Wall clock time and date at job start Sun Mar 7 2021 04:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46955 * 2 1 4 4 C 1.50694 * 109.47495 * 239.99629 * 2 1 3 5 5 C 1.34848 * 125.89081 * 120.03988 * 4 2 1 6 6 C 1.40889 * 107.41937 * 179.73330 * 5 4 2 7 7 C 1.34847 * 107.41625 * 0.38444 * 6 5 4 8 8 C 1.50701 * 125.89382 * 179.88570 * 7 6 5 9 9 C 1.50703 * 109.47262 * 274.68655 * 8 7 6 10 10 O 1.21286 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.85074 * 336.20143 * 12 11 9 14 14 C 1.53782 * 113.61142 * 107.50467 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.18830 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.46494 * 109.47391 * 87.55384 * 17 15 14 19 19 C 1.36883 * 126.39433 * 269.71595 * 18 17 15 20 20 C 1.34674 * 106.81550 * 179.83671 * 19 18 17 21 21 N 1.34129 * 108.01880 * 0.42221 * 20 19 18 22 22 C 1.30495 * 109.25683 * 359.73125 * 21 20 19 23 23 C 1.53781 * 113.61619 * 205.00312 * 12 11 9 24 24 N 1.36340 * 125.89385 * 300.00074 * 4 2 1 25 25 H 0.96703 * 113.99870 * 60.00745 * 1 2 3 26 26 H 1.09003 * 109.46810 * 119.99639 * 2 1 3 27 27 H 1.48495 * 110.00111 * 59.99622 * 3 2 1 28 28 H 1.48500 * 110.00152 * 181.31703 * 3 2 1 29 29 H 1.08007 * 126.29141 * 359.97438 * 5 4 2 30 30 H 1.08005 * 126.29708 * 180.23488 * 6 5 4 31 31 H 1.08999 * 109.47362 * 154.68464 * 8 7 6 32 32 H 1.09003 * 109.47088 * 34.68486 * 8 7 6 33 33 H 0.97001 * 120.00013 * 0.02562 * 11 9 8 34 34 H 1.08997 * 113.61668 * 203.66381 * 14 12 11 35 35 H 1.08998 * 113.61674 * 334.48890 * 14 12 11 36 36 H 1.09002 * 109.47053 * 207.55709 * 17 15 14 37 37 H 1.09004 * 109.47121 * 327.55345 * 17 15 14 38 38 H 1.07994 * 126.59513 * 359.97438 * 19 18 17 39 39 H 1.08001 * 125.99071 * 180.18358 * 20 19 18 40 40 H 1.07997 * 125.64719 * 180.02562 * 22 21 20 41 41 H 1.09002 * 113.61445 * 25.43587 * 23 12 11 42 42 H 1.09002 * 113.61408 * 156.25317 * 23 12 11 43 43 H 0.97006 * 125.63537 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 2.7105 -0.1730 -2.1908 6 6 2.9505 -1.1767 -3.1500 7 6 2.3018 -2.2868 -2.7435 8 6 2.2769 -3.6097 -3.4649 9 6 1.1848 -3.5952 -4.5032 10 8 0.4949 -2.6076 -4.6438 11 7 0.9754 -4.6792 -5.2761 12 6 -0.0867 -4.6653 -6.2851 13 1 -0.8752 -3.9471 -6.0598 14 6 0.4361 -4.5762 -7.7286 15 6 0.4821 -6.1152 -7.7241 16 1 1.4280 -6.5227 -7.3676 17 6 0.0190 -6.7472 -9.0382 18 7 1.1566 -6.8579 -9.9545 19 6 1.5579 -5.9208 -10.8680 20 6 2.6394 -6.4241 -11.4931 21 7 2.8859 -7.6395 -10.9819 22 6 2.0017 -7.9059 -10.0598 23 6 -0.6127 -6.0647 -6.6453 24 7 1.6772 -2.0077 -1.5641 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8901 27 1 1.5613 2.4679 1.2084 28 1 3.5345 1.7704 -0.0321 29 1 3.0853 0.8396 -2.2177 30 1 3.5429 -1.0750 -4.0473 31 1 2.0877 -4.4101 -2.7496 32 1 3.2382 -3.7765 -3.9510 33 1 1.5274 -5.4688 -5.1639 34 1 -0.2886 -4.1645 -8.4309 35 1 1.4171 -4.1081 -7.8096 36 1 -0.3867 -7.7395 -8.8410 37 1 -0.7519 -6.1228 -9.4899 38 1 1.0974 -4.9612 -11.0506 39 1 3.2063 -5.9365 -12.2723 40 1 1.9541 -8.8140 -9.4772 41 1 -0.4777 -6.7995 -5.8516 42 1 -1.6247 -6.0600 -7.0501 43 1 1.1407 -2.6294 -1.0477 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:11 Heat of formation + Delta-G solvation = 70.365303 kcal Electronic energy + Delta-G solvation = -25416.390601 eV Core-core repulsion = 21658.981806 eV Total energy + Delta-G solvation = -3757.408795 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.92881 -42.35767 -41.14108 -39.40496 -37.70845 -35.33712 -33.98720 -32.88883 -31.94318 -30.41140 -29.60576 -28.52236 -26.70971 -25.38380 -24.09259 -22.30859 -22.16059 -21.78590 -21.37559 -21.03526 -20.28711 -18.94825 -18.49998 -18.02519 -17.28992 -16.77057 -16.53733 -16.29627 -16.22301 -15.79973 -15.29603 -15.14436 -14.92553 -14.85243 -14.71461 -14.54574 -14.22745 -14.16050 -14.09484 -13.95645 -13.81944 -13.47988 -13.40017 -12.83990 -12.66598 -12.32214 -12.09416 -12.00770 -11.68694 -11.32934 -11.01716 -10.89809 -10.66030 -10.45274 -10.07199 -9.81970 -9.42778 -8.98034 -4.94245 1.08052 1.18051 1.28667 1.58014 1.66703 1.85933 1.90990 1.95040 2.25083 2.27159 2.48733 3.40349 3.48649 3.50690 3.65040 3.71570 3.78804 3.81508 3.91321 4.00455 4.06084 4.17839 4.19382 4.28575 4.37257 4.46621 4.53680 4.58143 4.61071 4.71936 4.76319 4.77237 4.81250 4.86251 5.00448 5.02531 5.18392 5.23419 5.26476 5.37699 5.59808 5.84385 5.97267 6.11008 6.34973 6.49169 6.63038 6.65746 7.18486 7.23566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.053 4.053 3 Si 0.800 3.200 4 C -0.020 4.020 5 C -0.203 4.203 6 C -0.202 4.202 7 C 0.033 3.967 8 C -0.068 4.068 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.111 3.889 13 H 0.081 0.919 14 C -0.146 4.146 15 C -0.114 4.114 16 H 0.096 0.904 17 C 0.110 3.890 18 N -0.452 5.452 19 C -0.047 4.047 20 C -0.067 4.067 21 N -0.546 5.546 22 C 0.174 3.826 23 C -0.119 4.119 24 N -0.536 5.536 25 H 0.395 0.605 26 H 0.108 0.892 27 H -0.293 1.293 28 H -0.285 1.285 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.416 0.584 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.193 0.807 39 H 0.169 0.831 40 H 0.229 0.771 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -3.459 0.604 4.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.163 4.163 3 Si 0.704 3.296 4 C -0.133 4.133 5 C -0.228 4.228 6 C -0.226 4.226 7 C -0.081 4.081 8 C -0.108 4.108 9 C 0.300 3.700 10 O -0.451 6.451 11 N -0.355 5.355 12 C 0.005 3.995 13 H 0.099 0.901 14 C -0.185 4.185 15 C -0.133 4.133 16 H 0.114 0.886 17 C -0.011 4.011 18 N -0.133 5.133 19 C -0.181 4.181 20 C -0.214 4.214 21 N -0.265 5.265 22 C -0.108 4.108 23 C -0.157 4.157 24 N -0.131 5.131 25 H 0.245 0.755 26 H 0.125 0.875 27 H -0.220 1.220 28 H -0.211 1.211 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.253 0.747 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.210 0.790 39 H 0.187 0.813 40 H 0.245 0.755 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.782 -3.093 1.416 4.394 hybrid contribution -0.290 -0.512 0.457 0.745 sum -3.072 -3.605 1.872 5.093 Atomic orbital electron populations 1.86427 1.17565 1.82242 1.50537 1.24963 0.84892 1.11337 0.95072 0.92916 0.77807 0.74532 0.84367 1.20984 1.06102 0.85799 1.00426 1.20907 1.04997 1.00588 0.96271 1.20845 1.06786 0.93214 1.01768 1.19887 1.01282 0.97462 0.89480 1.20241 0.99929 0.94110 0.96520 1.20967 0.84653 0.82431 0.81902 1.90752 1.49553 1.34367 1.70384 1.45573 1.36256 1.17185 1.36499 1.21823 0.90333 0.99568 0.87753 0.90067 1.23541 1.01777 0.96179 0.96990 1.22944 1.00257 0.95453 0.94680 0.88580 1.22225 0.85959 1.05001 0.87958 1.45740 1.24620 1.14235 1.28744 1.23047 1.00752 0.97932 0.96320 1.22597 1.00075 0.93716 1.05004 1.70240 1.26857 1.17041 1.12337 1.25520 0.89674 0.95399 1.00228 1.23269 0.99492 0.95075 0.97887 1.41871 1.40859 1.11056 1.19363 0.75511 0.87474 1.22010 1.21135 0.83145 0.84327 0.85385 0.84298 0.74696 0.88416 0.92727 0.86414 0.87558 0.78977 0.81341 0.75460 0.89065 0.86890 0.74358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.22 12.88 -148.98 -1.92 -3.14 16 2 C -0.05 -0.07 3.08 71.23 0.22 0.15 16 3 Si 0.80 -0.30 30.58 68.60 2.10 1.80 16 4 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 5 C -0.20 -0.94 9.37 22.14 0.21 -0.73 16 6 C -0.20 -1.05 10.76 22.14 0.24 -0.81 16 7 C 0.03 0.08 5.66 41.08 0.23 0.31 16 8 C -0.07 0.34 6.24 29.10 0.18 0.52 16 9 C 0.51 0.03 7.82 87.66 0.69 0.72 16 10 O -0.57 -6.00 15.63 -3.05 -0.05 -6.05 16 11 N -0.70 4.32 5.26 -440.03 -2.32 2.00 16 12 C 0.11 -0.61 4.32 45.52 0.20 -0.41 16 13 H 0.08 0.01 7.47 -2.38 -0.02 -0.01 16 14 C -0.15 0.93 7.44 31.18 0.23 1.16 16 15 C -0.11 1.22 3.85 -10.20 -0.04 1.18 16 16 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 17 C 0.11 -1.17 5.99 86.38 0.52 -0.65 16 18 N -0.45 1.39 2.75 -529.08 -1.46 -0.07 16 19 C -0.05 0.00 11.58 83.09 0.96 0.96 16 20 C -0.07 -0.39 11.87 83.52 0.99 0.60 16 21 N -0.55 -4.85 11.25 -200.31 -2.25 -7.10 16 22 C 0.17 0.16 12.56 180.26 2.26 2.42 16 23 C -0.12 1.42 7.38 31.12 0.23 1.65 16 24 N -0.54 -1.22 6.07 -171.13 -1.04 -2.26 16 25 H 0.39 -1.60 8.70 -74.06 -0.64 -2.24 16 26 H 0.11 0.15 7.96 -2.39 -0.02 0.13 16 27 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 28 H -0.28 -1.31 7.11 99.48 0.71 -0.60 16 29 H 0.15 0.19 6.22 -2.91 -0.02 0.17 16 30 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 32 H 0.14 -1.30 8.14 -2.39 -0.02 -1.32 16 33 H 0.42 -5.05 8.70 -92.71 -0.81 -5.85 16 34 H 0.10 -0.71 7.90 -2.39 -0.02 -0.73 16 35 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 37 H 0.11 -1.30 7.85 -2.38 -0.02 -1.32 16 38 H 0.19 -1.03 8.06 -2.91 -0.02 -1.05 16 39 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.23 -1.48 8.06 -2.91 -0.02 -1.50 16 41 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 42 H 0.11 -1.56 8.10 -2.39 -0.02 -1.58 16 43 H 0.42 -0.50 8.96 -92.70 -0.83 -1.33 16 Total: 0.00 -29.44 366.03 -0.74 -30.18 By element: Atomic # 1 Polarization: -21.44 SS G_CDS: -1.19 Total: -22.63 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 7.39 Total: 7.27 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -7.06 Total: -7.43 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.97 Total: -9.19 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.10 Total: 1.80 kcal Total: -29.44 -0.74 -30.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.546 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds