Wall clock time and date at job start Sun Mar 7 2021 04:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46811 * 2 1 4 4 C 1.50694 * 109.47342 * 119.99844 * 2 1 3 5 5 C 1.31113 * 118.54928 * 249.97806 * 4 2 1 6 6 N 1.38923 * 121.85085 * 180.42424 * 5 4 2 7 7 C 1.47029 * 118.88564 * 346.69252 * 6 5 4 8 8 C 1.53541 * 107.66000 * 43.65794 * 7 6 5 9 9 C 1.50205 * 118.54756 * 70.00366 * 4 2 1 10 10 C 1.50703 * 109.32749 * 39.66280 * 9 4 2 11 11 O 1.21286 * 119.99513 * 120.86855 * 10 9 4 12 12 N 1.34769 * 120.00205 * 300.86237 * 10 9 4 13 13 C 1.46501 * 120.00014 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.85074 * 336.20143 * 13 12 10 15 15 C 1.53782 * 113.61142 * 107.50467 * 13 12 10 16 16 C 1.53962 * 87.11063 * 89.18830 * 15 13 12 17 17 H 1.08993 * 113.61598 * 270.84305 * 16 15 13 18 18 C 1.52999 * 113.66529 * 139.88900 * 16 15 13 19 19 N 1.46494 * 109.47391 * 87.55384 * 18 16 15 20 20 C 1.36883 * 126.39433 * 269.71595 * 19 18 16 21 21 C 1.34674 * 106.81550 * 179.83671 * 20 19 18 22 22 N 1.34129 * 108.01880 * 0.42221 * 21 20 19 23 23 C 1.30495 * 109.25683 * 359.73125 * 22 21 20 24 24 C 1.53781 * 113.61619 * 205.00312 * 13 12 10 25 25 H 0.96697 * 113.99846 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47257 * 240.00326 * 2 1 3 27 27 H 1.48495 * 110.00226 * 60.00214 * 3 2 1 28 28 H 1.48509 * 109.99897 * 181.32212 * 3 2 1 29 29 H 1.07998 * 119.07758 * 0.43274 * 5 4 2 30 30 H 0.97002 * 120.55863 * 166.66196 * 6 5 4 31 31 H 1.09000 * 109.81907 * 284.12238 * 7 6 5 32 32 H 1.08997 * 109.82486 * 163.20000 * 7 6 5 33 33 H 1.08995 * 109.62327 * 179.32923 * 8 7 6 34 34 H 1.09000 * 109.77196 * 58.86224 * 8 7 6 35 35 H 1.09007 * 109.19041 * 280.09893 * 9 4 2 36 36 H 0.97001 * 120.00013 * 0.02562 * 12 10 9 37 37 H 1.08997 * 113.61668 * 203.66381 * 15 13 12 38 38 H 1.08998 * 113.61674 * 334.48890 * 15 13 12 39 39 H 1.09002 * 109.47053 * 207.55709 * 18 16 15 40 40 H 1.09004 * 109.47121 * 327.55345 * 18 16 15 41 41 H 1.07994 * 126.59513 * 359.97438 * 20 19 18 42 42 H 1.07999 * 125.99035 * 180.11515 * 21 20 19 43 43 H 1.07997 * 125.64719 * 180.02562 * 23 22 21 44 44 H 1.09002 * 113.61445 * 25.43587 * 24 13 12 45 45 H 1.09002 * 113.61408 * 156.25317 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 2.5120 -0.0028 2.1692 6 7 3.0079 -0.5881 3.3274 7 6 2.6240 -1.9715 3.6447 8 6 2.7182 -2.7899 2.3490 9 6 1.7453 -2.1977 1.3269 10 6 1.9984 -2.8205 -0.0219 11 8 2.8698 -3.6542 -0.1509 12 7 1.2564 -2.4513 -1.0846 13 6 1.5029 -3.0564 -2.3959 14 1 2.5149 -3.4484 -2.4977 15 6 0.4100 -4.0462 -2.8327 16 6 -0.3154 -2.8450 -3.4663 17 1 -0.9967 -2.3369 -2.7840 18 6 -0.9531 -3.1577 -4.8215 19 7 -2.3049 -3.6834 -4.6155 20 6 -2.6499 -4.9989 -4.4610 21 6 -3.9860 -5.0344 -4.2955 22 7 -4.4452 -3.7757 -4.3568 23 6 -3.4439 -2.9611 -4.5483 24 6 1.0632 -2.1722 -3.5748 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5346 1.7704 -0.0322 29 1 2.6074 1.0650 2.0386 30 1 3.5980 -0.0926 3.9167 31 1 1.6017 -1.9939 4.0224 32 1 3.3038 -2.3818 4.3913 33 1 2.4508 -3.8270 2.5508 34 1 3.7342 -2.7435 1.9567 35 1 0.7222 -2.4115 1.6366 36 1 0.5596 -1.7844 -0.9815 37 1 0.7524 -4.7813 -3.5609 38 1 -0.1305 -4.4955 -1.9997 39 1 -1.0044 -2.2467 -5.4178 40 1 -0.3501 -3.9005 -5.3440 41 1 -1.9794 -5.8455 -4.4681 42 1 -4.5835 -5.9214 -4.1452 43 1 -3.5144 -1.8871 -4.6377 44 1 1.0492 -1.1077 -3.3408 45 1 1.5854 -2.3941 -4.5055 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:19 Heat of formation + Delta-G solvation = 60.090959 kcal Electronic energy + Delta-G solvation = -27729.628689 eV Core-core repulsion = 23944.462886 eV Total energy + Delta-G solvation = -3785.165803 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.89687 -41.84598 -40.21065 -38.96610 -37.70080 -35.30794 -34.15832 -33.19634 -32.92075 -30.37383 -28.84445 -27.39762 -26.67534 -26.02775 -24.01021 -23.30128 -22.23145 -22.06573 -21.74278 -20.29205 -19.38073 -18.87443 -18.55444 -18.26700 -17.82930 -17.28111 -16.57724 -16.41813 -15.94172 -15.84242 -15.25311 -15.17986 -15.05173 -14.88512 -14.86750 -14.56318 -14.41093 -14.24487 -14.02136 -13.79123 -13.71307 -13.56146 -13.39341 -12.91482 -12.69541 -12.38459 -12.28605 -12.02795 -11.77554 -11.64707 -11.55189 -11.29297 -10.94283 -10.86498 -10.43551 -10.35463 -9.83267 -9.39852 -8.63718 -4.95280 1.02867 1.21333 1.29979 1.57643 1.64482 1.95404 1.99237 2.18807 2.28379 2.45728 3.40164 3.44045 3.52623 3.53531 3.66229 3.74681 3.84589 3.92019 3.95008 4.07107 4.10354 4.13610 4.22241 4.23682 4.32528 4.44791 4.52378 4.57020 4.63123 4.65866 4.68104 4.75650 4.80801 4.84013 4.88617 5.01765 5.03313 5.06225 5.12487 5.22701 5.27070 5.41029 5.61798 5.86777 6.11011 6.39414 6.47809 6.73426 6.94452 7.19141 7.21810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.071 4.071 3 Si 0.762 3.238 4 C -0.252 4.252 5 C 0.139 3.861 6 N -0.748 5.748 7 C 0.122 3.878 8 C -0.120 4.120 9 C -0.038 4.038 10 C 0.525 3.475 11 O -0.581 6.581 12 N -0.700 5.700 13 C 0.100 3.900 14 H 0.083 0.917 15 C -0.149 4.149 16 C -0.114 4.114 17 H 0.095 0.905 18 C 0.111 3.889 19 N -0.451 5.451 20 C -0.049 4.049 21 C -0.068 4.068 22 N -0.547 5.547 23 C 0.178 3.822 24 C -0.117 4.117 25 H 0.399 0.601 26 H 0.086 0.914 27 H -0.291 1.291 28 H -0.299 1.299 29 H 0.126 0.874 30 H 0.412 0.588 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.418 0.582 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.233 0.767 44 H 0.100 0.900 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 5.337 -2.992 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.182 4.182 3 Si 0.669 3.331 4 C -0.263 4.263 5 C 0.016 3.984 6 N -0.378 5.378 7 C -0.002 4.002 8 C -0.159 4.159 9 C -0.059 4.059 10 C 0.312 3.688 11 O -0.461 6.461 12 N -0.356 5.356 13 C -0.005 4.005 14 H 0.101 0.899 15 C -0.188 4.188 16 C -0.133 4.133 17 H 0.113 0.887 18 C -0.010 4.010 19 N -0.133 5.133 20 C -0.183 4.183 21 C -0.215 4.215 22 N -0.266 5.266 23 C -0.105 4.105 24 C -0.155 4.155 25 H 0.250 0.750 26 H 0.104 0.896 27 H -0.220 1.220 28 H -0.227 1.227 29 H 0.143 0.857 30 H 0.248 0.752 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.260 0.740 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.208 0.792 42 H 0.185 0.815 43 H 0.249 0.751 44 H 0.119 0.881 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.739 5.192 -2.048 6.217 hybrid contribution 0.736 -0.668 0.766 1.255 sum 3.475 4.524 -1.282 5.847 Atomic orbital electron populations 1.86500 1.17349 1.81654 1.51244 1.24835 0.85729 1.09909 0.97753 0.94524 0.77263 0.76110 0.85160 1.19875 1.14620 0.93389 0.98422 1.20435 0.94873 0.95809 0.87276 1.44631 1.54221 1.15054 1.23939 1.21715 1.01510 0.80733 0.96217 1.21708 0.99206 0.99776 0.95210 1.19701 1.01537 0.92550 0.92090 1.20785 0.80362 0.80752 0.86865 1.90676 1.34547 1.34979 1.85934 1.46155 1.37959 1.43741 1.07767 1.21976 0.99256 0.96212 0.83080 0.89929 1.23566 0.97261 0.97274 1.00674 1.22939 0.96563 0.97514 0.96295 0.88687 1.22241 0.78674 1.02407 0.97713 1.45745 1.09110 1.06344 1.52119 1.23022 0.97527 0.87872 1.09866 1.22568 0.93693 0.95678 1.09518 1.70236 1.32644 1.02510 1.21242 1.25571 0.80185 1.00344 1.04404 1.23312 0.93857 1.00469 0.97884 0.74963 0.89617 1.21952 1.22734 0.85736 0.75232 0.91429 0.87762 0.90003 0.92214 0.88175 0.73950 0.88135 0.93425 0.85806 0.87590 0.79185 0.81525 0.75119 0.88143 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.19 11.38 -148.98 -1.69 1.49 16 2 C -0.07 0.22 1.68 71.23 0.12 0.34 16 3 Si 0.76 -3.05 29.92 68.60 2.05 -1.00 16 4 C -0.25 -0.72 5.07 -16.76 -0.08 -0.81 16 5 C 0.14 0.41 9.61 83.42 0.80 1.21 16 6 N -0.75 -0.21 5.83 -345.91 -2.02 -2.22 16 7 C 0.12 -0.10 7.16 86.46 0.62 0.52 16 8 C -0.12 -0.46 4.91 30.79 0.15 -0.31 16 9 C -0.04 -0.16 2.75 -12.43 -0.03 -0.19 16 10 C 0.52 3.57 6.85 87.66 0.60 4.17 16 11 O -0.58 -8.54 15.40 -3.05 -0.05 -8.59 16 12 N -0.70 0.25 3.57 -440.03 -1.57 -1.32 16 13 C 0.10 -0.29 4.32 45.52 0.20 -0.10 16 14 H 0.08 0.17 7.46 -2.38 -0.02 0.15 16 15 C -0.15 0.63 7.44 31.18 0.23 0.86 16 16 C -0.11 1.12 3.85 -10.20 -0.04 1.08 16 17 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 18 C 0.11 -1.18 5.99 86.38 0.52 -0.67 16 19 N -0.45 1.25 2.75 -529.08 -1.46 -0.21 16 20 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 21 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 22 N -0.55 -5.12 11.25 -200.31 -2.25 -7.37 16 23 C 0.18 0.17 12.56 180.26 2.26 2.44 16 24 C -0.12 1.37 7.38 31.12 0.23 1.60 16 25 H 0.40 -6.46 8.74 -74.06 -0.65 -7.11 16 26 H 0.09 -0.41 5.29 -2.39 -0.01 -0.42 16 27 H -0.29 -0.74 6.88 99.48 0.68 -0.05 16 28 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 29 H 0.13 0.26 4.34 -2.91 -0.01 0.25 16 30 H 0.41 -1.54 8.96 -92.71 -0.83 -2.37 16 31 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.49 7.76 -2.39 -0.02 0.47 16 35 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.42 -1.70 5.22 -92.71 -0.48 -2.19 16 37 H 0.10 -0.61 7.90 -2.39 -0.02 -0.62 16 38 H 0.05 0.06 8.14 -2.39 -0.02 0.05 16 39 H 0.12 -1.89 8.14 -2.39 -0.02 -1.91 16 40 H 0.11 -1.30 7.85 -2.38 -0.02 -1.32 16 41 H 0.19 -0.81 8.06 -2.91 -0.02 -0.84 16 42 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.23 -1.62 8.06 -2.91 -0.02 -1.64 16 44 H 0.10 -1.50 8.14 -2.39 -0.02 -1.52 16 45 H 0.12 -1.73 8.10 -2.39 -0.02 -1.75 16 Total: 0.00 -28.40 358.02 -0.37 -28.77 By element: Atomic # 1 Polarization: -20.24 SS G_CDS: -0.92 Total: -21.16 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 7.53 Total: 11.60 kcal Atomic # 7 Polarization: -3.83 SS G_CDS: -7.30 Total: -11.12 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -1.74 Total: -7.10 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -1.00 kcal Total: -28.40 -0.37 -28.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.863 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds