Wall clock time and date at job start Sun Mar 7 2021 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47013 * 119.99918 * 2 1 3 5 5 C 1.34184 * 125.43720 * 65.00047 * 4 2 1 6 6 C 1.47020 * 105.95357 * 179.97438 * 5 4 2 7 7 C 1.47375 * 127.18976 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00375 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99717 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99932 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.84986 * 336.19159 * 10 9 7 12 12 C 1.53775 * 113.61559 * 107.50077 * 10 9 7 13 13 C 1.53779 * 87.08237 * 89.11422 * 12 10 9 14 14 H 1.08994 * 113.61871 * 270.88229 * 13 12 10 15 15 C 1.53001 * 113.68992 * 139.98922 * 13 12 10 16 16 N 1.46496 * 109.47096 * 87.47123 * 15 13 12 17 17 C 1.36881 * 126.39453 * 269.71386 * 16 15 13 18 18 C 1.34671 * 106.82016 * 179.84231 * 17 16 15 19 19 N 1.34128 * 108.01839 * 0.42033 * 18 17 16 20 20 C 1.30502 * 109.25608 * 359.73290 * 19 18 17 21 21 C 1.53785 * 87.08148 * 25.43618 * 13 12 10 22 22 C 1.36411 * 105.61474 * 359.97438 * 6 5 4 23 23 O 1.33658 * 108.40014 * 0.02562 * 22 6 5 24 24 H 0.96697 * 113.99979 * 300.00097 * 1 2 3 25 25 H 1.09003 * 109.47091 * 239.99650 * 2 1 3 26 26 H 1.48507 * 109.99829 * 299.99638 * 3 2 1 27 27 H 1.48493 * 110.00062 * 61.32045 * 3 2 1 28 28 H 1.07999 * 127.02209 * 359.70047 * 5 4 2 29 29 H 0.97000 * 120.00222 * 359.97438 * 9 7 6 30 30 H 1.09000 * 113.61823 * 203.66272 * 12 10 9 31 31 H 1.09004 * 113.61557 * 334.56944 * 12 10 9 32 32 H 1.09008 * 109.47215 * 207.46661 * 15 13 12 33 33 H 1.09000 * 109.47254 * 327.46615 * 15 13 12 34 34 H 1.07999 * 126.59273 * 359.97438 * 17 16 15 35 35 H 1.08002 * 125.99378 * 180.11928 * 18 17 16 36 36 H 1.07999 * 125.64932 * 180.02562 * 20 19 18 37 37 H 1.09000 * 113.61212 * 220.02563 * 21 13 12 38 38 H 1.08998 * 113.61712 * 89.11263 * 21 13 12 39 39 H 1.08001 * 125.80413 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7551 -2.0122 1.5037 6 6 2.4130 -2.2463 2.7975 7 6 2.5005 -3.5193 3.5349 8 8 1.9922 -4.5242 3.0760 9 7 3.1441 -3.5697 4.7181 10 6 3.2316 -4.8352 5.4509 11 1 2.4357 -5.5322 5.1886 12 6 4.6350 -5.4635 5.4297 13 6 4.9340 -4.6469 6.6980 14 1 5.3343 -3.6539 6.4937 15 6 5.7475 -5.4118 7.7440 16 7 7.1767 -5.2442 7.4694 17 6 7.9521 -6.0504 6.6805 18 6 9.1962 -5.5351 6.7005 19 7 9.1829 -4.4492 7.4878 20 6 7.9765 -4.2689 7.9518 21 6 3.4199 -4.6575 6.9669 22 6 2.9253 -1.0390 3.1726 23 8 2.6272 -0.1422 2.2275 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8900 26 1 1.5616 2.4679 -1.2086 27 1 1.5880 2.4585 1.2242 28 1 1.2324 -2.7386 0.8991 29 1 3.5499 -2.7683 5.0840 30 1 4.6336 -6.5410 5.5944 31 1 5.2333 -5.1668 4.5682 32 1 5.5203 -5.0228 8.7367 33 1 5.4909 -6.4703 7.7011 34 1 7.6281 -6.9295 6.1433 35 1 10.0552 -5.9299 6.1784 36 1 7.6688 -3.4715 8.6120 37 1 3.0372 -3.7100 7.3462 38 1 3.0863 -5.5146 7.5517 39 1 3.4780 -0.8414 4.0792 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:04 Heat of formation + Delta-G solvation = 48.483974 kcal Electronic energy + Delta-G solvation = -23814.624194 eV Core-core repulsion = 20114.085510 eV Total energy + Delta-G solvation = -3700.538684 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.75595 -42.91729 -41.22109 -39.40104 -38.17475 -35.42225 -34.32893 -33.55826 -31.76825 -30.38865 -28.81680 -26.77048 -26.71192 -25.39714 -23.80684 -22.36897 -22.21965 -21.77921 -21.17238 -20.35952 -19.38938 -18.33785 -17.86694 -17.57025 -17.49659 -16.98256 -16.48880 -16.25902 -16.01307 -15.78560 -15.66805 -15.03814 -14.95271 -14.82005 -14.52309 -14.25443 -14.17351 -14.00182 -13.78474 -13.57553 -13.44846 -12.97080 -12.75882 -12.33628 -12.15592 -11.71626 -11.35454 -11.30470 -11.01355 -10.88735 -10.78731 -10.45075 -10.18895 -9.82855 -9.41763 -4.92481 0.21858 0.78066 1.16318 1.19164 1.51035 1.73524 1.93407 1.95615 1.98656 2.18732 2.26383 3.19593 3.38681 3.44689 3.48495 3.51856 3.71539 3.80108 3.92702 3.93386 4.06793 4.20046 4.27586 4.30168 4.40834 4.47773 4.53825 4.61829 4.70789 4.76393 4.81411 4.83539 4.86575 4.98890 5.01281 5.09744 5.14555 5.38298 5.53384 5.79698 5.85188 6.33027 6.36434 6.40977 7.09409 7.19719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.046 4.046 3 Si 0.790 3.210 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.270 4.270 7 C 0.588 3.412 8 O -0.585 6.585 9 N -0.693 5.693 10 C 0.108 3.892 11 H 0.083 0.917 12 C -0.147 4.147 13 C -0.114 4.114 14 H 0.099 0.901 15 C 0.110 3.890 16 N -0.452 5.452 17 C -0.048 4.048 18 C -0.067 4.067 19 N -0.546 5.546 20 C 0.176 3.824 21 C -0.116 4.116 22 C 0.067 3.933 23 O -0.165 6.165 24 H 0.391 0.609 25 H 0.148 0.852 26 H -0.288 1.288 27 H -0.284 1.284 28 H 0.144 0.856 29 H 0.415 0.585 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.192 0.808 35 H 0.168 0.832 36 H 0.231 0.769 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 2.734 4.969 5.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.154 4.154 3 Si 0.693 3.307 4 C -0.098 4.098 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.378 3.622 8 O -0.466 6.466 9 N -0.345 5.345 10 C 0.002 3.998 11 H 0.101 0.899 12 C -0.185 4.185 13 C -0.133 4.133 14 H 0.117 0.883 15 C -0.011 4.011 16 N -0.134 5.134 17 C -0.181 4.181 18 C -0.214 4.214 19 N -0.265 5.265 20 C -0.107 4.107 21 C -0.155 4.155 22 C -0.004 4.004 23 O -0.060 6.060 24 H 0.241 0.759 25 H 0.165 0.835 26 H -0.215 1.215 27 H -0.210 1.210 28 H 0.162 0.838 29 H 0.253 0.747 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.209 0.791 35 H 0.186 0.814 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 0.025 3.308 4.301 5.426 hybrid contribution -1.581 -0.943 0.143 1.847 sum -1.556 2.364 4.444 5.269 Atomic orbital electron populations 1.86652 1.17504 1.80579 1.50057 1.24718 0.83504 1.13347 0.93814 0.93435 0.89905 0.70268 0.77118 1.22700 1.01380 0.92745 0.92960 1.22574 1.02242 0.95965 0.96296 1.21471 1.11441 0.94992 0.99537 1.17510 0.77100 0.86848 0.80770 1.90789 1.49183 1.37606 1.69057 1.45334 1.56162 1.12780 1.20196 1.21917 0.98296 0.85911 0.93637 0.89922 1.23530 0.96008 1.00874 0.98120 1.22933 0.95574 0.99906 0.94867 0.88280 1.22227 0.74766 1.03329 1.00814 1.45741 1.10437 1.21505 1.35685 1.23037 0.92076 1.00842 1.02188 1.22583 0.98275 0.96385 1.04123 1.70244 1.22259 1.19298 1.14705 1.25541 0.85741 0.96410 1.02966 1.23284 0.93557 1.05340 0.93306 1.25289 0.96811 0.85021 0.93273 1.83727 1.56854 1.38998 1.26449 0.75924 0.83493 1.21496 1.21023 0.83802 0.74718 0.88147 0.92756 0.86229 0.87584 0.79078 0.81421 0.75323 0.88748 0.86595 0.72261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.83 12.88 -148.98 -1.92 -2.74 16 2 C -0.05 0.08 2.97 71.24 0.21 0.29 16 3 Si 0.79 -2.82 32.09 68.60 2.20 -0.62 16 4 C -0.05 -0.01 6.18 24.76 0.15 0.14 16 5 C -0.15 -0.71 10.90 23.65 0.26 -0.45 16 6 C -0.27 -0.47 6.31 -18.99 -0.12 -0.59 16 7 C 0.59 2.87 7.81 86.65 0.68 3.55 16 8 O -0.59 -8.93 16.58 -4.05 -0.07 -9.00 16 9 N -0.69 2.90 5.25 -443.35 -2.33 0.57 16 10 C 0.11 -0.51 4.32 45.52 0.20 -0.31 16 11 H 0.08 0.08 7.46 -2.39 -0.02 0.07 16 12 C -0.15 0.91 7.43 31.12 0.23 1.14 16 13 C -0.11 1.28 3.84 -10.27 -0.04 1.24 16 14 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 15 C 0.11 -1.24 5.99 86.38 0.52 -0.72 16 16 N -0.45 1.65 2.75 -529.06 -1.46 0.20 16 17 C -0.05 0.01 11.58 83.09 0.96 0.98 16 18 C -0.07 -0.37 11.87 83.52 0.99 0.63 16 19 N -0.55 -4.55 11.25 -200.31 -2.25 -6.80 16 20 C 0.18 0.02 12.56 180.26 2.26 2.29 16 21 C -0.12 1.43 7.39 31.12 0.23 1.66 16 22 C 0.07 -0.42 11.61 67.39 0.78 0.37 16 23 O -0.16 0.47 8.90 4.48 0.04 0.51 16 24 H 0.39 -1.70 8.70 -74.06 -0.64 -2.35 16 25 H 0.15 -0.60 7.96 -2.39 -0.02 -0.62 16 26 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 27 H -0.28 -0.33 7.11 99.48 0.71 0.38 16 28 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 29 H 0.42 -4.86 7.67 -92.71 -0.71 -5.57 16 30 H 0.10 -0.74 7.90 -2.39 -0.02 -0.76 16 31 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 32 H 0.12 -1.80 8.14 -2.38 -0.02 -1.82 16 33 H 0.11 -1.35 7.85 -2.39 -0.02 -1.37 16 34 H 0.19 -1.04 8.06 -2.91 -0.02 -1.07 16 35 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.23 -1.71 8.06 -2.91 -0.02 -1.74 16 37 H 0.09 -1.33 8.14 -2.39 -0.02 -1.35 16 38 H 0.12 -1.65 8.10 -2.39 -0.02 -1.67 16 39 H 0.26 -4.57 7.47 -2.91 -0.02 -4.59 16 Total: 0.00 -31.20 342.62 1.30 -29.89 By element: Atomic # 1 Polarization: -21.98 SS G_CDS: -0.23 Total: -22.21 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 7.32 Total: 10.20 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -6.04 Total: -6.03 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.95 Total: -11.23 kcal Atomic # 14 Polarization: -2.82 SS G_CDS: 2.20 Total: -0.62 kcal Total: -31.20 1.30 -29.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.377 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds