Wall clock time and date at job start Sun Mar 7 2021 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47466 * 2 1 4 4 C 1.50699 * 109.46797 * 120.00205 * 2 1 3 5 5 C 1.38261 * 119.94766 * 65.00214 * 4 2 1 6 6 C 1.38149 * 120.05660 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.94034 * 359.97438 * 6 5 4 8 8 O 1.35908 * 120.05164 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99739 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47552 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99392 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00297 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00204 * 179.97438 * 13 11 10 15 15 H 1.09004 * 112.85022 * 336.20007 * 14 13 11 16 16 C 1.53787 * 113.61134 * 107.50189 * 14 13 11 17 17 C 1.53775 * 87.07791 * 89.12122 * 16 14 13 18 18 H 1.09008 * 113.69116 * 270.86757 * 17 16 14 19 19 C 1.53004 * 113.61580 * 139.98250 * 17 16 14 20 20 N 1.46504 * 109.47059 * 87.49776 * 19 17 16 21 21 C 1.36874 * 126.39529 * 90.00431 * 20 19 17 22 22 C 1.34675 * 106.81768 * 179.97438 * 21 20 19 23 23 N 1.34128 * 108.01655 * 359.97438 * 22 21 20 24 24 C 1.30499 * 109.26095 * 0.02562 * 23 22 21 25 25 C 1.53776 * 113.61740 * 204.99955 * 14 13 11 26 26 C 1.38732 * 119.89227 * 0.27545 * 7 6 5 27 27 C 1.38142 * 119.93961 * 359.47308 * 26 7 6 28 28 H 0.96702 * 114.00054 * 60.00128 * 1 2 3 29 29 H 1.09000 * 109.46812 * 239.99640 * 2 1 3 30 30 H 1.48506 * 109.99624 * 298.68219 * 3 2 1 31 31 H 1.48501 * 109.99845 * 59.99540 * 3 2 1 32 32 H 1.07998 * 119.97438 * 359.96785 * 5 4 2 33 33 H 1.08003 * 120.02627 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47038 * 60.00396 * 9 8 7 35 35 H 1.08994 * 109.47519 * 299.99840 * 9 8 7 36 36 H 1.09002 * 109.47294 * 59.99742 * 10 9 8 37 37 H 1.09008 * 109.47111 * 300.00402 * 10 9 8 38 38 H 0.97001 * 120.00184 * 359.97438 * 13 11 10 39 39 H 1.08997 * 113.61168 * 334.57039 * 16 14 13 40 40 H 1.09006 * 113.61290 * 203.66744 * 16 14 13 41 41 H 1.09001 * 109.46601 * 327.50372 * 19 17 16 42 42 H 1.08996 * 109.47508 * 207.50254 * 19 17 16 43 43 H 1.07999 * 126.59416 * 0.02562 * 21 20 19 44 44 H 1.08002 * 125.98988 * 179.73289 * 22 21 20 45 45 H 1.08000 * 125.64975 * 180.02562 * 24 23 22 46 46 H 1.09002 * 113.61516 * 156.33821 * 25 14 13 47 47 H 1.09003 * 113.69069 * 25.44725 * 25 14 13 48 48 H 1.07998 * 120.02802 * 179.72236 * 26 7 6 49 49 H 1.08005 * 119.96777 * 180.22570 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6840 -2.0605 1.3972 6 6 2.1429 -2.7139 2.5246 7 6 2.8529 -2.0144 3.4895 8 8 3.3059 -2.6551 4.5992 9 6 4.0298 -1.8719 5.5503 10 6 4.4549 -2.7582 6.7228 11 6 5.2179 -1.9323 7.7262 12 8 5.4038 -0.7511 7.5231 13 7 5.6945 -2.5064 8.8484 14 6 6.4367 -1.7036 9.8236 15 1 6.8910 -0.8161 9.3831 16 6 5.6497 -1.4192 11.1138 17 6 6.2357 -2.7291 11.6666 18 1 5.6294 -3.6077 11.4458 19 6 6.6451 -2.6444 13.1384 20 7 5.4937 -2.9671 13.9849 21 6 5.1404 -4.2101 14.4361 22 6 4.0268 -4.0537 15.1771 23 7 3.7091 -2.7506 15.1786 24 6 4.5832 -2.0936 14.4664 25 6 7.4054 -2.5264 10.6892 26 6 3.0952 -0.6586 3.3223 27 6 2.6387 -0.0111 2.1908 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5880 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 1.1308 -2.6046 0.6460 33 1 1.9491 -3.7685 2.6545 34 1 3.3940 -1.0659 5.9166 35 1 4.9147 -1.4491 5.0746 36 1 5.0906 -3.5646 6.3569 37 1 3.5698 -3.1808 7.1985 38 1 5.5461 -3.4512 9.0106 39 1 4.5682 -1.4466 10.9806 40 1 5.9893 -0.5303 11.6455 41 1 6.9889 -1.6346 13.3623 42 1 7.4494 -3.3537 13.3332 43 1 5.6561 -5.1379 14.2370 44 1 3.4825 -4.8403 15.6786 45 1 4.5795 -1.0279 14.2916 46 1 8.2251 -1.9402 11.1048 47 1 7.7423 -3.4479 10.2143 48 1 3.6438 -0.1109 4.0743 49 1 2.8302 1.0436 2.0584 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:37 Heat of formation + Delta-G solvation = 17.296458 kcal Electronic energy + Delta-G solvation = -29874.363496 eV Core-core repulsion = 25577.633423 eV Total energy + Delta-G solvation = -4296.730073 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.97853 -41.58603 -41.12725 -39.78128 -38.98227 -37.31235 -35.49170 -34.11273 -33.24002 -31.96532 -31.48009 -30.38334 -29.02273 -27.04287 -26.63385 -25.67932 -24.32881 -23.42899 -22.24959 -22.07883 -21.88589 -21.63330 -20.54802 -19.51831 -18.56607 -18.50217 -17.98078 -17.52392 -17.35759 -17.04497 -16.73867 -16.59652 -16.05300 -15.95681 -15.62347 -15.52981 -15.32925 -15.07014 -14.82965 -14.69614 -14.57941 -14.37905 -14.31523 -14.15792 -13.93031 -13.76274 -13.68617 -13.63905 -13.12275 -12.92804 -12.83432 -12.57645 -12.34161 -11.97674 -11.95570 -11.72219 -11.63450 -11.58837 -11.10539 -10.84318 -10.52246 -10.45355 -10.27471 -9.94376 -9.42749 -9.12089 -4.95128 0.37282 0.40519 1.13139 1.30651 1.40391 1.58851 1.60485 1.77992 1.97011 2.31840 2.37811 2.69563 3.07326 3.17783 3.39695 3.40274 3.44113 3.49630 3.76544 3.77310 3.80179 3.83729 3.85136 3.87054 3.93311 3.96426 4.02898 4.18567 4.24458 4.32657 4.36458 4.38708 4.39315 4.45755 4.54805 4.55382 4.57991 4.64210 4.67763 4.74704 4.77977 4.81381 4.86003 5.03366 5.26055 5.30717 5.33088 5.36680 5.59296 5.77726 5.83587 6.21105 6.24562 6.39319 6.47087 6.98143 7.19641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.070 4.070 3 Si 0.680 3.320 4 C -0.111 4.111 5 C -0.053 4.053 6 C -0.150 4.150 7 C 0.137 3.863 8 O -0.316 6.316 9 C 0.074 3.926 10 C -0.142 4.142 11 C 0.524 3.476 12 O -0.534 6.534 13 N -0.713 5.713 14 C 0.121 3.879 15 H 0.108 0.892 16 C -0.147 4.147 17 C -0.129 4.129 18 H 0.097 0.903 19 C 0.113 3.887 20 N -0.457 5.457 21 C -0.059 4.059 22 C -0.029 4.029 23 N -0.496 5.496 24 C 0.183 3.817 25 C -0.136 4.136 26 C -0.202 4.202 27 C -0.074 4.074 28 H 0.379 0.621 29 H 0.075 0.925 30 H -0.261 1.261 31 H -0.256 1.256 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.202 0.798 46 H 0.102 0.898 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -2.946 -1.716 7.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.180 4.180 3 Si 0.582 3.418 4 C -0.112 4.112 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.091 3.909 8 O -0.230 6.230 9 C -0.002 4.002 10 C -0.182 4.182 11 C 0.311 3.689 12 O -0.410 6.410 13 N -0.364 5.364 14 C 0.015 3.985 15 H 0.126 0.874 16 C -0.186 4.186 17 C -0.148 4.148 18 H 0.116 0.884 19 C -0.009 4.009 20 N -0.140 5.140 21 C -0.192 4.192 22 C -0.177 4.177 23 N -0.214 5.214 24 C -0.099 4.099 25 C -0.175 4.175 26 C -0.220 4.220 27 C -0.092 4.092 28 H 0.226 0.774 29 H 0.093 0.907 30 H -0.187 1.187 31 H -0.181 1.181 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.238 0.762 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.190 0.810 44 H 0.186 0.814 45 H 0.218 0.782 46 H 0.120 0.880 47 H 0.099 0.901 48 H 0.153 0.847 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.949 -1.377 -0.923 6.175 hybrid contribution -0.439 -0.887 -0.712 1.219 sum 5.509 -2.264 -1.635 6.177 Atomic orbital electron populations 1.86602 1.17976 1.80094 1.49724 1.24718 0.84303 1.10742 0.98241 0.95093 0.91731 0.74855 0.80168 1.19139 1.01510 0.94278 0.96237 1.20808 0.96325 0.93542 0.96390 1.20474 1.01816 1.00831 0.93767 1.18971 0.94253 0.90940 0.86696 1.85971 1.69139 1.38474 1.29402 1.22416 0.96468 0.93272 0.88043 1.21469 1.02215 0.99625 0.94845 1.20317 0.78796 0.88025 0.81789 1.90762 1.57554 1.16026 1.76662 1.45618 1.56824 1.13235 1.20755 1.21794 0.92830 0.95549 0.88278 0.87360 1.23538 1.01307 0.97202 0.96529 1.23065 0.98858 0.99861 0.93047 0.88440 1.21963 0.86678 1.03495 0.88802 1.45579 1.22550 1.07634 1.38278 1.22747 1.01879 0.89162 1.05406 1.22360 0.97471 0.94111 1.03768 1.70323 1.26081 1.05222 1.19779 1.25007 0.88522 0.97715 0.98681 1.23337 0.96700 1.01328 0.96111 1.21234 1.06507 0.93845 1.00455 1.20784 0.96476 0.99254 0.92637 0.77354 0.90693 1.18661 1.18062 0.85049 0.84832 0.90897 0.90742 0.87335 0.87425 0.76190 0.90652 0.88622 0.88463 0.88731 0.81014 0.81407 0.78181 0.87999 0.90145 0.84745 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.96 12.81 -35.23 -0.45 -1.41 16 2 C -0.07 -0.04 2.79 36.01 0.10 0.06 16 3 Si 0.68 -0.17 29.85 -169.99 -5.07 -5.24 16 4 C -0.11 -0.22 5.38 -104.60 -0.56 -0.78 16 5 C -0.05 -0.10 9.68 -39.61 -0.38 -0.48 16 6 C -0.15 -0.29 9.99 -39.43 -0.39 -0.68 16 7 C 0.14 0.32 6.69 -39.22 -0.26 0.06 16 8 O -0.32 -0.53 10.14 -19.45 -0.20 -0.73 16 9 C 0.07 0.00 4.03 37.16 0.15 0.15 16 10 C -0.14 0.32 6.07 -27.88 -0.17 0.15 16 11 C 0.52 -0.26 7.83 -10.99 -0.09 -0.34 16 12 O -0.53 -1.86 15.58 5.55 0.09 -1.78 16 13 N -0.71 2.09 5.26 -53.02 -0.28 1.81 16 14 C 0.12 -0.35 4.32 -67.12 -0.29 -0.64 16 15 H 0.11 -0.12 7.46 -51.93 -0.39 -0.51 16 16 C -0.15 0.48 7.43 -25.92 -0.19 0.29 16 17 C -0.13 0.59 3.84 -89.81 -0.34 0.25 16 18 H 0.10 -0.37 8.14 -51.92 -0.42 -0.79 16 19 C 0.11 -0.48 5.99 -4.04 -0.02 -0.51 16 20 N -0.46 0.44 2.75 -118.57 -0.33 0.11 16 21 C -0.06 0.01 11.58 -16.56 -0.19 -0.19 16 22 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 23 N -0.50 -2.12 11.25 -14.66 -0.16 -2.28 16 24 C 0.18 0.20 12.56 -90.37 -1.14 -0.94 16 25 C -0.14 0.70 7.39 -25.92 -0.19 0.51 16 26 C -0.20 -0.36 9.04 -39.43 -0.36 -0.72 16 27 C -0.07 -0.12 8.66 -39.61 -0.34 -0.47 16 28 H 0.38 -0.85 8.74 45.56 0.40 -0.45 16 29 H 0.08 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 31 H -0.26 -0.76 7.05 56.52 0.40 -0.36 16 32 H 0.13 0.07 8.06 -52.49 -0.42 -0.35 16 33 H 0.13 0.07 8.06 -52.48 -0.42 -0.36 16 34 H 0.07 0.05 7.61 -51.93 -0.40 -0.35 16 35 H 0.07 0.01 7.63 -51.93 -0.40 -0.39 16 36 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 37 H 0.11 -0.36 8.14 -51.92 -0.42 -0.79 16 38 H 0.40 -2.12 8.70 -40.82 -0.36 -2.48 16 39 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 40 H 0.10 -0.38 7.90 -51.93 -0.41 -0.79 16 41 H 0.10 -0.52 7.84 -51.93 -0.41 -0.93 16 42 H 0.09 -0.49 8.14 -51.93 -0.42 -0.92 16 43 H 0.17 -0.50 8.06 -52.49 -0.42 -0.92 16 44 H 0.17 0.09 8.06 -52.49 -0.42 -0.33 16 45 H 0.20 -0.36 8.06 -52.49 -0.42 -0.79 16 46 H 0.10 -0.61 8.10 -51.93 -0.42 -1.03 16 47 H 0.08 -0.43 8.14 -51.93 -0.42 -0.86 16 48 H 0.13 0.07 6.30 -52.49 -0.33 -0.26 16 49 H 0.13 0.01 4.86 -52.48 -0.26 -0.25 16 LS Contribution 409.18 15.07 6.17 6.17 Total: 0.00 -11.34 409.18 -12.35 -23.70 By element: Atomic # 1 Polarization: -8.56 SS G_CDS: -7.22 Total: -15.78 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.89 Total: -4.56 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -0.77 Total: -0.36 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.56 Total: -3.92 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: -5.07 Total: -5.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -11.34 -12.35 -23.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.991 kcal (2) G-P(sol) polarization free energy of solvation -11.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds