2324 -2.7386 0.8991 29 1 3.5499 -2.7683 5.0840 30 1 4.6336 -6.5410 5.5944 31 1 5.2333 -5.1668 4.5682 32 1 5.5203 -5.0228 8.7367 33 1 5.4909 -6.4703 7.7011 34 1 7.6281 -6.9295 6.1433 35 1 10.0552 -5.9299 6.1784 36 1 7.6688 -3.4715 8.6120 37 1 3.0372 -3.7100 7.3462 38 1 3.0863 -5.5146 7.5517 39 1 3.4780 -0.8414 4.0792 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:05 Heat of formation + Delta-G solvation = 50.000969 kcal Electronic energy + Delta-G solvation = -23814.558412 eV Core-core repulsion = 20114.085510 eV Total energy + Delta-G solvation = -3700.472902 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.79691 -42.97072 -41.31343 -39.42236 -38.19862 -35.47186 -34.32854 -33.60367 -31.81965 -30.40905 -28.98642 -27.02833 -26.81283 -25.46794 -23.96238 -22.36598 -22.22781 -21.86699 -21.24068 -20.53455 -19.45992 -18.47271 -17.92897 -17.61357 -17.50489 -17.13522 -16.63018 -16.32605 -16.01292 -15.94986 -15.67949 -15.11656 -15.02327 -14.84590 -14.61273 -14.24734 -14.21903 -13.98888 -13.97044 -13.72922 -13.64268 -13.02807 -13.00099 -12.58056 -12.12357 -11.92475 -11.62077 -11.16727 -10.97121 -10.85126 -10.81465 -10.51080 -10.24811 -9.89512 -9.41903 -5.04264 0.14285 0.82193 1.07054 1.14030 1.41658 1.65718 1.78267 1.85716 1.89867 2.23846 2.31837 3.07663 3.08921 3.18510 3.29329 3.42013 3.47892 3.53495 3.79081 3.81960 3.82742 3.92174 3.99964 4.19638 4.21419 4.30991 4.40069 4.41332 4.50841 4.55167 4.61150 4.67723 4.73593 4.77374 4.82822 4.87496 5.15102 5.31915 5.36801 5.75185 5.84340 6.17687 6.24867 6.29809 7.08969 7.19405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.036 4.036 3 Si 0.704 3.296 4 C -0.055 4.055 5 C -0.122 4.122 6 C -0.239 4.239 7 C 0.592 3.408 8 O -0.527 6.527 9 N -0.712 5.712 10 C 0.123 3.877 11 H 0.109 0.891 12 C -0.146 4.146 13 C -0.129 4.129 14 H 0.097 0.903 15 C 0.113 3.887 16 N -0.457 5.457 17 C -0.053 4.053 18 C -0.031 4.031 19 N -0.495 5.495 20 C 0.178 3.822 21 C -0.136 4.136 22 C 0.033 3.967 23 O -0.165 6.165 24 H 0.381 0.619 25 H 0.138 0.862 26 H -0.249 1.249 27 H -0.256 1.256 28 H 0.163 0.837 29 H 0.398 0.602 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 1.745 3.046 3.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.326 6.326 2 C -0.145 4.145 3 Si 0.603 3.397 4 C -0.104 4.104 5 C -0.142 4.142 6 C -0.243 4.243 7 C 0.380 3.620 8 O -0.404 6.404 9 N -0.363 5.363 10 C 0.017 3.983 11 H 0.127 0.873 12 C -0.184 4.184 13 C -0.148 4.148 14 H 0.115 0.885 15 C -0.009 4.009 16 N -0.140 5.140 17 C -0.186 4.186 18 C -0.179 4.179 19 N -0.213 5.213 20 C -0.104 4.104 21 C -0.175 4.175 22 C -0.037 4.037 23 O -0.061 6.061 24 H 0.229 0.771 25 H 0.156 0.844 26 H -0.173 1.173 27 H -0.180 1.180 28 H 0.180 0.820 29 H 0.233 0.767 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.219 0.781 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.181 2.316 2.337 3.296 hybrid contribution -1.481 -0.635 0.736 1.771 sum -1.662 1.681 3.073 3.877 Atomic orbital electron populations 1.86684 1.16617 1.80128 1.49216 1.24410 0.84048 1.12322 0.93715 0.94426 0.91292 0.72972 0.80991 1.22695 1.01654 0.93363 0.92656 1.22548 1.01028 0.95349 0.95248 1.21485 1.09332 0.94207 0.99286 1.17255 0.77519 0.87146 0.80106 1.90826 1.46375 1.35716 1.67451 1.45478 1.57567 1.11813 1.21486 1.21781 0.98705 0.86320 0.91461 0.87325 1.23520 0.96904 1.00185 0.97813 1.23065 0.95263 1.00351 0.96129 0.88458 1.21960 0.76842 1.02369 0.99764 1.45576 1.09387 1.22408 1.36671 1.22743 0.92595 1.00575 1.02692 1.22355 0.96941 0.95654 1.02925 1.70316 1.19985 1.17960 1.13043 1.25015 0.86304 0.95821 1.03299 1.23348 0.94312 1.04004 0.95808 1.24454 0.99358 0.86717 0.93219 1.83700 1.57130 1.38856 1.26408 0.77113 0.84411 1.17284 1.17986 0.81977 0.76732 0.88708 0.90642 0.88518 0.88665 0.81075 0.81417 0.78112 0.90131 0.87954 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.16 12.88 -35.23 -0.45 -0.62 16 2 C -0.04 0.04 2.97 36.01 0.11 0.15 16 3 Si 0.70 -1.20 32.09 -169.99 -5.46 -6.66 16 4 C -0.06 0.00 6.18 -35.74 -0.22 -0.22 16 5 C -0.12 -0.18 10.90 -37.45 -0.41 -0.59 16 6 C -0.24 -0.15 6.31 -103.28 -0.65 -0.80 16 7 C 0.59 1.07 7.81 -12.54 -0.10 0.97 16 8 O -0.53 -3.24 16.58 5.27 0.09 -3.15 16 9 N -0.71 1.38 5.25 -54.11 -0.28 1.09 16 10 C 0.12 -0.28 4.32 -67.12 -0.29 -0.57 16 11 H 0.11 -0.03 7.46 -51.93 -0.39 -0.42 16 12 C -0.15 0.42 7.43 -25.92 -0.19 0.23 16 13 C -0.13 0.59 3.84 -89.81 -0.34 0.24 16 14 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 15 C 0.11 -0.49 5.99 -4.04 -0.02 -0.51 16 16 N -0.46 0.50 2.75 -118.58 -0.33 0.17 16 17 C -0.05 0.00 11.58 -16.56 -0.19 -0.19 16 18 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 19 N -0.50 -1.94 11.25 -14.66 -0.16 -2.10 16 20 C 0.18 0.10 12.56 -90.37 -1.14 -1.03 16 21 C -0.14 0.68 7.39 -25.91 -0.19 0.49 16 22 C 0.03 -0.07 11.61 30.07 0.35 0.27 16 23 O -0.17 0.13 8.90 7.66 0.07 0.20 16 24 H 0.38 -0.98 8.70 45.56 0.40 -0.58 16 25 H 0.14 -0.32 7.96 -51.93 -0.41 -0.73 16 26 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 27 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 28 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 29 H 0.40 -1.94 7.67 -40.82 -0.31 -2.25 16 30 H 0.09 -0.33 7.90 -51.93 -0.41 -0.74 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.10 -0.55 8.14 -51.92 -0.42 -0.97 16 33 H 0.10 -0.48 7.85 -51.93 -0.41 -0.88 16 34 H 0.17 -0.40 8.06 -52.49 -0.42 -0.82 16 35 H 0.17 0.11 8.06 -52.49 -0.42 -0.32 16 36 H 0.20 -0.55 8.06 -52.49 -0.42 -0.97 16 37 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 38 H 0.10 -0.59 8.10 -51.93 -0.42 -1.01 16 39 H 0.21 -1.44 7.47 -52.49 -0.39 -1.83 16 LS Contribution 342.62 15.07 5.16 5.16 Total: 0.00 -11.39 342.62 -9.80 -21.19 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -4.93 Total: -13.45 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.50 Total: -1.85 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.78 Total: -0.84 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.30 Total: -3.56 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.46 Total: -6.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -11.39 -9.80 -21.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.193 kcal (2) G-P(sol) polarization free energy of solvation -11.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds