Wall clock time and date at job start Sun Mar 7 2021 00:04:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42902 * 1
3 3 Si 1.86302 * 109.46987 * 2 1
4 4 C 1.50696 * 109.47218 * 240.00021 * 2 1 3
5 5 C 1.38240 * 119.97662 * 119.99666 * 4 2 1
6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2
7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4
8 8 C 1.38757 * 119.94413 * 359.50981 * 7 6 5
9 9 O 1.35896 * 120.05426 * 180.21111 * 8 7 6
10 10 C 1.42901 * 117.00083 * 0.29963 * 9 8 7
11 11 C 1.53007 * 109.47274 * 180.02562 * 10 9 8
12 12 C 1.50689 * 109.47307 * 179.97438 * 11 10 9
13 13 O 1.21283 * 120.00182 * 0.02562 * 12 11 10
14 14 N 1.34780 * 120.00235 * 179.97438 * 12 11 10
15 15 C 1.46498 * 119.99997 * 179.97438 * 14 12 11
16 16 H 1.08998 * 112.85648 * 336.20292 * 15 14 12
17 17 C 1.53784 * 113.61157 * 107.51269 * 15 14 12
18 18 C 1.53775 * 87.08516 * 89.11193 * 17 15 14
19 19 H 1.09000 * 113.61801 * 270.88549 * 18 17 15
20 20 C 1.52999 * 113.68952 * 139.99166 * 18 17 15
21 21 N 1.46504 * 109.47202 * 87.46602 * 20 18 17
22 22 C 1.36880 * 126.39493 * 89.99945 * 21 20 18
23 23 C 1.34666 * 106.81563 * 180.02562 * 22 21 20
24 24 N 1.34130 * 108.02319 * 359.97438 * 23 22 21
25 25 C 1.30505 * 109.25007 * 359.72563 * 24 23 22
26 26 C 1.53783 * 87.07971 * 25.43396 * 18 17 15
27 27 C 1.38171 * 119.97135 * 300.02344 * 4 2 1
28 28 H 0.96707 * 114.00013 * 299.99933 * 1 2 3
29 29 H 1.09004 * 109.46929 * 119.99805 * 2 1 3
30 30 H 1.48496 * 110.00067 * 300.00156 * 3 2 1
31 31 H 1.48503 * 109.99859 * 61.32160 * 3 2 1
32 32 H 1.08006 * 119.93931 * 0.02562 * 5 4 2
33 33 H 1.08002 * 119.96980 * 179.97438 * 6 5 4
34 34 H 1.07998 * 120.02956 * 179.72220 * 7 6 5
35 35 H 1.09000 * 109.47190 * 299.99904 * 10 9 8
36 36 H 1.09000 * 109.47473 * 60.00460 * 10 9 8
37 37 H 1.09000 * 109.46703 * 299.99919 * 11 10 9
38 38 H 1.08998 * 109.47110 * 59.99057 * 11 10 9
39 39 H 0.97003 * 119.99793 * 0.02562 * 14 12 11
40 40 H 1.08997 * 113.61438 * 203.66738 * 17 15 14
41 41 H 1.09007 * 113.61111 * 334.56134 * 17 15 14
42 42 H 1.09005 * 109.46933 * 207.46350 * 20 18 17
43 43 H 1.08996 * 109.47111 * 327.46511 * 20 18 17
44 44 H 1.07997 * 126.59540 * 0.03263 * 22 21 20
45 45 H 1.08003 * 125.99296 * 179.97438 * 23 22 21
46 46 H 1.08001 * 125.64414 * 180.29187 * 25 24 23
47 47 H 1.09002 * 113.61349 * 220.01672 * 26 18 17
48 48 H 1.08998 * 113.69269 * 89.13193 * 26 18 17
49 49 H 1.07997 * 120.02764 * 0.02562 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9314 -0.7104 -1.2304
5 6 2.7260 -0.0381 -2.1401
6 6 3.1882 -0.6870 -3.2704
7 6 2.8525 -2.0077 -3.4957
8 6 2.0593 -2.6863 -2.5816
9 8 1.7312 -3.9871 -2.7989
10 6 2.2431 -4.5957 -3.9862
11 6 1.7711 -6.0493 -4.0584
12 6 2.3103 -6.6909 -5.3108
13 8 3.0043 -6.0490 -6.0705
14 7 2.0223 -7.9785 -5.5861
15 6 2.5461 -8.6020 -6.8038
16 1 2.7830 -7.8770 -7.5825
17 6 3.6715 -9.6167 -6.5413
18 6 2.5717 -10.6827 -6.4046
19 1 2.1889 -10.7875 -5.3894
20 6 2.9332 -12.0244 -7.0448
21 7 3.6571 -12.8493 -6.0743
22 6 3.1042 -13.7311 -5.1853
23 6 4.1220 -14.2712 -4.4882
24 7 5.2652 -13.7342 -4.9396
25 6 4.9949 -12.8862 -5.8940
26 6 1.7014 -9.7867 -7.3017
27 6 1.5968 -2.0331 -1.4487
28 1 -0.3933 0.4417 0.7651
29 1 1.7923 -0.5138 0.8900
30 1 1.5614 2.4679 -1.2084
31 1 1.5879 2.4585 1.2243
32 1 2.9864 0.9959 -1.9676
33 1 3.8085 -0.1593 -3.9798
34 1 3.2099 -2.5128 -4.3809
35 1 1.8799 -4.0524 -4.8586
36 1 3.3326 -4.5676 -3.9682
37 1 2.1339 -6.5929 -3.1861
38 1 0.6816 -6.0771 -4.0764
39 1 1.4676 -8.4921 -4.9782
40 1 4.3272 -9.7729 -7.3979
41 1 4.2184 -9.4325 -5.6165
42 1 2.0218 -12.5385 -7.3503
43 1 3.5634 -11.8526 -7.9173
44 1 2.0537 -13.9515 -5.0659
45 1 4.0333 -15.0076 -3.7032
46 1 5.7207 -12.3075 -6.4460
47 1 0.6577 -9.7399 -6.9909
48 1 1.8172 -9.9887 -8.3665
49 1 0.9753 -2.5577 -0.7383
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_14688108_4549614.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 00:04:35
Heat of formation + Delta-G solvation = 17.180980 kcal
Electronic energy + Delta-G solvation = -29913.028941 eV
Core-core repulsion = 25616.293861 eV
Total energy + Delta-G solvation = -4296.735081 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 358.173 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.97836 -41.58236 -41.12376 -39.77947 -38.94592 -37.39287 -35.48999 -34.10701
-33.14134 -32.52670 -30.80069 -30.37562 -29.00063 -27.05527 -27.00096 -25.68130
-24.14275 -23.57863 -22.27841 -22.12361 -21.87571 -21.50139 -20.54384 -19.20271
-18.56024 -18.50484 -17.96244 -17.51469 -17.35605 -17.13434 -16.93480 -16.60093
-16.05875 -15.94415 -15.75355 -15.61779 -15.35506 -15.06226 -14.82707 -14.65276
-14.48785 -14.42708 -14.28593 -14.15259 -13.90940 -13.75806 -13.68303 -13.41977
-13.10985 -12.95992 -12.90168 -12.58259 -12.31992 -11.95532 -11.93803 -11.79493
-11.63270 -11.61639 -11.10402 -10.84383 -10.54835 -10.52192 -10.27271 -9.81241
-9.42789 -9.16869 -4.94835 0.29042 0.49324 1.13204 1.27190 1.40628
1.58758 1.62146 1.77961 1.96734 2.31805 2.38862 2.70511 3.07399
3.17907 3.33624 3.40237 3.44227 3.49857 3.73208 3.76799 3.80459
3.83730 3.87638 3.91926 3.93585 3.96455 4.12091 4.18664 4.25453
4.25955 4.31723 4.38840 4.39463 4.46823 4.55326 4.55533 4.58015
4.63388 4.67640 4.73260 4.74838 4.81443 4.86271 5.05047 5.30802
5.33155 5.33395 5.45637 5.54262 5.74322 5.83560 6.21356 6.24584
6.42383 6.43453 6.98365 7.19563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.535 6.535
2 C -0.078 4.078
3 Si 0.686 3.314
4 C -0.036 4.036
5 C -0.152 4.152
6 C -0.073 4.073
7 C -0.203 4.203
8 C 0.132 3.868
9 O -0.316 6.316
10 C 0.075 3.925
11 C -0.142 4.142
12 C 0.524 3.476
13 O -0.534 6.534
14 N -0.713 5.713
15 C 0.121 3.879
16 H 0.108 0.892
17 C -0.147 4.147
18 C -0.129 4.129
19 H 0.097 0.903
20 C 0.113 3.887
21 N -0.457 5.457
22 C -0.059 4.059
23 C -0.029 4.029
24 N -0.496 5.496
25 C 0.183 3.817
26 C -0.136 4.136
27 C -0.124 4.124
28 H 0.380 0.620
29 H 0.079 0.921
30 H -0.255 1.255
31 H -0.261 1.261
32 H 0.129 0.871
33 H 0.132 0.868
34 H 0.133 0.867
35 H 0.073 0.927
36 H 0.073 0.927
37 H 0.108 0.892
38 H 0.108 0.892
39 H 0.403 0.597
40 H 0.095 0.905
41 H 0.075 0.925
42 H 0.094 0.906
43 H 0.097 0.903
44 H 0.173 0.827
45 H 0.169 0.831
46 H 0.202 0.798
47 H 0.080 0.920
48 H 0.102 0.898
49 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.045 -0.732 -0.842 2.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.342 6.342
2 C -0.187 4.187
3 Si 0.587 3.413
4 C -0.036 4.036
5 C -0.170 4.170
6 C -0.091 4.091
7 C -0.221 4.221
8 C 0.086 3.914
9 O -0.230 6.230
10 C -0.001 4.001
11 C -0.182 4.182
12 C 0.311 3.689
13 O -0.410 6.410
14 N -0.364 5.364
15 C 0.015 3.985
16 H 0.126 0.874
17 C -0.185 4.185
18 C -0.148 4.148
19 H 0.116 0.884
20 C -0.009 4.009
21 N -0.140 5.140
22 C -0.192 4.192
23 C -0.177 4.177
24 N -0.214 5.214
25 C -0.099 4.099
26 C -0.175 4.175
27 C -0.142 4.142
28 H 0.228 0.772
29 H 0.097 0.903
30 H -0.179 1.179
31 H -0.186 1.186
32 H 0.146 0.854
33 H 0.150 0.850
34 H 0.150 0.850
35 H 0.091 0.909
36 H 0.092 0.908
37 H 0.126 0.874
38 H 0.126 0.874
39 H 0.238 0.762
40 H 0.114 0.886
41 H 0.094 0.906
42 H 0.113 0.887
43 H 0.115 0.885
44 H 0.190 0.810
45 H 0.186 0.814
46 H 0.218 0.782
47 H 0.098 0.902
48 H 0.120 0.880
49 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -1.070 0.025 -1.647 1.964
hybrid contribution -2.169 -0.360 0.365 2.229
sum -3.239 -0.335 -1.282 3.499
Atomic orbital electron populations
1.86597 1.17668 1.80217 1.49762 1.24840 0.84587 1.11113 0.98153
0.94955 0.91761 0.74332 0.80252 1.19012 0.96678 0.93025 0.94923
1.20862 1.01080 0.99812 0.95218 1.20898 0.97902 0.93710 0.96551
1.21379 1.03224 0.96531 1.00987 1.18917 0.94790 0.83144 0.94507
1.85966 1.71185 1.22843 1.43045 1.22403 0.99368 0.91940 0.86389
1.21467 1.03946 0.95575 0.97176 1.20316 0.80003 0.81583 0.86997
1.90759 1.37718 1.62628 1.49920 1.45622 1.53771 1.12137 1.24909
1.21794 0.94604 0.94325 0.87746 0.87376 1.23534 0.96621 0.95007
1.03377 1.23059 0.98392 0.92870 1.00491 0.88446 1.21960 0.97856
0.90490 0.90623 1.45577 1.07796 1.31832 1.28833 1.22746 1.00408
0.98663 0.97383 1.22358 0.88025 1.03960 1.03362 1.70330 1.29093
1.10862 1.11118 1.25008 0.83383 1.01743 0.99789 1.23340 0.99229
0.94187 1.00743 1.20202 1.02764 0.94087 0.97197 0.77188 0.90338
1.17930 1.18644 0.85367 0.85030 0.84953 0.90916 0.90840 0.87381
0.87386 0.76188 0.88622 0.90640 0.88738 0.88456 0.81023 0.81408
0.78175 0.90166 0.87989 0.84977
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.54 -0.92 12.74 -35.23 -0.45 -1.37 16
2 C -0.08 -0.04 2.81 36.00 0.10 0.06 16
3 Si 0.69 -0.37 29.79 -169.99 -5.06 -5.43 16
4 C -0.04 -0.08 5.42 -104.65 -0.57 -0.65 16
5 C -0.15 -0.19 8.67 -39.56 -0.34 -0.53 16
6 C -0.07 -0.07 10.04 -39.61 -0.40 -0.47 16
7 C -0.20 -0.37 9.04 -39.43 -0.36 -0.73 16
8 C 0.13 0.38 6.69 -39.22 -0.26 0.12 16
9 O -0.32 -0.72 10.14 -19.41 -0.20 -0.91 16
10 C 0.07 0.03 4.03 37.16 0.15 0.18 16
11 C -0.14 0.27 6.07 -27.88 -0.17 0.10 16
12 C 0.52 -0.14 7.83 -10.99 -0.09 -0.22 16
13 O -0.53 -1.98 15.58 5.55 0.09 -1.89 16
14 N -0.71 1.95 5.26 -53.02 -0.28 1.67 16
15 C 0.12 -0.33 4.32 -67.12 -0.29 -0.63 16
16 H 0.11 -0.10 7.47 -51.93 -0.39 -0.49 16
17 C -0.15 0.47 7.43 -25.92 -0.19 0.28 16
18 C -0.13 0.58 3.84 -89.81 -0.34 0.23 16
19 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16
20 C 0.11 -0.48 5.99 -4.04 -0.02 -0.50 16
21 N -0.46 0.44 2.75 -118.58 -0.33 0.11 16
22 C -0.06 0.01 11.58 -16.56 -0.19 -0.19 16
23 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16
24 N -0.50 -2.09 11.25 -14.67 -0.17 -2.25 16
25 C 0.18 0.19 12.56 -90.38 -1.14 -0.95 16
26 C -0.14 0.68 7.39 -25.92 -0.19 0.49 16
27 C -0.12 -0.37 9.55 -39.43 -0.38 -0.75 16
28 H 0.38 -0.92 8.74 45.56 0.40 -0.52 16
29 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16
30 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16
31 H -0.26 -0.34 7.11 56.52 0.40 0.06 16
32 H 0.13 -0.09 4.87 -52.48 -0.26 -0.35 16
33 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16
34 H 0.13 0.09 6.30 -52.49 -0.33 -0.25 16
35 H 0.07 0.06 7.61 -51.93 -0.39 -0.34 16
36 H 0.07 0.05 7.63 -51.93 -0.40 -0.35 16
37 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16
38 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16
39 H 0.40 -2.04 8.70 -40.82 -0.36 -2.40 16
40 H 0.10 -0.38 7.90 -51.93 -0.41 -0.79 16
41 H 0.07 -0.10 8.14 -51.92 -0.42 -0.53 16
42 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16
43 H 0.10 -0.52 7.85 -51.93 -0.41 -0.93 16
44 H 0.17 -0.49 8.06 -52.49 -0.42 -0.91 16
45 H 0.17 0.09 8.06 -52.48 -0.42 -0.33 16
46 H 0.20 -0.38 8.06 -52.49 -0.42 -0.80 16
47 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16
48 H 0.10 -0.59 8.10 -51.93 -0.42 -1.01 16
49 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16
LS Contribution 409.13 15.07 6.17 6.17
Total: 0.00 -11.45 409.13 -12.34 -23.79
By element:
Atomic # 1 Polarization: -8.24 SS G_CDS: -7.22 Total: -15.46 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: -4.89 Total: -4.42 kcal
Atomic # 7 Polarization: 0.30 SS G_CDS: -0.77 Total: -0.47 kcal
Atomic # 8 Polarization: -3.61 SS G_CDS: -0.56 Total: -4.17 kcal
Atomic # 14 Polarization: -0.37 SS G_CDS: -5.06 Total: -5.43 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -11.45 -12.34 -23.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14688108_4549614.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal
(2) G-P(sol) polarization free energy of solvation -11.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.520 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds