Wall clock time and date at job start Sun Mar 7 2021 00:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35977 * 117.00089 * 2 1
4 4 C 1.38682 * 119.99945 * 180.02562 * 3 2 1
5 5 C 1.38155 * 119.99377 * 179.74365 * 4 3 2
6 6 C 1.50704 * 119.99550 * 180.25320 * 5 4 3
7 7 O 1.42903 * 109.47115 * 255.26011 * 6 5 4
8 8 Si 1.86298 * 109.47114 * 15.25743 * 6 5 4
9 9 C 1.38673 * 120.00333 * 0.51305 * 5 4 3
10 10 O 1.35987 * 120.00081 * 179.74356 * 9 5 4
11 11 C 1.42899 * 117.00157 * 179.72467 * 10 9 5
12 12 C 1.50700 * 109.47143 * 179.97438 * 11 10 9
13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10
14 14 N 1.34777 * 119.99675 * 180.27800 * 12 11 10
15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11
16 16 H 1.09007 * 112.85337 * 23.80486 * 15 14 12
17 17 C 1.53787 * 113.61173 * 154.99569 * 15 14 12
18 18 C 1.53781 * 87.07999 * 89.11873 * 17 15 14
19 19 H 1.09007 * 113.61195 * 270.88565 * 18 17 15
20 20 C 1.52996 * 113.61836 * 139.98217 * 18 17 15
21 21 N 1.46503 * 109.47156 * 174.99736 * 20 18 17
22 22 C 1.36880 * 126.39749 * 269.70995 * 21 20 18
23 23 C 1.34670 * 106.81781 * 179.84484 * 22 21 20
24 24 N 1.34131 * 108.01668 * 0.42506 * 23 22 21
25 25 C 1.30494 * 109.25926 * 359.72769 * 24 23 22
26 26 C 1.53777 * 113.61648 * 252.49385 * 15 14 12
27 27 C 1.38714 * 119.99837 * 359.46311 * 9 5 4
28 28 C 1.38110 * 120.00103 * 0.28323 * 27 9 5
29 29 H 1.08995 * 109.46963 * 299.99585 * 1 2 3
30 30 H 1.08998 * 109.47485 * 59.99744 * 1 2 3
31 31 H 1.09003 * 109.47301 * 180.02562 * 1 2 3
32 32 H 1.07997 * 119.99856 * 359.97438 * 4 3 2
33 33 H 1.09001 * 109.46963 * 135.26265 * 6 5 4
34 34 H 0.96701 * 114.00461 * 59.99422 * 7 6 5
35 35 H 1.48500 * 109.99682 * 180.02562 * 8 6 5
36 36 H 1.48502 * 110.00018 * 301.31918 * 8 6 5
37 37 H 1.09009 * 109.46798 * 59.99572 * 11 10 9
38 38 H 1.08998 * 109.46844 * 300.00077 * 11 10 9
39 39 H 0.97000 * 119.99894 * 359.71837 * 14 12 11
40 40 H 1.08999 * 113.61440 * 203.66066 * 17 15 14
41 41 H 1.08995 * 113.61444 * 334.48240 * 17 15 14
42 42 H 1.09003 * 109.46966 * 294.99512 * 20 18 17
43 43 H 1.09002 * 109.47247 * 54.99902 * 20 18 17
44 44 H 1.08000 * 126.59150 * 359.97438 * 22 21 20
45 45 H 1.07996 * 125.99461 * 180.12310 * 23 22 21
46 46 H 1.07997 * 125.65071 * 180.02562 * 25 24 23
47 47 H 1.08999 * 113.61256 * 25.43033 * 26 15 14
48 48 H 1.08996 * 113.61858 * 156.33582 * 26 15 14
49 49 H 1.08002 * 120.00040 * 180.25465 * 27 9 5
50 50 H 1.07999 * 119.99628 * 180.02562 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2116 0.0000
4 6 3.4312 1.2841 -0.0005
5 6 4.0584 2.5151 -0.0059
6 6 5.5633 2.5940 -0.0122
7 8 6.0264 2.9642 1.2880
8 14 6.2702 0.9332 -0.4736
9 6 3.3031 3.6781 0.0000
10 8 3.9204 4.8898 0.0000
11 6 3.0805 6.0459 0.0002
12 6 3.9347 7.2874 0.0008
13 8 5.1438 7.1916 0.0015
14 7 3.3551 8.5041 0.0067
15 6 4.1855 9.7110 0.0134
16 1 5.1828 9.5409 -0.3924
17 6 3.4830 10.9454 -0.5763
18 6 2.9639 11.2303 0.8429
19 1 2.0120 10.7477 1.0648
20 6 2.9801 12.7143 1.2151
21 7 2.3603 12.8947 2.5302
22 6 1.0351 13.1317 2.7779
23 6 0.8997 13.2285 4.1142
24 7 2.1109 13.0646 4.6669
25 6 2.9906 12.8642 3.7241
26 6 4.1848 10.4518 1.3609
27 6 1.9179 3.6055 0.0001
28 6 1.2909 2.3749 0.0001
29 1 -0.3633 0.5137 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 0.0005
32 1 4.0194 0.3783 -0.0005
33 1 5.8850 3.3404 -0.7386
34 1 5.7761 2.3437 1.9862
35 1 7.7538 0.9976 -0.4828
36 1 5.8131 -0.0991 0.4911
37 1 2.4513 6.0377 0.8903
38 1 2.4512 6.0378 -0.8897
39 1 2.3881 8.5807 0.0064
40 1 4.1719 11.7031 -0.9495
41 1 2.6960 10.7007 -1.2896
42 1 4.0102 13.0695 1.2471
43 1 2.4229 13.2819 0.4698
44 1 0.2488 13.2215 2.0429
45 1 -0.0216 13.4113 4.6473
46 1 4.0476 12.7007 3.8739
47 1 3.9632 9.8087 2.2126
48 1 5.0655 11.0746 1.5173
49 1 1.3296 4.5113 0.0005
50 1 0.2123 2.3185 -0.0003
There are 69 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 69
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_14688108_4974302.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 00:05:17
Heat of formation + Delta-G solvation = -6.487621 kcal
Electronic energy + Delta-G solvation = -33191.029183 eV
Core-core repulsion = 28574.585562 eV
Total energy + Delta-G solvation = -4616.443620 eV
No. of doubly occupied orbitals = 69
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 374.172 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-42.94740 -41.84140 -41.26828 -40.14630 -39.34829 -38.26318 -36.98417 -35.41973
-33.98521 -32.84217 -31.10151 -30.39842 -29.70817 -28.46652 -27.91896 -26.73224
-26.65681 -24.45557 -23.57859 -22.45988 -22.25633 -21.94560 -21.78924 -20.36588
-19.68123 -18.79328 -18.64719 -18.25331 -17.77491 -17.54853 -17.28378 -17.00038
-16.64628 -16.46857 -16.09700 -16.07436 -15.89524 -15.49937 -15.42775 -15.24741
-15.09920 -14.89377 -14.75511 -14.56177 -14.34922 -14.22347 -14.02812 -13.70517
-13.50049 -13.46397 -13.43023 -13.02884 -12.81912 -12.51832 -12.45149 -12.35378
-11.89771 -11.76613 -11.74174 -11.44047 -11.36498 -11.05983 -10.89943 -10.58211
-10.48565 -10.18166 -10.14287 -9.43717 -8.81107 -4.97174 0.04790 0.34994
1.16441 1.25423 1.38284 1.45709 1.54463 1.89945 1.93489 2.23684
2.33717 2.53372 2.58225 3.37218 3.39956 3.46233 3.47671 3.64914
3.70846 3.73741 3.77601 3.89025 3.92219 4.04621 4.08623 4.09343
4.12147 4.12922 4.23866 4.26118 4.41909 4.42819 4.46931 4.51131
4.61802 4.66747 4.68869 4.75201 4.77839 4.79278 4.81714 4.96686
4.97963 5.00180 5.12958 5.13808 5.20965 5.36231 5.41754 5.51845
5.84471 6.16643 6.31944 6.37978 6.45523 6.49781 7.08427 7.17426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.335 6.335
3 C 0.088 3.912
4 C -0.125 4.125
5 C -0.117 4.117
6 C -0.077 4.077
7 O -0.545 6.545
8 Si 0.775 3.225
9 C 0.101 3.899
10 O -0.309 6.309
11 C 0.036 3.964
12 C 0.514 3.486
13 O -0.568 6.568
14 N -0.694 5.694
15 C 0.109 3.891
16 H 0.083 0.917
17 C -0.115 4.115
18 C -0.114 4.114
19 H 0.097 0.903
20 C 0.109 3.891
21 N -0.451 5.451
22 C -0.045 4.045
23 C -0.068 4.068
24 N -0.547 5.547
25 C 0.172 3.828
26 C -0.150 4.150
27 C -0.164 4.164
28 C -0.158 4.158
29 H 0.064 0.936
30 H 0.069 0.931
31 H 0.113 0.887
32 H 0.146 0.854
33 H 0.107 0.893
34 H 0.382 0.618
35 H -0.300 1.300
36 H -0.273 1.273
37 H 0.117 0.883
38 H 0.128 0.872
39 H 0.419 0.581
40 H 0.116 0.884
41 H 0.094 0.906
42 H 0.110 0.890
43 H 0.116 0.884
44 H 0.204 0.796
45 H 0.172 0.828
46 H 0.219 0.781
47 H 0.052 0.948
48 H 0.102 0.898
49 H 0.165 0.835
50 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.397 1.407 -7.638 12.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.250 6.250
3 C 0.043 3.957
4 C -0.144 4.144
5 C -0.119 4.119
6 C -0.185 4.185
7 O -0.352 6.352
8 Si 0.679 3.321
9 C 0.055 3.945
10 O -0.223 6.223
11 C -0.042 4.042
12 C 0.300 3.700
13 O -0.446 6.446
14 N -0.348 5.348
15 C 0.004 3.996
16 H 0.101 0.899
17 C -0.153 4.153
18 C -0.133 4.133
19 H 0.115 0.885
20 C -0.012 4.012
21 N -0.133 5.133
22 C -0.179 4.179
23 C -0.215 4.215
24 N -0.267 5.267
25 C -0.110 4.110
26 C -0.189 4.189
27 C -0.182 4.182
28 C -0.176 4.176
29 H 0.083 0.917
30 H 0.088 0.912
31 H 0.131 0.869
32 H 0.163 0.837
33 H 0.125 0.875
34 H 0.231 0.769
35 H -0.229 1.229
36 H -0.199 1.199
37 H 0.135 0.865
38 H 0.145 0.855
39 H 0.257 0.743
40 H 0.134 0.866
41 H 0.113 0.887
42 H 0.128 0.872
43 H 0.134 0.866
44 H 0.220 0.780
45 H 0.189 0.811
46 H 0.235 0.765
47 H 0.071 0.929
48 H 0.120 0.880
49 H 0.182 0.818
50 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -7.288 1.042 -7.036 10.184
hybrid contribution -0.883 0.331 0.847 1.267
sum -8.171 1.373 -6.189 10.342
Atomic orbital electron populations
1.23345 0.76395 1.05546 1.02395 1.86079 1.23398 1.26483 1.89024
1.18953 0.91989 0.85216 0.99533 1.20284 0.92573 0.97076 1.04435
1.19368 0.96088 0.90543 1.05855 1.25132 0.91948 1.13588 0.87805
1.86657 1.78564 1.52655 1.17333 0.94013 0.76578 0.72397 0.89063
1.18833 0.91502 0.84512 0.99611 1.86208 1.35120 1.11872 1.89069
1.22701 0.92667 0.82310 1.06528 1.20550 0.88339 0.85517 0.75555
1.90783 1.16790 1.87287 1.49720 1.45350 1.11012 1.03784 1.74666
1.21893 0.95662 0.84175 0.97884 0.89913 1.23270 1.00930 0.95717
0.95431 1.22923 0.98862 0.94208 0.97267 0.88473 1.22240 1.00869
0.97063 0.81002 1.45756 1.07614 1.51425 1.08491 1.23167 0.86980
1.09147 0.98578 1.22648 0.96608 1.09435 0.92834 1.70240 1.01761
1.20660 1.33993 1.25341 1.00536 1.05146 0.80019 1.23567 0.99294
0.99091 0.96904 1.21372 0.92121 0.99974 1.04740 1.21398 1.01532
0.90888 1.03797 0.91703 0.91212 0.86853 0.83686 0.87529 0.76945
1.22856 1.19947 0.86515 0.85476 0.74310 0.86578 0.88716 0.87161
0.86593 0.77957 0.81112 0.76499 0.92898 0.87980 0.81808 0.82232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16
2 O -0.34 -0.69 10.50 -93.30 -0.98 -1.67 16
3 C 0.09 0.20 6.69 22.49 0.15 0.35 16
4 C -0.13 -0.44 8.59 22.36 0.19 -0.25 16
5 C -0.12 -0.60 5.27 -19.78 -0.10 -0.71 16
6 C -0.08 -0.52 2.37 71.24 0.17 -0.35 16
7 O -0.54 -5.73 12.88 -148.98 -1.92 -7.65 16
8 Si 0.78 2.20 30.26 68.60 2.08 4.27 16
9 C 0.10 0.42 6.66 22.49 0.15 0.57 16
10 O -0.31 -2.16 9.00 -74.36 -0.67 -2.83 16
11 C 0.04 -0.09 5.22 71.24 0.37 0.28 16
12 C 0.51 1.50 7.91 87.66 0.69 2.19 16
13 O -0.57 -8.64 16.10 16.00 0.26 -8.38 16
14 N -0.69 3.64 5.26 -440.03 -2.32 1.32 16
15 C 0.11 -0.52 4.32 45.52 0.20 -0.32 16
16 H 0.08 0.09 7.47 -2.38 -0.02 0.07 16
17 C -0.12 1.40 7.39 31.12 0.23 1.63 16
18 C -0.11 1.23 3.84 -10.27 -0.04 1.19 16
19 H 0.10 -0.98 8.14 -2.38 -0.02 -1.00 16
20 C 0.11 -1.17 5.99 86.38 0.52 -0.66 16
21 N -0.45 1.36 2.75 -529.07 -1.46 -0.10 16
22 C -0.04 0.07 11.58 83.09 0.96 1.03 16
23 C -0.07 -0.36 11.87 83.52 0.99 0.64 16
24 N -0.55 -5.36 11.25 -200.32 -2.25 -7.61 16
25 C 0.17 0.45 12.56 180.26 2.26 2.71 16
26 C -0.15 0.85 7.43 31.12 0.23 1.09 16
27 C -0.16 0.34 9.03 22.35 0.20 0.54 16
28 C -0.16 0.32 9.03 22.35 0.20 0.52 16
29 H 0.06 -0.51 7.66 -2.39 -0.02 -0.52 16
30 H 0.07 -0.59 7.66 -2.39 -0.02 -0.61 16
31 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16
32 H 0.15 0.31 4.86 -2.91 -0.01 0.30 16
33 H 0.11 0.95 7.82 -2.39 -0.02 0.93 16
34 H 0.38 1.36 8.70 -74.06 -0.64 0.71 16
35 H -0.30 -3.04 7.11 99.48 0.71 -2.33 16
36 H -0.27 -1.37 6.68 99.48 0.66 -0.70 16
37 H 0.12 -0.93 7.66 -2.38 -0.02 -0.95 16
38 H 0.13 -1.26 7.66 -2.39 -0.02 -1.28 16
39 H 0.42 -5.25 8.70 -92.71 -0.81 -6.05 16
40 H 0.12 -1.64 8.10 -2.39 -0.02 -1.66 16
41 H 0.09 -1.33 8.14 -2.39 -0.02 -1.35 16
42 H 0.11 -1.40 7.84 -2.39 -0.02 -1.42 16
43 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16
44 H 0.20 -1.76 8.06 -2.91 -0.02 -1.78 16
45 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16
46 H 0.22 -0.62 8.06 -2.91 -0.02 -0.64 16
47 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16
48 H 0.10 -0.71 7.90 -2.39 -0.02 -0.73 16
49 H 0.16 -1.53 6.29 -2.91 -0.02 -1.55 16
50 H 0.16 -1.23 6.29 -2.91 -0.02 -1.25 16
Total: 0.00 -36.11 416.84 0.77 -35.34
By element:
Atomic # 1 Polarization: -23.68 SS G_CDS: -0.46 Total: -24.14 kcal
Atomic # 6 Polarization: 2.95 SS G_CDS: 8.49 Total: 11.45 kcal
Atomic # 7 Polarization: -0.36 SS G_CDS: -6.02 Total: -6.39 kcal
Atomic # 8 Polarization: -17.22 SS G_CDS: -3.31 Total: -20.53 kcal
Atomic # 14 Polarization: 2.20 SS G_CDS: 2.08 Total: 4.27 kcal
Total: -36.11 0.77 -35.34 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_14688108_4974302.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.851 kcal
(2) G-P(sol) polarization free energy of solvation -36.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds