Wall clock time and date at job start Sun Mar 7 2021 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47466 * 2 1 4 4 C 1.50699 * 109.46797 * 120.00205 * 2 1 3 5 5 C 1.38261 * 119.94766 * 65.00214 * 4 2 1 6 6 C 1.38149 * 120.05660 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.94034 * 359.97438 * 6 5 4 8 8 O 1.35908 * 120.05164 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99739 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47552 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99392 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00297 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00204 * 179.97438 * 13 11 10 15 15 H 1.09004 * 112.85022 * 336.20007 * 14 13 11 16 16 C 1.53787 * 113.61134 * 107.50189 * 14 13 11 17 17 C 1.53775 * 87.07791 * 89.12122 * 16 14 13 18 18 H 1.09008 * 113.69116 * 270.86757 * 17 16 14 19 19 C 1.53004 * 113.61580 * 139.98250 * 17 16 14 20 20 N 1.46504 * 109.47059 * 87.49776 * 19 17 16 21 21 C 1.36874 * 126.39529 * 90.00431 * 20 19 17 22 22 C 1.34675 * 106.81768 * 179.97438 * 21 20 19 23 23 N 1.34128 * 108.01655 * 359.97438 * 22 21 20 24 24 C 1.30499 * 109.26095 * 0.02562 * 23 22 21 25 25 C 1.53776 * 113.61740 * 204.99955 * 14 13 11 26 26 C 1.38732 * 119.89227 * 0.27545 * 7 6 5 27 27 C 1.38142 * 119.93961 * 359.47308 * 26 7 6 28 28 H 0.96702 * 114.00054 * 60.00128 * 1 2 3 29 29 H 1.09000 * 109.46812 * 239.99640 * 2 1 3 30 30 H 1.48506 * 109.99624 * 298.68219 * 3 2 1 31 31 H 1.48501 * 109.99845 * 59.99540 * 3 2 1 32 32 H 1.07998 * 119.97438 * 359.96785 * 5 4 2 33 33 H 1.08003 * 120.02627 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47038 * 60.00396 * 9 8 7 35 35 H 1.08994 * 109.47519 * 299.99840 * 9 8 7 36 36 H 1.09002 * 109.47294 * 59.99742 * 10 9 8 37 37 H 1.09008 * 109.47111 * 300.00402 * 10 9 8 38 38 H 0.97001 * 120.00184 * 359.97438 * 13 11 10 39 39 H 1.08997 * 113.61168 * 334.57039 * 16 14 13 40 40 H 1.09006 * 113.61290 * 203.66744 * 16 14 13 41 41 H 1.09001 * 109.46601 * 327.50372 * 19 17 16 42 42 H 1.08996 * 109.47508 * 207.50254 * 19 17 16 43 43 H 1.07999 * 126.59416 * 0.02562 * 21 20 19 44 44 H 1.08002 * 125.98988 * 179.73289 * 22 21 20 45 45 H 1.08000 * 125.64975 * 180.02562 * 24 23 22 46 46 H 1.09002 * 113.61516 * 156.33821 * 25 14 13 47 47 H 1.09003 * 113.69069 * 25.44725 * 25 14 13 48 48 H 1.07998 * 120.02802 * 179.72236 * 26 7 6 49 49 H 1.08005 * 119.96777 * 180.22570 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6840 -2.0605 1.3972 6 6 2.1429 -2.7139 2.5246 7 6 2.8529 -2.0144 3.4895 8 8 3.3059 -2.6551 4.5992 9 6 4.0298 -1.8719 5.5503 10 6 4.4549 -2.7582 6.7228 11 6 5.2179 -1.9323 7.7262 12 8 5.4038 -0.7511 7.5231 13 7 5.6945 -2.5064 8.8484 14 6 6.4367 -1.7036 9.8236 15 1 6.8910 -0.8161 9.3831 16 6 5.6497 -1.4192 11.1138 17 6 6.2357 -2.7291 11.6666 18 1 5.6294 -3.6077 11.4458 19 6 6.6451 -2.6444 13.1384 20 7 5.4937 -2.9671 13.9849 21 6 5.1404 -4.2101 14.4361 22 6 4.0268 -4.0537 15.1771 23 7 3.7091 -2.7506 15.1786 24 6 4.5832 -2.0936 14.4664 25 6 7.4054 -2.5264 10.6892 26 6 3.0952 -0.6586 3.3223 27 6 2.6387 -0.0111 2.1908 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5880 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 1.1308 -2.6046 0.6460 33 1 1.9491 -3.7685 2.6545 34 1 3.3940 -1.0659 5.9166 35 1 4.9147 -1.4491 5.0746 36 1 5.0906 -3.5646 6.3569 37 1 3.5698 -3.1808 7.1985 38 1 5.5461 -3.4512 9.0106 39 1 4.5682 -1.4466 10.9806 40 1 5.9893 -0.5303 11.6455 41 1 6.9889 -1.6346 13.3623 42 1 7.4494 -3.3537 13.3332 43 1 5.6561 -5.1379 14.2370 44 1 3.4825 -4.8403 15.6786 45 1 4.5795 -1.0279 14.2916 46 1 8.2251 -1.9402 11.1048 47 1 7.7423 -3.4479 10.2143 48 1 3.6438 -0.1109 4.0743 49 1 2.8302 1.0436 2.0584 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:36 Heat of formation + Delta-G solvation = 17.797528 kcal Electronic energy + Delta-G solvation = -29874.341768 eV Core-core repulsion = 25577.633423 eV Total energy + Delta-G solvation = -4296.708345 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.94352 -41.52075 -41.13228 -39.67363 -39.03182 -37.38471 -35.38881 -34.05566 -33.20034 -32.04450 -31.53401 -30.37924 -28.84815 -26.74528 -26.62920 -25.68122 -24.19589 -23.43503 -22.25505 -22.13240 -21.81414 -21.56512 -20.30124 -19.56368 -18.55850 -18.45452 -17.92285 -17.50755 -17.27447 -16.97777 -16.79463 -16.47824 -16.02523 -15.81780 -15.67479 -15.50753 -15.26006 -14.98372 -14.81401 -14.70316 -14.55980 -14.35520 -14.27635 -14.13917 -13.97697 -13.71241 -13.58880 -13.41539 -12.98936 -12.82529 -12.76773 -12.44836 -12.32711 -12.03128 -11.76377 -11.72145 -11.70132 -11.35128 -11.11055 -10.89790 -10.48850 -10.47384 -10.12659 -10.05483 -9.43632 -9.23253 -4.95374 0.25502 0.29080 1.16657 1.28863 1.46602 1.56523 1.66781 1.91978 1.93942 2.23913 2.44826 2.59789 3.39188 3.41137 3.49050 3.52938 3.70257 3.75993 3.78575 3.80813 3.87929 3.89208 3.89982 4.00951 4.09271 4.13196 4.23609 4.27181 4.30731 4.39051 4.45998 4.52503 4.61862 4.64002 4.65446 4.70978 4.75589 4.76538 4.79911 4.84904 4.95256 4.98808 5.01861 5.15885 5.16722 5.26090 5.36520 5.48627 5.55375 5.69261 5.84361 6.29301 6.32542 6.41249 6.59466 7.11462 7.17574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.078 4.078 3 Si 0.756 3.244 4 C -0.124 4.124 5 C -0.060 4.060 6 C -0.158 4.158 7 C 0.123 3.877 8 O -0.320 6.320 9 C 0.072 3.928 10 C -0.133 4.133 11 C 0.522 3.478 12 O -0.581 6.581 13 N -0.700 5.700 14 C 0.109 3.891 15 H 0.087 0.913 16 C -0.148 4.148 17 C -0.116 4.116 18 H 0.094 0.906 19 C 0.109 3.891 20 N -0.451 5.451 21 C -0.047 4.047 22 C -0.068 4.068 23 N -0.548 5.548 24 C 0.173 3.827 25 C -0.118 4.118 26 C -0.209 4.209 27 C -0.083 4.083 28 H 0.394 0.606 29 H 0.098 0.902 30 H -0.283 1.283 31 H -0.303 1.303 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.202 0.798 44 H 0.171 0.829 45 H 0.220 0.780 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.041 -4.225 -2.118 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.186 4.186 3 Si 0.662 3.338 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.176 4.176 7 C 0.077 3.923 8 O -0.234 6.234 9 C -0.003 4.003 10 C -0.172 4.172 11 C 0.310 3.690 12 O -0.461 6.461 13 N -0.352 5.352 14 C 0.004 3.996 15 H 0.105 0.895 16 C -0.187 4.187 17 C -0.135 4.135 18 H 0.112 0.888 19 C -0.012 4.012 20 N -0.133 5.133 21 C -0.180 4.180 22 C -0.215 4.215 23 N -0.267 5.267 24 C -0.109 4.109 25 C -0.156 4.156 26 C -0.228 4.228 27 C -0.101 4.101 28 H 0.245 0.755 29 H 0.116 0.884 30 H -0.210 1.210 31 H -0.231 1.231 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.219 0.781 44 H 0.188 0.812 45 H 0.237 0.763 46 H 0.134 0.866 47 H 0.109 0.891 48 H 0.158 0.842 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.515 -2.704 -1.333 8.097 hybrid contribution -0.941 -0.452 -0.575 1.191 sum 6.574 -3.156 -1.908 7.538 Atomic orbital electron populations 1.86553 1.18674 1.80600 1.51075 1.24884 0.83889 1.11351 0.98524 0.94226 0.90556 0.72749 0.76270 1.19404 1.01549 0.94634 0.96848 1.21014 0.96373 0.93704 0.96683 1.20683 1.01690 1.01486 0.93755 1.19167 0.94700 0.91268 0.87144 1.85955 1.69287 1.38741 1.29410 1.22458 0.95878 0.93572 0.88437 1.21438 1.02943 0.99258 0.93608 1.20618 0.78488 0.87512 0.82431 1.90744 1.59544 1.18032 1.77777 1.45548 1.55796 1.13892 1.19943 1.21888 0.93796 0.95662 0.88293 0.89468 1.23555 0.99894 0.98559 0.96704 1.22927 0.98838 0.98676 0.93077 0.88811 1.22244 0.85845 1.05008 0.88068 1.45753 1.22734 1.06983 1.37807 1.23158 1.00828 0.90331 1.03712 1.22637 0.99215 0.93898 1.05706 1.70239 1.28157 1.06507 1.21785 1.25362 0.88517 0.98692 0.98359 1.23272 0.96261 1.01359 0.94723 1.21384 1.06657 0.93992 1.00768 1.20977 0.96598 0.99836 0.92681 0.75531 0.88438 1.21022 1.23135 0.83905 0.83722 0.92075 0.91163 0.85170 0.85960 0.74586 0.92856 0.87868 0.87014 0.86787 0.78091 0.81161 0.76333 0.86581 0.89094 0.84184 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.93 12.81 -148.98 -1.91 -3.84 16 2 C -0.08 -0.06 2.79 71.24 0.20 0.14 16 3 Si 0.76 -0.18 29.85 68.60 2.05 1.86 16 4 C -0.12 -0.53 5.38 -19.85 -0.11 -0.63 16 5 C -0.06 -0.23 9.68 22.25 0.22 -0.01 16 6 C -0.16 -0.67 9.99 22.37 0.22 -0.45 16 7 C 0.12 0.68 6.69 22.51 0.15 0.83 16 8 O -0.32 -1.26 10.14 -92.52 -0.94 -2.19 16 9 C 0.07 0.08 4.03 71.98 0.29 0.37 16 10 C -0.13 0.61 6.07 29.85 0.18 0.80 16 11 C 0.52 -0.21 7.83 87.66 0.69 0.48 16 12 O -0.58 -5.06 15.58 -3.06 -0.05 -5.11 16 13 N -0.70 4.26 5.26 -440.04 -2.32 1.95 16 14 C 0.11 -0.65 4.32 45.52 0.20 -0.46 16 15 H 0.09 -0.11 7.46 -2.39 -0.02 -0.13 16 16 C -0.15 0.99 7.43 31.12 0.23 1.22 16 17 C -0.12 1.24 3.84 -10.27 -0.04 1.20 16 18 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 19 C 0.11 -1.17 5.99 86.38 0.52 -0.65 16 20 N -0.45 1.31 2.75 -529.05 -1.46 -0.15 16 21 C -0.05 0.05 11.58 83.09 0.96 1.01 16 22 C -0.07 -0.37 11.87 83.52 0.99 0.62 16 23 N -0.55 -5.39 11.25 -200.30 -2.25 -7.64 16 24 C 0.17 0.42 12.56 180.26 2.26 2.69 16 25 C -0.12 1.44 7.39 31.12 0.23 1.67 16 26 C -0.21 -1.01 9.04 22.37 0.20 -0.81 16 27 C -0.08 -0.35 8.66 22.25 0.19 -0.16 16 28 H 0.39 -1.88 8.74 -74.06 -0.65 -2.53 16 29 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H -0.28 -0.93 7.11 99.48 0.71 -0.23 16 31 H -0.30 -2.30 7.05 99.48 0.70 -1.60 16 32 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 33 H 0.14 0.16 8.06 -2.91 -0.02 0.13 16 34 H 0.06 0.19 7.61 -2.39 -0.02 0.18 16 35 H 0.07 0.12 7.63 -2.39 -0.02 0.10 16 36 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H 0.12 -0.91 8.14 -2.38 -0.02 -0.93 16 38 H 0.42 -4.86 8.70 -92.71 -0.81 -5.66 16 39 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.10 -0.85 7.90 -2.38 -0.02 -0.87 16 41 H 0.11 -1.46 7.84 -2.39 -0.02 -1.48 16 42 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 43 H 0.20 -1.60 8.06 -2.91 -0.02 -1.62 16 44 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.22 -0.75 8.06 -2.91 -0.02 -0.77 16 46 H 0.12 -1.68 8.10 -2.39 -0.02 -1.70 16 47 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 48 H 0.14 0.39 6.30 -2.91 -0.02 0.37 16 49 H 0.14 0.15 4.86 -2.91 -0.01 0.14 16 Total: 0.00 -29.02 409.18 0.27 -28.74 By element: Atomic # 1 Polarization: -21.02 SS G_CDS: -0.44 Total: -21.47 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 7.59 Total: 7.85 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -6.02 Total: -5.84 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -2.89 Total: -11.14 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.05 Total: 1.86 kcal Total: -29.02 0.27 -28.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.538 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds