Wall clock time and date at job start Sun Mar 7 2021 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46811 * 2 1 4 4 C 1.50694 * 109.47342 * 119.99844 * 2 1 3 5 5 C 1.31113 * 118.54928 * 249.97806 * 4 2 1 6 6 N 1.38923 * 121.85085 * 180.42424 * 5 4 2 7 7 C 1.47029 * 118.88564 * 346.69252 * 6 5 4 8 8 C 1.53541 * 107.66000 * 43.65794 * 7 6 5 9 9 C 1.50205 * 118.54756 * 70.00366 * 4 2 1 10 10 C 1.50703 * 109.32749 * 39.66280 * 9 4 2 11 11 O 1.21286 * 119.99513 * 120.86855 * 10 9 4 12 12 N 1.34769 * 120.00205 * 300.86237 * 10 9 4 13 13 C 1.46501 * 120.00014 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.85074 * 336.20143 * 13 12 10 15 15 C 1.53782 * 113.61142 * 107.50467 * 13 12 10 16 16 C 1.53962 * 87.11063 * 89.18830 * 15 13 12 17 17 H 1.08993 * 113.61598 * 270.84305 * 16 15 13 18 18 C 1.52999 * 113.66529 * 139.88900 * 16 15 13 19 19 N 1.46494 * 109.47391 * 87.55384 * 18 16 15 20 20 C 1.36883 * 126.39433 * 269.71595 * 19 18 16 21 21 C 1.34674 * 106.81550 * 179.83671 * 20 19 18 22 22 N 1.34129 * 108.01880 * 0.42221 * 21 20 19 23 23 C 1.30495 * 109.25683 * 359.73125 * 22 21 20 24 24 C 1.53781 * 113.61619 * 205.00312 * 13 12 10 25 25 H 0.96697 * 113.99846 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47257 * 240.00326 * 2 1 3 27 27 H 1.48495 * 110.00226 * 60.00214 * 3 2 1 28 28 H 1.48509 * 109.99897 * 181.32212 * 3 2 1 29 29 H 1.07998 * 119.07758 * 0.43274 * 5 4 2 30 30 H 0.97002 * 120.55863 * 166.66196 * 6 5 4 31 31 H 1.09000 * 109.81907 * 284.12238 * 7 6 5 32 32 H 1.08997 * 109.82486 * 163.20000 * 7 6 5 33 33 H 1.08995 * 109.62327 * 179.32923 * 8 7 6 34 34 H 1.09000 * 109.77196 * 58.86224 * 8 7 6 35 35 H 1.09007 * 109.19041 * 280.09893 * 9 4 2 36 36 H 0.97001 * 120.00013 * 0.02562 * 12 10 9 37 37 H 1.08997 * 113.61668 * 203.66381 * 15 13 12 38 38 H 1.08998 * 113.61674 * 334.48890 * 15 13 12 39 39 H 1.09002 * 109.47053 * 207.55709 * 18 16 15 40 40 H 1.09004 * 109.47121 * 327.55345 * 18 16 15 41 41 H 1.07994 * 126.59513 * 359.97438 * 20 19 18 42 42 H 1.07999 * 125.99035 * 180.11515 * 21 20 19 43 43 H 1.07997 * 125.64719 * 180.02562 * 23 22 21 44 44 H 1.09002 * 113.61445 * 25.43587 * 24 13 12 45 45 H 1.09002 * 113.61408 * 156.25317 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 2.5120 -0.0028 2.1692 6 7 3.0079 -0.5881 3.3274 7 6 2.6240 -1.9715 3.6447 8 6 2.7182 -2.7899 2.3490 9 6 1.7453 -2.1977 1.3269 10 6 1.9984 -2.8205 -0.0219 11 8 2.8698 -3.6542 -0.1509 12 7 1.2564 -2.4513 -1.0846 13 6 1.5029 -3.0564 -2.3959 14 1 2.5149 -3.4484 -2.4977 15 6 0.4100 -4.0462 -2.8327 16 6 -0.3154 -2.8450 -3.4663 17 1 -0.9967 -2.3369 -2.7840 18 6 -0.9531 -3.1577 -4.8215 19 7 -2.3049 -3.6834 -4.6155 20 6 -2.6499 -4.9989 -4.4610 21 6 -3.9860 -5.0344 -4.2955 22 7 -4.4452 -3.7757 -4.3568 23 6 -3.4439 -2.9611 -4.5483 24 6 1.0632 -2.1722 -3.5748 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5346 1.7704 -0.0322 29 1 2.6074 1.0650 2.0386 30 1 3.5980 -0.0926 3.9167 31 1 1.6017 -1.9939 4.0224 32 1 3.3038 -2.3818 4.3913 33 1 2.4508 -3.8270 2.5508 34 1 3.7342 -2.7435 1.9567 35 1 0.7222 -2.4115 1.6366 36 1 0.5596 -1.7844 -0.9815 37 1 0.7524 -4.7813 -3.5609 38 1 -0.1305 -4.4955 -1.9997 39 1 -1.0044 -2.2467 -5.4178 40 1 -0.3501 -3.9005 -5.3440 41 1 -1.9794 -5.8455 -4.4681 42 1 -4.5835 -5.9214 -4.1452 43 1 -3.5144 -1.8871 -4.6377 44 1 1.0492 -1.1077 -3.3408 45 1 1.5854 -2.3941 -4.5055 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:20 Heat of formation + Delta-G solvation = 60.847280 kcal Electronic energy + Delta-G solvation = -27729.595892 eV Core-core repulsion = 23944.462886 eV Total energy + Delta-G solvation = -3785.133006 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.91415 -41.79243 -40.31076 -38.87084 -37.83130 -35.32856 -34.12115 -33.16818 -32.90482 -30.35656 -28.96007 -27.41551 -26.92321 -26.04500 -24.13448 -23.28217 -22.20439 -21.98698 -21.79414 -20.42254 -19.33439 -18.89358 -18.61598 -18.38327 -17.79995 -17.32691 -16.64401 -16.49214 -16.02156 -15.76483 -15.26603 -15.24629 -15.09506 -14.88219 -14.85004 -14.64310 -14.44660 -14.29068 -14.03610 -13.78718 -13.75449 -13.62747 -13.57008 -12.91515 -12.88490 -12.49661 -12.29054 -11.98915 -11.79600 -11.77887 -11.52004 -11.50567 -10.79834 -10.75886 -10.47140 -10.41722 -9.84140 -9.36210 -8.61594 -5.06612 1.08276 1.19941 1.20125 1.55543 1.73454 1.84922 1.87760 2.19444 2.37488 2.41696 3.17396 3.28273 3.34881 3.49958 3.55346 3.61759 3.65455 3.86026 3.88881 3.90562 4.00242 4.06220 4.08179 4.17406 4.27417 4.29171 4.37199 4.48710 4.49030 4.52322 4.60742 4.61864 4.72144 4.76501 4.79790 4.86419 4.89069 5.01341 5.07752 5.22897 5.30134 5.38093 5.56364 5.89719 6.13374 6.30978 6.47462 6.55176 6.65922 7.25098 7.29964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.069 4.069 3 Si 0.669 3.331 4 C -0.236 4.236 5 C 0.152 3.848 6 N -0.747 5.747 7 C 0.120 3.880 8 C -0.121 4.121 9 C -0.038 4.038 10 C 0.530 3.470 11 O -0.538 6.538 12 N -0.714 5.714 13 C 0.117 3.883 14 H 0.105 0.895 15 C -0.146 4.146 16 C -0.128 4.128 17 H 0.099 0.901 18 C 0.114 3.886 19 N -0.457 5.457 20 C -0.054 4.054 21 C -0.031 4.031 22 N -0.496 5.496 23 C 0.179 3.821 24 C -0.137 4.137 25 H 0.377 0.623 26 H 0.080 0.920 27 H -0.252 1.252 28 H -0.256 1.256 29 H 0.125 0.875 30 H 0.403 0.597 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.203 0.797 44 H 0.080 0.920 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 3.993 -1.777 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.181 4.181 3 Si 0.571 3.429 4 C -0.247 4.247 5 C 0.030 3.970 6 N -0.377 5.377 7 C -0.005 4.005 8 C -0.160 4.160 9 C -0.059 4.059 10 C 0.317 3.683 11 O -0.414 6.414 12 N -0.371 5.371 13 C 0.011 3.989 14 H 0.123 0.877 15 C -0.185 4.185 16 C -0.148 4.148 17 H 0.117 0.883 18 C -0.009 4.009 19 N -0.140 5.140 20 C -0.186 4.186 21 C -0.179 4.179 22 N -0.214 5.214 23 C -0.103 4.103 24 C -0.175 4.175 25 H 0.224 0.776 26 H 0.097 0.903 27 H -0.177 1.177 28 H -0.181 1.181 29 H 0.142 0.858 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.250 0.750 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.219 0.781 44 H 0.098 0.902 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.756 3.829 -0.794 4.784 hybrid contribution 0.710 -0.242 0.357 0.830 sum 3.466 3.587 -0.437 5.007 Atomic orbital electron populations 1.86543 1.18193 1.81129 1.49553 1.24820 0.84959 1.09700 0.98622 0.95432 0.81169 0.78641 0.87625 1.19586 1.14281 0.93507 0.97309 1.20273 0.94541 0.95574 0.86643 1.44563 1.54222 1.14837 1.24054 1.21677 1.00754 0.81196 0.96847 1.21751 1.00554 0.99366 0.94320 1.19702 1.01587 0.92089 0.92531 1.20531 0.80635 0.81232 0.85886 1.90703 1.32532 1.32963 1.85241 1.46212 1.38705 1.44289 1.07860 1.21790 1.00151 0.94472 0.82491 0.87685 1.23537 0.97359 0.96505 1.01099 1.23083 0.96356 0.98880 0.96432 0.88298 1.21962 0.80413 1.00934 0.97590 1.45570 1.08168 1.06987 1.53246 1.22730 0.98009 0.86642 1.11265 1.22341 0.92331 0.95666 1.07583 1.70308 1.30438 1.01469 1.19144 1.25013 0.80327 0.99311 1.05685 1.23342 0.95150 0.99996 0.99046 0.77606 0.90290 1.17734 1.18097 0.85783 0.76207 0.91774 0.89639 0.89869 0.90065 0.88235 0.74966 0.88973 0.90825 0.88484 0.88771 0.81147 0.81486 0.78058 0.90154 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.19 11.38 -35.23 -0.40 0.79 16 2 C -0.07 0.09 1.68 36.00 0.06 0.15 16 3 Si 0.67 -1.24 29.92 -169.99 -5.09 -6.32 16 4 C -0.24 -0.27 5.07 -101.34 -0.51 -0.79 16 5 C 0.15 0.17 9.61 -16.08 -0.15 0.02 16 6 N -0.75 0.12 5.83 -60.69 -0.35 -0.24 16 7 C 0.12 -0.08 7.16 -3.47 -0.02 -0.10 16 8 C -0.12 -0.14 4.91 -26.43 -0.13 -0.27 16 9 C -0.04 -0.06 2.75 -93.14 -0.26 -0.31 16 10 C 0.53 1.43 6.85 -10.99 -0.08 1.36 16 11 O -0.54 -3.33 15.40 5.55 0.09 -3.24 16 12 N -0.71 0.20 3.57 -53.01 -0.19 0.01 16 13 C 0.12 -0.16 4.32 -67.12 -0.29 -0.45 16 14 H 0.11 0.05 7.46 -51.93 -0.39 -0.33 16 15 C -0.15 0.29 7.44 -25.82 -0.19 0.10 16 16 C -0.13 0.50 3.85 -89.71 -0.35 0.15 16 17 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 18 C 0.11 -0.45 5.99 -4.05 -0.02 -0.48 16 19 N -0.46 0.31 2.75 -118.58 -0.33 -0.01 16 20 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 21 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 22 N -0.50 -2.15 11.25 -14.67 -0.17 -2.31 16 23 C 0.18 0.17 12.56 -90.38 -1.14 -0.97 16 24 C -0.14 0.63 7.38 -25.92 -0.19 0.44 16 25 H 0.38 -2.58 8.74 45.56 0.40 -2.19 16 26 H 0.08 -0.15 5.29 -51.93 -0.27 -0.42 16 27 H -0.25 -0.26 6.88 56.52 0.39 0.12 16 28 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 29 H 0.13 0.08 4.34 -52.49 -0.23 -0.15 16 30 H 0.40 -0.83 8.96 -40.82 -0.37 -1.20 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 33 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.08 0.24 7.76 -51.93 -0.40 -0.16 16 35 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.41 -0.70 5.22 -40.82 -0.21 -0.91 16 37 H 0.09 -0.25 7.90 -51.93 -0.41 -0.66 16 38 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.10 -0.54 8.14 -51.93 -0.42 -0.96 16 40 H 0.09 -0.44 7.85 -51.93 -0.41 -0.84 16 41 H 0.17 -0.31 8.06 -52.49 -0.42 -0.73 16 42 H 0.17 0.19 8.06 -52.49 -0.42 -0.24 16 43 H 0.20 -0.50 8.06 -52.49 -0.42 -0.93 16 44 H 0.08 -0.45 8.14 -51.93 -0.42 -0.87 16 45 H 0.10 -0.56 8.10 -51.93 -0.42 -0.98 16 LS Contribution 358.02 15.07 5.40 5.40 Total: 0.00 -10.55 358.02 -11.29 -21.84 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: -6.57 Total: -14.23 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.68 Total: -1.67 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -1.03 Total: -2.55 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: -0.32 Total: -2.45 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.09 Total: -6.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -10.55 -11.29 -21.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.685 kcal (2) G-P(sol) polarization free energy of solvation -10.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds