Wall clock time and date at job start Sun Mar 7 2021 00:04:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42902 * 1
3 3 Si 1.86302 * 109.46987 * 2 1
4 4 C 1.50696 * 109.47218 * 240.00021 * 2 1 3
5 5 C 1.38240 * 119.97662 * 119.99666 * 4 2 1
6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2
7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4
8 8 C 1.38757 * 119.94413 * 359.50981 * 7 6 5
9 9 O 1.35896 * 120.05426 * 180.21111 * 8 7 6
10 10 C 1.42901 * 117.00083 * 0.29963 * 9 8 7
11 11 C 1.53007 * 109.47274 * 180.02562 * 10 9 8
12 12 C 1.50689 * 109.47307 * 179.97438 * 11 10 9
13 13 O 1.21283 * 120.00182 * 0.02562 * 12 11 10
14 14 N 1.34780 * 120.00235 * 179.97438 * 12 11 10
15 15 C 1.46498 * 119.99997 * 179.97438 * 14 12 11
16 16 H 1.08998 * 112.85648 * 336.20292 * 15 14 12
17 17 C 1.53784 * 113.61157 * 107.51269 * 15 14 12
18 18 C 1.53775 * 87.08516 * 89.11193 * 17 15 14
19 19 H 1.09000 * 113.61801 * 270.88549 * 18 17 15
20 20 C 1.52999 * 113.68952 * 139.99166 * 18 17 15
21 21 N 1.46504 * 109.47202 * 87.46602 * 20 18 17
22 22 C 1.36880 * 126.39493 * 89.99945 * 21 20 18
23 23 C 1.34666 * 106.81563 * 180.02562 * 22 21 20
24 24 N 1.34130 * 108.02319 * 359.97438 * 23 22 21
25 25 C 1.30505 * 109.25007 * 359.72563 * 24 23 22
26 26 C 1.53783 * 87.07971 * 25.43396 * 18 17 15
27 27 C 1.38171 * 119.97135 * 300.02344 * 4 2 1
28 28 H 0.96707 * 114.00013 * 299.99933 * 1 2 3
29 29 H 1.09004 * 109.46929 * 119.99805 * 2 1 3
30 30 H 1.48496 * 110.00067 * 300.00156 * 3 2 1
31 31 H 1.48503 * 109.99859 * 61.32160 * 3 2 1
32 32 H 1.08006 * 119.93931 * 0.02562 * 5 4 2
33 33 H 1.08002 * 119.96980 * 179.97438 * 6 5 4
34 34 H 1.07998 * 120.02956 * 179.72220 * 7 6 5
35 35 H 1.09000 * 109.47190 * 299.99904 * 10 9 8
36 36 H 1.09000 * 109.47473 * 60.00460 * 10 9 8
37 37 H 1.09000 * 109.46703 * 299.99919 * 11 10 9
38 38 H 1.08998 * 109.47110 * 59.99057 * 11 10 9
39 39 H 0.97003 * 119.99793 * 0.02562 * 14 12 11
40 40 H 1.08997 * 113.61438 * 203.66738 * 17 15 14
41 41 H 1.09007 * 113.61111 * 334.56134 * 17 15 14
42 42 H 1.09005 * 109.46933 * 207.46350 * 20 18 17
43 43 H 1.08996 * 109.47111 * 327.46511 * 20 18 17
44 44 H 1.07997 * 126.59540 * 0.03263 * 22 21 20
45 45 H 1.08003 * 125.99296 * 179.97438 * 23 22 21
46 46 H 1.08001 * 125.64414 * 180.29187 * 25 24 23
47 47 H 1.09002 * 113.61349 * 220.01672 * 26 18 17
48 48 H 1.08998 * 113.69269 * 89.13193 * 26 18 17
49 49 H 1.07997 * 120.02764 * 0.02562 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9314 -0.7104 -1.2304
5 6 2.7260 -0.0381 -2.1401
6 6 3.1882 -0.6870 -3.2704
7 6 2.8525 -2.0077 -3.4957
8 6 2.0593 -2.6863 -2.5816
9 8 1.7312 -3.9871 -2.7989
10 6 2.2431 -4.5957 -3.9862
11 6 1.7711 -6.0493 -4.0584
12 6 2.3103 -6.6909 -5.3108
13 8 3.0043 -6.0490 -6.0705
14 7 2.0223 -7.9785 -5.5861
15 6 2.5461 -8.6020 -6.8038
16 1 2.7830 -7.8770 -7.5825
17 6 3.6715 -9.6167 -6.5413
18 6 2.5717 -10.6827 -6.4046
19 1 2.1889 -10.7875 -5.3894
20 6 2.9332 -12.0244 -7.0448
21 7 3.6571 -12.8493 -6.0743
22 6 3.1042 -13.7311 -5.1853
23 6 4.1220 -14.2712 -4.4882
24 7 5.2652 -13.7342 -4.9396
25 6 4.9949 -12.8862 -5.8940
26 6 1.7014 -9.7867 -7.3017
27 6 1.5968 -2.0331 -1.4487
28 1 -0.3933 0.4417 0.7651
29 1 1.7923 -0.5138 0.8900
30 1 1.5614 2.4679 -1.2084
31 1 1.5879 2.4585 1.2243
32 1 2.9864 0.9959 -1.9676
33 1 3.8085 -0.1593 -3.9798
34 1 3.2099 -2.5128 -4.3809
35 1 1.8799 -4.0524 -4.8586
36 1 3.3326 -4.5676 -3.9682
37 1 2.1339 -6.5929 -3.1861
38 1 0.6816 -6.0771 -4.0764
39 1 1.4676 -8.4921 -4.9782
40 1 4.3272 -9.7729 -7.3979
41 1 4.2184 -9.4325 -5.6165
42 1 2.0218 -12.5385 -7.3503
43 1 3.5634 -11.8526 -7.9173
44 1 2.0537 -13.9515 -5.0659
45 1 4.0333 -15.0076 -3.7032
46 1 5.7207 -12.3075 -6.4460
47 1 0.6577 -9.7399 -6.9909
48 1 1.8172 -9.9887 -8.3665
49 1 0.9753 -2.5577 -0.7383
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_14688108_4549614.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 00:04:34
Heat of formation + Delta-G solvation = 17.471888 kcal
Electronic energy + Delta-G solvation = -29913.016327 eV
Core-core repulsion = 25616.293861 eV
Total energy + Delta-G solvation = -4296.722466 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 358.173 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-42.94226 -41.53504 -41.14479 -39.68317 -39.01032 -37.46482 -35.39509 -34.06134
-33.10207 -32.61834 -30.87465 -30.37210 -28.83238 -27.06992 -26.72555 -25.65062
-23.97241 -23.67882 -22.27042 -22.13749 -21.80877 -21.48734 -20.30850 -19.24574
-18.58478 -18.43461 -17.93283 -17.52712 -17.32080 -17.14006 -16.90789 -16.48447
-16.04940 -15.87722 -15.75156 -15.58741 -15.26460 -14.97333 -14.81733 -14.62802
-14.55284 -14.38959 -14.25792 -14.12759 -13.95136 -13.62038 -13.45760 -13.42116
-12.99884 -12.95325 -12.77707 -12.38627 -12.32827 -12.03755 -11.84738 -11.73095
-11.70072 -11.35732 -11.13015 -10.89687 -10.58304 -10.47487 -10.13927 -9.91861
-9.43533 -9.29695 -4.91820 0.17419 0.36922 1.16834 1.27533 1.44538
1.60302 1.66240 1.93825 1.95057 2.24179 2.43387 2.60661 3.34882
3.38478 3.48249 3.50956 3.68972 3.74169 3.77526 3.82322 3.86127
3.89560 3.94858 4.08543 4.08936 4.13075 4.21191 4.24014 4.26633
4.31790 4.46289 4.51840 4.59560 4.61943 4.62771 4.69811 4.73142
4.75719 4.79970 4.83952 4.95674 4.98253 5.00984 5.15246 5.22525
5.35475 5.36552 5.43226 5.54197 5.66939 5.84431 6.29571 6.32714
6.39480 6.57148 7.09411 7.17720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.559 6.559
2 C -0.090 4.090
3 Si 0.772 3.228
4 C -0.048 4.048
5 C -0.159 4.159
6 C -0.075 4.075
7 C -0.212 4.212
8 C 0.116 3.884
9 O -0.324 6.324
10 C 0.074 3.926
11 C -0.134 4.134
12 C 0.523 3.477
13 O -0.581 6.581
14 N -0.700 5.700
15 C 0.109 3.891
16 H 0.087 0.913
17 C -0.147 4.147
18 C -0.116 4.116
19 H 0.093 0.907
20 C 0.110 3.890
21 N -0.451 5.451
22 C -0.047 4.047
23 C -0.067 4.067
24 N -0.547 5.547
25 C 0.174 3.826
26 C -0.119 4.119
27 C -0.142 4.142
28 H 0.396 0.604
29 H 0.097 0.903
30 H -0.298 1.298
31 H -0.284 1.284
32 H 0.147 0.853
33 H 0.155 0.845
34 H 0.139 0.861
35 H 0.065 0.935
36 H 0.066 0.934
37 H 0.124 0.876
38 H 0.126 0.874
39 H 0.417 0.583
40 H 0.104 0.896
41 H 0.054 0.946
42 H 0.113 0.887
43 H 0.112 0.888
44 H 0.202 0.798
45 H 0.171 0.829
46 H 0.221 0.779
47 H 0.089 0.911
48 H 0.116 0.884
49 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.970 -0.930 -1.298 3.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.369 6.369
2 C -0.198 4.198
3 Si 0.676 3.324
4 C -0.048 4.048
5 C -0.176 4.176
6 C -0.092 4.092
7 C -0.230 4.230
8 C 0.071 3.929
9 O -0.238 6.238
10 C -0.002 4.002
11 C -0.173 4.173
12 C 0.310 3.690
13 O -0.460 6.460
14 N -0.352 5.352
15 C 0.003 3.997
16 H 0.105 0.895
17 C -0.186 4.186
18 C -0.135 4.135
19 H 0.111 0.889
20 C -0.011 4.011
21 N -0.133 5.133
22 C -0.181 4.181
23 C -0.214 4.214
24 N -0.266 5.266
25 C -0.109 4.109
26 C -0.157 4.157
27 C -0.161 4.161
28 H 0.246 0.754
29 H 0.115 0.885
30 H -0.226 1.226
31 H -0.211 1.211
32 H 0.164 0.836
33 H 0.173 0.827
34 H 0.157 0.843
35 H 0.083 0.917
36 H 0.085 0.915
37 H 0.142 0.858
38 H 0.144 0.856
39 H 0.254 0.746
40 H 0.122 0.878
41 H 0.072 0.928
42 H 0.132 0.868
43 H 0.130 0.870
44 H 0.218 0.782
45 H 0.188 0.812
46 H 0.237 0.763
47 H 0.108 0.892
48 H 0.134 0.866
49 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -2.022 -0.218 -2.082 2.911
hybrid contribution -1.916 -0.278 0.483 1.995
sum -3.938 -0.496 -1.599 4.279
Atomic orbital electron populations
1.86549 1.18438 1.80813 1.51076 1.25115 0.84185 1.12284 0.98227
0.93997 0.90355 0.71534 0.76492 1.19311 0.96784 0.92939 0.95764
1.21135 1.00792 1.00637 0.95077 1.21238 0.97657 0.93467 0.96880
1.21553 1.03253 0.97090 1.01122 1.19120 0.95328 0.83537 0.94916
1.85945 1.71402 1.22769 1.43718 1.22444 0.99008 0.93159 0.85551
1.21437 1.04930 0.94018 0.96926 1.20581 0.79367 0.82083 0.86931
1.90739 1.39976 1.63836 1.51485 1.45552 1.53100 1.11455 1.25070
1.21896 0.95982 0.94503 0.87311 0.89482 1.23548 0.96797 0.95545
1.02700 1.22920 0.97630 0.92480 1.00473 0.88850 1.22235 0.98639
0.90039 0.90227 1.45748 1.07298 1.31482 1.28765 1.23151 1.01173
0.97531 0.96248 1.22634 0.88557 1.05385 1.04828 1.70248 1.30749
1.12677 1.12974 1.25375 0.84710 1.01399 0.99394 1.23278 0.99164
0.91862 1.01390 1.20316 1.03486 0.94749 0.97520 0.75367 0.88534
1.22602 1.21060 0.83610 0.82687 0.84340 0.91695 0.91547 0.85775
0.85572 0.74607 0.87794 0.92752 0.86849 0.86955 0.78163 0.81159
0.76267 0.89224 0.86551 0.85393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 -2.11 12.74 -148.98 -1.90 -4.00 16
2 C -0.09 -0.09 2.81 71.23 0.20 0.11 16
3 Si 0.77 -1.06 29.79 68.60 2.04 0.98 16
4 C -0.05 -0.23 5.42 -19.88 -0.11 -0.34 16
5 C -0.16 -0.41 8.67 22.28 0.19 -0.21 16
6 C -0.07 -0.16 10.04 22.25 0.22 0.06 16
7 C -0.21 -0.98 9.04 22.37 0.20 -0.78 16
8 C 0.12 0.82 6.69 22.51 0.15 0.97 16
9 O -0.32 -1.86 10.14 -92.38 -0.94 -2.80 16
10 C 0.07 0.15 4.03 71.98 0.29 0.44 16
11 C -0.13 0.48 6.07 29.85 0.18 0.67 16
12 C 0.52 0.10 7.83 87.65 0.69 0.78 16
13 O -0.58 -5.30 15.58 -3.04 -0.05 -5.35 16
14 N -0.70 3.91 5.26 -440.04 -2.32 1.60 16
15 C 0.11 -0.62 4.32 45.52 0.20 -0.42 16
16 H 0.09 -0.08 7.47 -2.39 -0.02 -0.10 16
17 C -0.15 0.98 7.43 31.12 0.23 1.21 16
18 C -0.12 1.22 3.84 -10.27 -0.04 1.18 16
19 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16
20 C 0.11 -1.16 5.99 86.38 0.52 -0.65 16
21 N -0.45 1.31 2.75 -529.07 -1.46 -0.14 16
22 C -0.05 0.05 11.58 83.09 0.96 1.01 16
23 C -0.07 -0.37 11.87 83.52 0.99 0.62 16
24 N -0.55 -5.29 11.25 -200.31 -2.25 -7.54 16
25 C 0.17 0.39 12.56 180.26 2.26 2.66 16
26 C -0.12 1.41 7.39 31.12 0.23 1.64 16
27 C -0.14 -1.02 9.55 22.37 0.21 -0.81 16
28 H 0.40 -1.88 8.74 -74.05 -0.65 -2.53 16
29 H 0.10 -0.28 7.96 -2.39 -0.02 -0.30 16
30 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16
31 H -0.28 -0.64 7.11 99.48 0.71 0.07 16
32 H 0.15 -0.28 4.87 -2.91 -0.01 -0.30 16
33 H 0.16 -0.51 8.06 -2.91 -0.02 -0.53 16
34 H 0.14 0.36 6.30 -2.91 -0.02 0.34 16
35 H 0.06 0.22 7.61 -2.39 -0.02 0.20 16
36 H 0.07 0.21 7.63 -2.39 -0.02 0.19 16
37 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16
38 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16
39 H 0.42 -4.61 8.70 -92.71 -0.81 -5.41 16
40 H 0.10 -0.87 7.90 -2.39 -0.02 -0.89 16
41 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16
42 H 0.11 -1.54 8.14 -2.38 -0.02 -1.56 16
43 H 0.11 -1.47 7.85 -2.39 -0.02 -1.49 16
44 H 0.20 -1.56 8.06 -2.91 -0.02 -1.58 16
45 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16
46 H 0.22 -0.81 8.06 -2.91 -0.02 -0.83 16
47 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16
48 H 0.12 -1.65 8.10 -2.39 -0.02 -1.67 16
49 H 0.13 0.89 8.06 -2.91 -0.02 0.86 16
Total: 0.00 -29.50 409.13 0.29 -29.22
By element:
Atomic # 1 Polarization: -19.67 SS G_CDS: -0.44 Total: -20.10 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: 7.59 Total: 8.14 kcal
Atomic # 7 Polarization: -0.06 SS G_CDS: -6.02 Total: -6.09 kcal
Atomic # 8 Polarization: -9.27 SS G_CDS: -2.88 Total: -12.15 kcal
Atomic # 14 Polarization: -1.06 SS G_CDS: 2.04 Total: 0.98 kcal
Total: -29.50 0.29 -29.22 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14688108_4549614.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.689 kcal
(2) G-P(sol) polarization free energy of solvation -29.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.185 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.38 seconds