Wall clock time and date at job start Sun Mar 7 2021 04:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47114 * 2 1 4 4 C 1.50702 * 109.46858 * 120.00095 * 2 1 3 5 5 C 1.34492 * 125.49312 * 209.97729 * 4 2 1 6 6 C 1.46755 * 106.36670 * 180.02562 * 5 4 2 7 7 C 1.47261 * 126.97249 * 179.97438 * 6 5 4 8 8 O 1.21620 * 119.99955 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99792 * 359.97438 * 7 6 5 10 10 C 1.46499 * 119.99934 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84831 * 334.66215 * 10 9 7 12 12 C 1.53775 * 113.61616 * 105.86163 * 10 9 7 13 13 C 1.54047 * 86.98460 * 89.16320 * 12 10 9 14 14 H 1.09004 * 113.68755 * 270.86920 * 13 12 10 15 15 C 1.53004 * 113.62193 * 139.98162 * 13 12 10 16 16 N 1.46496 * 109.47268 * 87.49907 * 15 13 12 17 17 C 1.36877 * 126.39789 * 269.71332 * 16 15 13 18 18 C 1.34675 * 106.81588 * 179.84540 * 17 16 15 19 19 N 1.34121 * 108.02053 * 0.42389 * 18 17 16 20 20 C 1.30506 * 109.25735 * 359.73078 * 19 18 17 21 21 C 1.53773 * 87.08200 * 25.43114 * 13 12 10 22 22 C 1.36339 * 106.06027 * 359.97438 * 6 5 4 23 23 C 1.50990 * 126.79471 * 180.02562 * 22 6 5 24 24 C 1.53394 * 108.25678 * 164.34474 * 23 22 6 25 25 C 1.53158 * 109.11432 * 48.41878 * 24 23 22 26 26 C 1.53114 * 109.53221 * 290.54593 * 25 24 23 27 27 N 1.35215 * 108.65895 * 0.02562 * 22 6 5 28 28 H 0.96697 * 114.00555 * 300.00173 * 1 2 3 29 29 H 1.09001 * 109.47248 * 240.00178 * 2 1 3 30 30 H 1.48500 * 109.99880 * 178.67504 * 3 2 1 31 31 H 1.48493 * 110.00181 * 299.99858 * 3 2 1 32 32 H 1.08001 * 126.81979 * 359.97438 * 5 4 2 33 33 H 0.97002 * 119.99935 * 0.02562 * 9 7 6 34 34 H 1.09008 * 113.61313 * 203.66326 * 12 10 9 35 35 H 1.08997 * 113.61966 * 334.56794 * 12 10 9 36 36 H 1.09001 * 109.47337 * 207.50455 * 15 13 12 37 37 H 1.09001 * 109.46625 * 327.50202 * 15 13 12 38 38 H 1.07997 * 126.59408 * 359.97438 * 17 16 15 39 39 H 1.08000 * 125.98704 * 180.19431 * 18 17 16 40 40 H 1.08000 * 125.65076 * 179.97438 * 20 19 18 41 41 H 1.09001 * 113.61549 * 220.03048 * 21 13 12 42 42 H 1.08996 * 113.69394 * 89.12706 * 21 13 12 43 43 H 1.09007 * 109.70569 * 44.65944 * 23 22 6 44 44 H 1.08996 * 109.74146 * 284.05679 * 23 22 6 45 45 H 1.09002 * 109.54365 * 168.33330 * 24 23 22 46 46 H 1.08999 * 109.54211 * 288.51084 * 24 23 22 47 47 H 1.08998 * 109.46200 * 50.48886 * 25 24 23 48 48 H 1.09000 * 109.46367 * 170.45552 * 25 24 23 49 49 H 1.08994 * 109.51684 * 291.06100 * 26 25 24 50 50 H 1.08999 * 109.64653 * 170.80652 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0858 -0.4467 1.8679 6 6 3.1555 -1.3782 2.9997 7 6 4.2341 -1.4810 3.9971 8 8 4.1616 -2.3052 4.8884 9 7 5.3020 -0.6622 3.9215 10 6 6.3752 -0.7648 4.9134 11 1 6.0364 -1.1812 5.8621 12 6 7.6535 -1.4260 4.3718 13 6 8.1066 -0.0157 3.9491 14 1 7.7823 0.2666 2.9474 15 6 9.5948 0.2475 4.1878 16 7 10.3623 -0.1953 3.0212 17 6 10.8974 -1.4398 2.8257 18 6 11.5144 -1.4150 1.6288 19 7 11.3681 -0.1861 1.1120 20 6 10.6790 0.5501 1.9405 21 6 7.1984 0.5252 5.0659 22 6 2.0192 -2.1293 2.9406 23 6 1.6151 -3.2341 3.8871 24 6 0.1223 -3.5208 3.6817 25 6 -0.1581 -3.6701 2.1834 26 6 -0.0052 -2.3106 1.4960 27 7 1.2883 -1.7250 1.8773 28 1 -0.3934 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 3.5346 1.7703 0.0323 31 1 1.5616 2.4679 -1.2084 32 1 3.8170 0.3015 1.5995 33 1 5.3600 -0.0051 3.2104 34 1 8.2773 -1.8708 5.1473 35 1 7.4754 -2.0987 3.5329 36 1 9.7546 1.3143 4.3444 37 1 9.9240 -0.3025 5.0694 38 1 10.8350 -2.2807 3.5005 39 1 12.0385 -2.2392 1.1679 40 1 10.4075 1.5841 1.7875 41 1 6.6529 1.4268 4.7869 42 1 7.6967 0.6136 6.0313 43 1 1.7907 -2.9192 4.9159 44 1 2.1947 -4.1322 3.6737 45 1 -0.1460 -4.4433 4.1966 46 1 -0.4661 -2.6953 4.0822 47 1 0.5498 -4.3766 1.7500 48 1 -1.1736 -4.0391 2.0390 49 1 -0.8122 -1.6498 1.8124 50 1 -0.0426 -2.4405 0.4144 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:23 Heat of formation + Delta-G solvation = 69.196895 kcal Electronic energy + Delta-G solvation = -31966.669823 eV Core-core repulsion = 27769.908984 eV Total energy + Delta-G solvation = -4196.760839 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.95080 -42.81932 -41.02627 -39.23328 -37.94851 -36.86601 -35.30849 -33.85176 -33.39560 -31.19993 -30.43548 -29.67036 -28.58552 -26.71593 -26.61648 -24.73445 -24.65324 -23.51324 -22.25041 -21.82289 -21.71743 -21.30357 -20.30416 -19.56265 -18.95739 -18.30422 -17.36902 -17.08284 -16.80649 -16.66127 -16.40533 -15.92349 -15.84861 -15.67583 -15.38903 -15.19454 -15.10953 -14.99666 -14.91597 -14.74190 -14.65214 -14.51690 -14.36806 -14.17553 -13.92282 -13.69667 -13.41992 -13.26368 -12.70869 -12.69035 -12.36048 -12.30028 -12.13503 -12.00799 -11.84367 -11.77437 -11.68528 -11.32384 -10.95163 -10.92069 -10.71805 -10.46509 -10.09009 -9.60901 -9.44742 -9.08845 -4.95267 0.67874 1.03713 1.16083 1.35917 1.64805 1.78798 1.93849 2.01180 2.22729 2.34781 2.48662 3.32609 3.40601 3.45017 3.51354 3.55920 3.67126 3.72571 3.78154 3.80733 3.83566 3.88809 4.05439 4.11373 4.18131 4.27527 4.30150 4.33427 4.39005 4.41903 4.53869 4.58490 4.58689 4.69434 4.73291 4.76769 4.77887 4.79113 4.79688 4.87336 4.95476 4.99617 5.01402 5.03770 5.13281 5.21069 5.22072 5.36408 5.63097 5.68200 5.82266 6.00251 6.18830 6.33123 6.59408 6.61342 7.16053 7.30850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.047 4.047 3 Si 0.798 3.202 4 C -0.008 4.008 5 C -0.173 4.173 6 C -0.257 4.257 7 C 0.591 3.409 8 O -0.586 6.586 9 N -0.701 5.701 10 C 0.112 3.888 11 H 0.086 0.914 12 C -0.147 4.147 13 C -0.116 4.116 14 H 0.089 0.911 15 C 0.111 3.889 16 N -0.451 5.451 17 C -0.047 4.047 18 C -0.068 4.068 19 N -0.546 5.546 20 C 0.174 3.826 21 C -0.116 4.116 22 C 0.108 3.892 23 C -0.054 4.054 24 C -0.122 4.122 25 C -0.136 4.136 26 C 0.105 3.895 27 N -0.424 5.424 28 H 0.394 0.606 29 H 0.110 0.890 30 H -0.276 1.276 31 H -0.293 1.293 32 H 0.161 0.839 33 H 0.409 0.591 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.194 0.806 39 H 0.169 0.831 40 H 0.229 0.771 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 4.196 3.990 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.157 4.157 3 Si 0.701 3.299 4 C -0.117 4.117 5 C -0.197 4.197 6 C -0.267 4.267 7 C 0.381 3.619 8 O -0.468 6.468 9 N -0.352 5.352 10 C 0.006 3.994 11 H 0.105 0.895 12 C -0.185 4.185 13 C -0.135 4.135 14 H 0.107 0.893 15 C -0.010 4.010 16 N -0.133 5.133 17 C -0.181 4.181 18 C -0.215 4.215 19 N -0.265 5.265 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.011 4.011 23 C -0.092 4.092 24 C -0.160 4.160 25 C -0.174 4.174 26 C -0.015 4.015 27 N -0.100 5.100 28 H 0.244 0.756 29 H 0.127 0.873 30 H -0.202 1.202 31 H -0.221 1.221 32 H 0.178 0.822 33 H 0.245 0.755 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.211 0.789 39 H 0.187 0.813 40 H 0.245 0.755 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.123 0.877 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.836 4.090 2.884 6.959 hybrid contribution 0.105 -1.063 -0.113 1.074 sum -4.731 3.027 2.770 6.263 Atomic orbital electron populations 1.86462 1.16894 1.81810 1.50677 1.24996 0.85300 1.10927 0.94457 0.93188 0.78276 0.73862 0.84539 1.20945 0.95873 0.95446 0.99475 1.21900 0.98525 1.02885 0.96385 1.19953 0.98281 1.06121 1.02356 1.17557 0.81355 0.79744 0.83204 1.90733 1.80156 1.38328 1.37557 1.45363 1.19840 1.38351 1.31615 1.21859 0.86294 0.98973 0.92229 0.89549 1.23573 0.97389 0.96482 1.01085 1.22954 0.93644 0.96799 1.00118 0.89270 1.22240 0.89360 1.03533 0.85890 1.45751 1.39879 1.10129 1.17562 1.23057 1.03713 0.90205 1.01096 1.22592 1.06930 0.96176 0.95757 1.70234 1.19674 1.04935 1.31668 1.25515 1.00371 1.00284 0.84700 1.23268 0.95805 0.96503 0.99864 1.20552 0.91581 0.97980 0.90990 1.20442 0.97116 0.94316 0.97284 1.21691 0.94248 1.03699 0.96347 1.21940 1.04549 0.95515 0.95384 1.22305 0.82149 0.95569 1.01476 1.44049 1.18085 1.26876 1.20987 0.75557 0.87288 1.20174 1.22085 0.82164 0.75475 0.87885 0.93447 0.86220 0.87241 0.78937 0.81325 0.75494 0.89109 0.86233 0.89775 0.90676 0.89371 0.90632 0.91941 0.87196 0.87689 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.38 10.68 -148.98 -1.59 0.79 16 2 C -0.05 0.14 2.99 71.24 0.21 0.35 16 3 Si 0.80 -3.87 31.29 68.60 2.15 -1.72 16 4 C -0.01 0.00 6.15 40.99 0.25 0.25 16 5 C -0.17 -0.23 9.09 23.64 0.21 -0.02 16 6 C -0.26 -1.58 6.28 -19.12 -0.12 -1.70 16 7 C 0.59 4.84 7.81 86.61 0.68 5.52 16 8 O -0.59 -8.73 14.96 -4.09 -0.06 -8.79 16 9 N -0.70 -0.81 5.26 -443.45 -2.33 -3.14 16 10 C 0.11 -0.16 4.29 45.52 0.20 0.03 16 11 H 0.09 0.24 7.50 -2.38 -0.02 0.22 16 12 C -0.15 0.41 7.45 31.21 0.23 0.64 16 13 C -0.12 0.86 3.85 -10.18 -0.04 0.82 16 14 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 15 C 0.11 -0.95 5.99 86.38 0.52 -0.43 16 16 N -0.45 0.41 2.75 -529.06 -1.46 -1.05 16 17 C -0.05 -0.09 11.58 83.09 0.96 0.87 16 18 C -0.07 -0.52 11.87 83.53 0.99 0.47 16 19 N -0.55 -5.93 11.25 -200.31 -2.25 -8.18 16 20 C 0.17 0.53 12.56 180.26 2.26 2.79 16 21 C -0.12 1.05 7.38 31.12 0.23 1.28 16 22 C 0.11 0.54 6.57 41.69 0.27 0.82 16 23 C -0.05 -0.20 5.32 30.07 0.16 -0.04 16 24 C -0.12 0.33 5.97 30.78 0.18 0.51 16 25 C -0.14 0.62 5.93 30.69 0.18 0.80 16 26 C 0.10 -0.41 5.32 86.32 0.46 0.05 16 27 N -0.42 -0.41 3.11 -493.66 -1.54 -1.95 16 28 H 0.39 -4.48 8.63 -74.06 -0.64 -5.12 16 29 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H -0.28 0.31 6.77 99.48 0.67 0.99 16 31 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 32 H 0.16 -0.43 6.30 -2.91 -0.02 -0.45 16 33 H 0.41 -1.27 7.83 -92.71 -0.73 -2.00 16 34 H 0.10 -0.52 7.90 -2.38 -0.02 -0.54 16 35 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.12 -1.50 8.14 -2.39 -0.02 -1.52 16 37 H 0.11 -1.18 7.85 -2.39 -0.02 -1.20 16 38 H 0.19 -0.66 8.06 -2.91 -0.02 -0.69 16 39 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.23 -0.98 8.06 -2.91 -0.02 -1.01 16 41 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.12 -1.47 8.10 -2.39 -0.02 -1.49 16 43 H 0.08 0.56 7.40 -2.38 -0.02 0.54 16 44 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 45 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.07 -0.27 8.12 -2.39 -0.02 -0.29 16 47 H 0.06 -0.12 8.11 -2.39 -0.02 -0.14 16 48 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 49 H 0.11 -0.80 7.94 -2.39 -0.02 -0.82 16 50 H 0.09 -0.31 7.69 -2.39 -0.02 -0.33 16 Total: 0.00 -26.74 402.09 0.37 -26.37 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -0.40 Total: -15.35 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 7.85 Total: 13.02 kcal Atomic # 7 Polarization: -6.74 SS G_CDS: -7.58 Total: -14.32 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -1.65 Total: -8.00 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.15 Total: -1.72 kcal Total: -26.74 0.37 -26.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.567 kcal (2) G-P(sol) polarization free energy of solvation -26.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds