Wall clock time and date at job start Sun Mar 7 2021 04:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47043 * 2 1 4 4 C 1.50697 * 109.47199 * 120.00046 * 2 1 3 5 5 C 1.31117 * 118.54362 * 250.00059 * 4 2 1 6 6 N 1.38936 * 121.84356 * 180.38368 * 5 4 2 7 7 C 1.47029 * 118.88229 * 346.68070 * 6 5 4 8 8 C 1.50703 * 109.81608 * 163.20388 * 7 6 5 9 9 O 1.21280 * 120.00323 * 340.86709 * 8 7 6 10 10 N 1.34778 * 119.99817 * 160.86340 * 8 7 6 11 11 C 1.46499 * 119.99940 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.91032 * 23.75105 * 11 10 8 13 13 C 1.53784 * 113.61434 * 155.00095 * 11 10 8 14 14 C 1.53787 * 87.07923 * 89.11404 * 13 11 10 15 15 H 1.08998 * 113.61447 * 270.79825 * 14 13 11 16 16 C 1.53000 * 113.60890 * 139.98364 * 14 13 11 17 17 N 1.46508 * 109.46810 * 175.00176 * 16 14 13 18 18 C 1.36882 * 126.39812 * 89.99648 * 17 16 14 19 19 C 1.34671 * 106.81449 * 179.97438 * 18 17 16 20 20 N 1.34123 * 108.02128 * 0.02562 * 19 18 17 21 21 C 1.30495 * 109.25761 * 359.72183 * 20 19 18 22 22 C 1.53779 * 113.61357 * 252.49697 * 11 10 8 23 23 C 1.53543 * 107.71183 * 43.63826 * 7 6 5 24 24 C 1.50210 * 118.54892 * 69.97967 * 4 2 1 25 25 H 0.96699 * 113.99895 * 59.99909 * 1 2 3 26 26 H 1.09007 * 109.47308 * 239.99933 * 2 1 3 27 27 H 1.48504 * 109.99949 * 298.67907 * 3 2 1 28 28 H 1.48499 * 110.00251 * 59.99915 * 3 2 1 29 29 H 1.07996 * 119.08158 * 0.40198 * 5 4 2 30 30 H 0.96997 * 120.55305 * 166.70627 * 6 5 4 31 31 H 1.08994 * 109.82081 * 284.06463 * 7 6 5 32 32 H 0.97000 * 119.99785 * 0.02562 * 10 8 7 33 33 H 1.09004 * 113.61451 * 334.56890 * 13 11 10 34 34 H 1.08994 * 113.61477 * 203.66192 * 13 11 10 35 35 H 1.09003 * 109.47303 * 294.99508 * 16 14 13 36 36 H 1.08993 * 109.47406 * 54.99787 * 16 14 13 37 37 H 1.07997 * 126.58829 * 359.96537 * 18 17 16 38 38 H 1.07998 * 125.98475 * 179.97438 * 19 18 17 39 39 H 1.08005 * 125.65164 * 180.29181 * 21 20 19 40 40 H 1.09006 * 113.61307 * 156.33848 * 22 11 10 41 41 H 1.09007 * 113.61642 * 25.43606 * 22 11 10 42 42 H 1.09005 * 109.62116 * 58.79804 * 23 7 6 43 43 H 1.08999 * 109.62070 * 179.35512 * 23 7 6 44 44 H 1.09002 * 109.32466 * 280.23118 * 24 4 2 45 45 H 1.08994 * 109.32678 * 39.88039 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.5116 -0.0028 2.1694 6 7 3.0067 -0.5881 3.3281 7 6 2.6220 -1.9712 3.6454 8 6 3.5612 -2.5386 4.6784 9 8 4.6442 -2.0241 4.8610 10 7 3.1976 -3.6177 5.3993 11 6 4.1104 -4.1689 6.4039 12 1 4.8293 -3.4366 6.7714 13 6 3.3979 -4.9476 7.5224 14 6 3.5365 -6.1954 6.6342 15 1 2.6998 -6.3400 5.9508 16 6 3.8952 -7.4637 7.4112 17 7 3.8870 -8.6122 6.5016 18 6 4.9491 -9.0821 5.7771 19 6 4.5052 -10.1455 5.0800 20 7 3.2074 -10.3197 5.3705 21 6 2.8317 -9.4083 6.2256 22 6 4.7494 -5.5047 5.9887 23 6 2.7157 -2.7909 2.3504 24 6 1.7447 -2.1977 1.3271 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 -0.8900 27 1 1.5878 2.4585 -1.2243 28 1 1.5614 2.4679 1.2085 29 1 2.6070 1.0650 2.0387 30 1 3.5960 -0.0924 3.9179 31 1 1.6000 -1.9931 4.0235 32 1 2.3316 -4.0293 5.2531 33 1 2.3651 -4.6371 7.6810 34 1 3.9708 -5.0046 8.4479 35 1 4.8876 -7.3536 7.8483 36 1 3.1646 -7.6230 8.2041 37 1 5.9504 -8.6778 5.7665 38 1 5.0913 -10.7512 4.4048 39 1 1.8404 -9.3063 6.6420 40 1 5.6917 -5.7140 6.4951 41 1 4.8077 -5.6439 4.9092 42 1 3.7322 -2.7430 1.9597 43 1 2.4471 -3.8276 2.5532 44 1 0.7216 -2.4137 1.6347 45 1 1.9312 -2.6488 0.3525 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:15 Heat of formation + Delta-G solvation = 51.081941 kcal Electronic energy + Delta-G solvation = -26502.116563 eV Core-core repulsion = 22716.560100 eV Total energy + Delta-G solvation = -3785.556463 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.92847 -41.64325 -40.26366 -39.08023 -37.49476 -35.41744 -34.07948 -33.33320 -32.81496 -30.40219 -28.94798 -27.45022 -26.71909 -25.43061 -24.30519 -23.53361 -22.24178 -21.98353 -21.78084 -20.35722 -19.22151 -19.05868 -18.41651 -18.31969 -17.62694 -17.13532 -16.55458 -16.39998 -15.96564 -15.77184 -15.47204 -15.24305 -14.95973 -14.88853 -14.74196 -14.69407 -14.35913 -14.20555 -14.06864 -13.85438 -13.73325 -13.66082 -13.43438 -12.93818 -12.74720 -12.46616 -12.33932 -11.79152 -11.73822 -11.69449 -11.34351 -11.28279 -10.93914 -10.88942 -10.45690 -10.27704 -10.15374 -9.42430 -8.49211 -4.91122 1.18332 1.27513 1.37105 1.42578 1.57723 1.82743 1.94302 1.95278 2.25516 2.59921 3.39247 3.45621 3.49311 3.62468 3.68538 3.74773 3.80689 3.90300 3.91593 4.01916 4.06166 4.19220 4.21438 4.28559 4.41655 4.52563 4.57329 4.61160 4.61878 4.69679 4.74752 4.76214 4.81218 4.83684 4.97856 4.99131 5.01579 5.14654 5.20224 5.26781 5.37642 5.52385 5.55527 5.84790 6.21741 6.35123 6.40288 6.69226 6.79575 7.05780 7.18916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.059 4.059 3 Si 0.742 3.258 4 C -0.247 4.247 5 C 0.136 3.864 6 N -0.736 5.736 7 C 0.137 3.863 8 C 0.518 3.482 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.110 3.890 12 H 0.087 0.913 13 C -0.119 4.119 14 C -0.116 4.116 15 H 0.095 0.905 16 C 0.110 3.890 17 N -0.451 5.451 18 C -0.046 4.046 19 C -0.067 4.067 20 N -0.546 5.546 21 C 0.174 3.826 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.052 4.052 25 H 0.387 0.613 26 H 0.080 0.920 27 H -0.294 1.294 28 H -0.299 1.299 29 H 0.139 0.861 30 H 0.408 0.592 31 H 0.104 0.896 32 H 0.416 0.584 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.194 0.806 38 H 0.169 0.831 39 H 0.228 0.772 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 0.742 3.586 3.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.169 4.169 3 Si 0.650 3.350 4 C -0.257 4.257 5 C 0.016 3.984 6 N -0.369 5.369 7 C 0.028 3.972 8 C 0.304 3.696 9 O -0.447 6.447 10 N -0.348 5.348 11 C 0.004 3.996 12 H 0.105 0.895 13 C -0.157 4.157 14 C -0.135 4.135 15 H 0.113 0.887 16 C -0.011 4.011 17 N -0.133 5.133 18 C -0.180 4.180 19 C -0.214 4.214 20 N -0.265 5.265 21 C -0.108 4.108 22 C -0.184 4.184 23 C -0.158 4.158 24 C -0.089 4.089 25 H 0.236 0.764 26 H 0.098 0.902 27 H -0.221 1.221 28 H -0.227 1.227 29 H 0.156 0.844 30 H 0.245 0.755 31 H 0.122 0.878 32 H 0.253 0.747 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.211 0.789 38 H 0.186 0.814 39 H 0.245 0.755 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.415 1.003 4.073 4.215 hybrid contribution -0.739 0.572 -0.401 1.017 sum -0.324 1.575 3.672 4.009 Atomic orbital electron populations 1.86572 1.19650 1.80375 1.50534 1.24733 0.83170 1.09986 0.99033 0.94483 0.90975 0.73670 0.75887 1.20147 1.12413 0.96039 0.97150 1.20520 0.95495 0.96555 0.85866 1.44325 1.54943 1.12795 1.24790 1.21084 0.97558 0.84029 0.94540 1.20763 0.87138 0.80274 0.81427 1.90722 1.24377 1.61253 1.68349 1.45525 1.21044 1.30017 1.38169 1.21896 0.93075 0.94913 0.89666 0.89486 1.23285 1.02739 0.92516 0.97178 1.22934 0.98939 0.93105 0.98543 0.88678 1.22230 1.05953 0.81820 0.91135 1.45744 1.09189 1.24291 1.34105 1.23048 0.95089 0.99868 0.99980 1.22592 0.92309 1.00823 1.05683 1.70238 1.13937 1.25713 1.16610 1.25509 0.95645 0.90348 0.99346 1.23517 0.98555 0.95256 1.01034 1.21831 1.00900 0.99436 0.93615 1.19956 0.98483 0.91260 0.99224 0.76400 0.90200 1.22134 1.22690 0.84385 0.75500 0.87827 0.74698 0.89142 0.86585 0.87431 0.86469 0.78906 0.81366 0.75543 0.88084 0.92611 0.91652 0.88541 0.91748 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.06 12.86 -148.98 -1.92 -3.97 16 2 C -0.06 -0.06 2.80 71.24 0.20 0.14 16 3 Si 0.74 -0.07 29.92 68.60 2.05 1.99 16 4 C -0.25 -0.57 5.40 -16.76 -0.09 -0.66 16 5 C 0.14 0.26 9.62 83.41 0.80 1.06 16 6 N -0.74 -1.09 5.47 -329.00 -1.80 -2.88 16 7 C 0.14 -0.19 3.36 44.33 0.15 -0.04 16 8 C 0.52 0.24 7.09 87.66 0.62 0.86 16 9 O -0.57 -4.96 15.68 -3.03 -0.05 -5.00 16 10 N -0.70 4.00 5.26 -440.03 -2.32 1.69 16 11 C 0.11 -0.68 4.32 45.52 0.20 -0.48 16 12 H 0.09 -0.12 7.47 -2.39 -0.02 -0.14 16 13 C -0.12 1.46 7.39 31.12 0.23 1.69 16 14 C -0.12 1.28 3.84 -10.27 -0.04 1.24 16 15 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 16 C 0.11 -1.20 5.99 86.38 0.52 -0.68 16 17 N -0.45 1.49 2.75 -529.05 -1.46 0.03 16 18 C -0.05 0.01 11.58 83.09 0.96 0.98 16 19 C -0.07 -0.38 11.87 83.52 0.99 0.61 16 20 N -0.55 -4.84 11.25 -200.31 -2.25 -7.09 16 21 C 0.17 0.16 12.56 180.26 2.26 2.42 16 22 C -0.14 1.04 7.43 31.12 0.23 1.27 16 23 C -0.12 0.24 5.48 30.79 0.17 0.41 16 24 C -0.05 -0.01 5.85 29.71 0.17 0.16 16 25 H 0.39 -1.41 8.74 -74.06 -0.65 -2.06 16 26 H 0.08 -0.14 7.96 -2.38 -0.02 -0.16 16 27 H -0.29 -1.37 7.11 99.48 0.71 -0.66 16 28 H -0.30 -1.90 6.88 99.48 0.68 -1.22 16 29 H 0.14 0.01 4.34 -2.91 -0.01 0.00 16 30 H 0.41 0.71 8.10 -92.71 -0.75 -0.04 16 31 H 0.10 -0.44 8.14 -2.39 -0.02 -0.45 16 32 H 0.42 -4.51 8.70 -92.71 -0.81 -5.31 16 33 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.12 -1.68 8.10 -2.39 -0.02 -1.70 16 35 H 0.11 -1.38 7.84 -2.39 -0.02 -1.40 16 36 H 0.12 -1.68 8.14 -2.39 -0.02 -1.70 16 37 H 0.19 -1.12 8.06 -2.91 -0.02 -1.15 16 38 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.23 -1.43 8.06 -2.91 -0.02 -1.45 16 40 H 0.10 -0.85 7.90 -2.38 -0.02 -0.87 16 41 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -25.42 368.35 -1.52 -26.94 By element: Atomic # 1 Polarization: -19.51 SS G_CDS: -1.17 Total: -20.67 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 7.38 Total: 8.98 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -7.82 Total: -8.26 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.96 Total: -8.98 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.05 Total: 1.99 kcal Total: -25.42 -1.52 -26.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.021 kcal (2) G-P(sol) polarization free energy of solvation -25.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds